Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38355 * 119.45743 * 2 1 4 4 C 1.38357 * 119.30148 * 179.69652 * 3 2 1 5 5 C 1.40021 * 118.28705 * 0.54239 * 4 3 2 6 6 C 1.47841 * 120.55962 * 179.72920 * 5 4 3 7 7 O 1.21560 * 119.99917 * 173.75420 * 6 5 4 8 8 N 1.34773 * 120.00164 * 353.75867 * 6 5 4 9 9 C 1.46501 * 120.00457 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47536 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47149 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46974 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99747 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99781 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99627 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47060 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47015 * 119.99698 * 16 14 12 19 19 H 1.48498 * 109.46889 * 239.99599 * 16 14 12 20 20 C 1.39519 * 118.88390 * 359.46165 * 5 4 3 21 21 C 1.50702 * 119.71991 * 180.25263 * 20 5 4 22 22 N 1.31696 * 120.56311 * 0.27330 * 20 5 4 23 23 H 1.08994 * 109.47298 * 270.02008 * 1 2 3 24 24 H 1.08998 * 109.47154 * 30.02371 * 1 2 3 25 25 H 1.09003 * 109.47074 * 150.01988 * 1 2 3 26 26 H 1.08002 * 120.35155 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.86121 * 180.27983 * 4 3 2 28 28 H 0.97004 * 120.00249 * 359.97438 * 8 6 5 29 29 H 1.09000 * 109.47343 * 300.00803 * 9 8 6 30 30 H 1.09009 * 109.46786 * 60.00155 * 9 8 6 31 31 H 1.08995 * 109.47038 * 300.00543 * 10 9 8 32 32 H 1.08997 * 109.46637 * 60.00100 * 10 9 8 33 33 H 1.09004 * 109.47220 * 299.99734 * 11 10 9 34 34 H 1.08997 * 109.47577 * 60.00299 * 11 10 9 35 35 H 0.97002 * 119.99452 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.47000 * 83.42413 * 21 20 5 37 37 H 1.09000 * 109.46917 * 203.42266 * 21 20 5 38 38 H 1.09003 * 109.46789 * 323.42439 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0064 5 6 4.2312 -0.0338 0.0010 6 6 5.7082 -0.0964 0.0014 7 8 6.2711 -1.1683 0.1112 8 7 6.4307 1.0348 -0.1199 9 6 7.8944 0.9729 -0.1190 10 6 8.4648 2.3846 -0.2697 11 6 9.9933 2.3197 -0.2694 12 6 10.5551 3.7103 -0.4173 13 1 9.8885 4.5556 -0.5034 14 6 11.9201 3.9032 -0.4437 15 7 12.7318 2.8737 -0.3394 16 14 12.6164 5.6268 -0.6277 17 1 11.5017 6.6030 -0.7257 18 1 13.4559 5.9503 0.5537 19 1 13.4450 5.6971 -1.8580 20 6 3.4716 -1.2042 0.0009 21 6 4.1628 -2.5434 0.0009 22 7 2.1558 -1.1486 0.0004 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6443 2.1382 -0.0004 27 1 4.1274 2.1265 0.0111 28 1 5.9816 1.8901 -0.2079 29 1 8.2392 0.5396 0.8199 30 1 8.2324 0.3541 -0.9504 31 1 8.1200 2.8173 -1.2088 32 1 8.1268 3.0036 0.5613 33 1 10.3384 1.8869 0.6696 34 1 10.3310 1.7008 -1.1006 35 1 13.6921 3.0095 -0.3576 36 1 4.4339 -2.8123 1.0218 37 1 3.4914 -3.2987 -0.4077 38 1 5.0628 -2.4877 -0.6115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = -24.387171 kcal Electronic energy + Delta-G solvation = -18560.328236 eV Core-core repulsion = 15594.908669 eV Total energy + Delta-G solvation = -2965.419568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93284 -39.05160 -35.62296 -33.73451 -33.70191 -32.88595 -31.13548 -29.23994 -27.86693 -26.33546 -23.50251 -23.00562 -22.08670 -20.82114 -20.21812 -17.72048 -16.97591 -16.29889 -15.65501 -15.60377 -15.33832 -14.85489 -14.57158 -14.38756 -13.93068 -13.52235 -13.44261 -13.16966 -12.57022 -12.43793 -12.31350 -12.13342 -12.01508 -11.86039 -11.73668 -10.94875 -10.77918 -10.59577 -10.10621 -10.02751 -9.91248 -9.69484 -9.34206 -9.14100 -9.13016 -8.76883 -8.40417 -6.04810 -4.08001 0.46044 0.95427 2.82040 3.23519 3.27894 3.35617 3.38976 3.61520 3.92802 4.35115 4.41689 4.47282 4.57249 4.77366 5.07187 5.18219 5.22869 5.31180 5.32847 5.53492 5.61106 5.69091 5.71841 5.72169 5.73788 5.95701 6.09694 6.11863 6.38138 6.50232 6.54411 6.76814 6.95230 7.57153 7.60303 7.72271 7.72341 7.93786 8.26109 8.35112 8.98848 9.56444 11.06520 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039203 B = 0.003116 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.065668 B = 8983.099602 C = 9656.961735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.151 3.849 3 C -0.189 4.189 4 C -0.036 4.036 5 C -0.195 4.195 6 C 0.556 3.444 7 O -0.531 6.531 8 N -0.720 5.720 9 C 0.116 3.884 10 C -0.121 4.121 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.194 3.806 21 C -0.110 4.110 22 N -0.493 5.493 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 -4.129 0.555 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.013 3.987 3 C -0.209 4.209 4 C -0.062 4.062 5 C -0.200 4.200 6 C 0.343 3.657 7 O -0.410 6.410 8 N -0.370 5.370 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.055 3.945 21 C -0.167 4.167 22 N -0.203 5.203 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.139 -5.709 0.635 23.841 hybrid contribution 0.765 2.345 -0.095 2.469 sum -22.373 -3.363 0.539 22.631 Atomic orbital electron populations 1.20778 0.88520 1.03741 1.03356 1.21528 0.97245 0.88320 0.91611 1.21874 0.94497 0.99504 1.05046 1.21796 0.94721 0.97379 0.92298 1.20861 0.94848 0.94866 1.09410 1.17994 0.86055 0.84501 0.77169 1.90731 1.72310 1.28171 1.49756 1.46139 1.08575 1.08757 1.73557 1.21705 0.76590 1.00055 1.02242 1.21898 1.00606 0.92634 1.00797 1.19033 0.87211 0.97448 0.97715 1.21233 0.91550 0.93024 1.50275 0.92602 1.25035 0.97280 0.96898 0.95273 1.69975 1.03189 1.29712 1.50357 0.86525 0.79074 0.84618 0.77710 1.19762 1.20977 1.20981 1.21533 0.88444 0.95553 0.88922 1.21067 1.00648 0.90598 1.04355 1.67497 1.09089 1.29061 1.14672 0.90040 0.90414 0.90217 0.84197 0.84218 0.76920 0.91466 0.91472 0.92700 0.92707 0.96222 0.96214 0.92946 0.89844 0.91380 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.00 0.37 -0.31 16 2 C 0.15 1.49 6.78 -82.51 -0.56 0.93 16 3 C -0.19 -1.65 9.72 -39.49 -0.38 -2.03 16 4 C -0.04 -0.35 9.63 -38.87 -0.37 -0.73 16 5 C -0.19 -2.49 5.89 -104.82 -0.62 -3.11 16 6 C 0.56 8.35 7.71 -12.33 -0.10 8.26 16 7 O -0.53 -9.43 13.37 5.31 0.07 -9.36 16 8 N -0.72 -10.17 5.51 -61.25 -0.34 -10.51 16 9 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 10 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C 0.19 2.55 6.82 -82.17 -0.56 1.99 16 21 C -0.11 -1.37 8.88 36.01 0.32 -1.05 16 22 N -0.49 -6.10 10.17 -5.42 -0.06 -6.16 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 27 H 0.14 1.04 6.57 -52.49 -0.34 0.69 16 28 H 0.40 4.47 6.62 -40.82 -0.27 4.20 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.45 5.85 -51.93 -0.30 1.15 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -32.41 321.91 -7.90 -40.31 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.53 Total: -0.21 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.62 Total: -9.31 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.34 Total: -42.57 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.41 -7.90 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.927 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds