Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34512 * 125.78785 * 2 1 4 4 C 1.41386 * 106.84294 * 180.02562 * 3 2 1 5 5 C 1.34524 * 106.83583 * 0.02562 * 4 3 2 6 6 C 1.50692 * 125.78774 * 180.02562 * 5 4 3 7 7 N 1.46907 * 109.47436 * 89.99753 * 6 5 4 8 8 C 1.46905 * 110.99542 * 66.04455 * 7 6 5 9 9 C 1.46900 * 110.99973 * 189.99640 * 7 6 5 10 10 C 1.53002 * 109.46619 * 169.99996 * 9 7 6 11 11 H 1.09002 * 109.47070 * 55.00278 * 10 9 7 12 12 C 1.47194 * 109.47253 * 295.00217 * 10 9 7 13 13 N 7.01824 * 147.54992 * 94.73061 * 2 1 3 14 14 C 1.52997 * 109.46817 * 175.00098 * 10 9 7 15 15 C 1.50705 * 109.47390 * 184.99865 * 14 10 9 16 16 H 1.08000 * 119.99498 * 0.02562 * 15 14 10 17 17 C 1.37870 * 120.00441 * 180.02562 * 15 14 10 18 18 N 1.31518 * 120.00253 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46539 * 90.00506 * 19 17 15 21 21 H 1.48496 * 109.46783 * 210.00191 * 19 17 15 22 22 H 1.48494 * 109.47124 * 330.00366 * 19 17 15 23 23 O 1.34303 * 108.42147 * 0.26236 * 5 4 3 24 24 H 1.09006 * 109.46856 * 89.99590 * 1 2 3 25 25 H 1.08997 * 109.47483 * 209.99672 * 1 2 3 26 26 H 1.09006 * 109.46873 * 330.00282 * 1 2 3 27 27 H 1.07999 * 126.58684 * 0.05442 * 3 2 1 28 28 H 1.07995 * 126.58547 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47579 * 330.00070 * 6 5 4 30 30 H 1.09000 * 109.47320 * 210.00052 * 6 5 4 31 31 H 1.09001 * 109.46578 * 183.95638 * 8 7 6 32 32 H 1.08994 * 109.47370 * 303.95429 * 8 7 6 33 33 H 1.08997 * 109.47203 * 63.95898 * 8 7 6 34 34 H 1.09000 * 109.47154 * 50.00361 * 9 7 6 35 35 H 1.08996 * 109.47574 * 289.99904 * 9 7 6 36 36 H 1.09001 * 109.47630 * 305.00128 * 14 10 9 37 37 H 1.09004 * 109.47346 * 65.00258 * 14 10 9 38 38 H 0.96996 * 119.99949 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7705 -1.6378 -0.0019 7 7 5.1567 -1.9395 1.3831 8 6 4.1109 -2.7143 2.0642 9 6 6.4462 -2.6416 1.4289 10 6 6.9343 -2.7174 2.8770 11 1 6.1654 -3.1798 3.4959 12 6 7.2123 -1.3596 3.3728 13 7 7.4294 -0.3106 3.7529 14 6 8.2128 -3.5554 2.9410 15 6 8.6257 -3.7329 4.3795 16 1 8.0349 -3.2925 5.1691 17 6 9.7574 -4.4576 4.6876 18 7 10.1174 -4.6129 5.9429 19 14 10.7787 -5.2201 3.3218 20 1 11.8180 -4.2544 2.8830 21 1 11.4315 -6.4561 3.8231 22 1 9.8985 -5.5557 2.1739 23 8 2.2924 -1.0894 -0.0073 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.9666 2.1204 0.0008 28 1 4.5212 1.2433 -0.0004 29 1 5.6041 -1.1584 -0.5152 30 1 4.5107 -2.5630 -0.5164 31 1 4.3905 -2.8637 3.1071 32 1 3.1668 -2.1719 2.0154 33 1 3.9994 -3.6823 1.5757 34 1 7.1763 -2.1002 0.8273 35 1 6.3253 -3.6500 1.0331 36 1 8.0302 -4.5318 2.4923 37 1 9.0079 -3.0476 2.3949 38 1 10.9134 -5.1231 6.1596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072589644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = 16.338697 kcal Electronic energy + Delta-G solvation = -18994.882997 eV Core-core repulsion = 16031.229435 eV Total energy + Delta-G solvation = -2963.653561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.50199 -39.41494 -37.25402 -35.46391 -34.08299 -33.92194 -32.75109 -29.87762 -28.93995 -27.06592 -25.03364 -23.25734 -22.86405 -22.35678 -20.99909 -18.91002 -18.32509 -17.53680 -17.41407 -16.62139 -16.05679 -15.82712 -15.72359 -15.03104 -14.91665 -14.45182 -14.13756 -14.09851 -13.81854 -13.72594 -13.71141 -13.34008 -13.25532 -13.13696 -12.86005 -12.80967 -12.65766 -12.42677 -12.38573 -11.78480 -11.68138 -11.57379 -11.26263 -10.78521 -10.72267 -9.38247 -9.13200 -8.23261 -6.29224 0.74915 1.45157 1.46440 1.57442 1.67543 1.99226 2.06235 2.13385 2.42712 3.03074 3.13642 3.33441 3.72037 3.95806 4.07465 4.16149 4.29674 4.34302 4.38710 4.58176 4.60000 4.68784 4.71260 4.72685 4.79823 4.88981 4.92119 4.94623 5.08803 5.15372 5.26459 5.32507 5.45624 5.64607 5.65699 6.00163 6.01662 6.27532 6.28422 6.78528 6.91752 7.35263 8.93855 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039394 B = 0.003757 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.601792 B = 7451.163990 C = 7601.356474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 C -0.231 4.231 4 C -0.207 4.207 5 C -0.018 4.018 6 C 0.139 3.861 7 N -0.560 5.560 8 C 0.022 3.978 9 C 0.069 3.931 10 C 0.024 3.976 11 H 0.111 0.889 12 C 0.263 3.737 13 N -0.517 5.517 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.026 0.974 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.219 1.219 23 O -0.188 6.188 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.161 0.839 28 H 0.147 0.853 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.863 3.605 -18.817 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.249 4.249 4 C -0.227 4.227 5 C -0.068 4.068 6 C 0.012 3.988 7 N -0.285 5.285 8 C -0.126 4.126 9 C -0.059 4.059 10 C 0.002 3.998 11 H 0.129 0.871 12 C -0.053 4.053 13 N -0.194 5.194 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.044 0.956 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.772 3.228 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.142 1.142 23 O -0.086 6.086 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.481 5.253 -17.899 25.564 hybrid contribution 0.762 -0.934 0.065 1.207 sum -16.719 4.319 -17.834 24.824 Atomic orbital electron populations 1.20459 0.82618 1.05007 1.04639 1.23142 0.95485 0.83793 1.05034 1.21867 0.92622 1.00415 1.10042 1.21789 0.98752 0.94431 1.07740 1.22436 0.82934 0.94852 1.06602 1.20565 0.91522 0.97058 0.89635 1.61917 1.03511 1.47447 1.15598 1.22444 0.94190 0.96321 0.99611 1.22198 0.90258 0.99739 0.93665 1.19114 1.00336 0.83160 0.97144 0.87099 1.29460 0.90344 0.94441 0.91084 1.81023 1.11850 1.15187 1.11383 1.19598 0.92419 0.96780 0.95312 1.21410 1.10033 1.32661 0.92836 0.95560 1.26073 0.98800 0.96594 0.98053 1.70097 1.26502 1.42731 1.20358 0.85680 0.79251 0.77577 0.80285 1.20202 1.21727 1.14163 1.83947 1.16767 1.35902 1.71976 0.88665 0.90131 0.87888 0.82128 0.83528 0.86435 0.91229 0.91473 0.92399 0.93216 0.88757 0.89438 0.91503 0.95263 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.42 71.24 0.74 -0.07 16 2 C -0.02 -0.50 7.32 24.83 0.18 -0.32 16 3 C -0.23 -4.98 10.81 22.19 0.24 -4.74 16 4 C -0.21 -5.03 10.81 22.19 0.24 -4.79 16 5 C -0.02 -0.44 5.89 24.83 0.15 -0.29 16 6 C 0.14 2.77 5.50 85.55 0.47 3.24 16 7 N -0.56 -13.52 4.45 -927.04 -4.13 -17.65 16 8 C 0.02 0.51 9.15 127.69 1.17 1.68 16 9 C 0.07 1.64 4.32 86.30 0.37 2.01 16 10 C 0.02 0.81 2.13 -12.60 -0.03 0.79 16 11 H 0.11 3.65 6.34 -2.39 -0.02 3.63 16 12 C 0.26 10.90 13.67 89.43 1.22 12.12 16 13 N -0.52 -24.09 18.54 20.01 0.37 -23.72 16 14 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 15 C -0.53 -28.68 9.15 25.60 0.23 -28.44 16 16 H 0.03 1.62 7.84 -2.91 -0.02 1.59 16 17 C 0.00 0.07 5.47 84.65 0.46 0.53 16 18 N -0.96 -59.44 13.96 21.45 0.30 -59.14 16 19 Si 0.95 41.03 27.47 68.60 1.88 42.92 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.22 -7.91 6.54 99.48 0.65 -7.26 16 23 O -0.19 -4.50 9.95 -2.50 -0.02 -4.53 16 24 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.12 1.99 7.93 -2.39 -0.02 1.97 16 30 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 31 H 0.07 1.67 6.37 -2.39 -0.02 1.65 16 32 H 0.06 1.42 6.62 -2.39 -0.02 1.40 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 35 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 36 H 0.07 2.32 7.20 -2.39 -0.02 2.30 16 37 H 0.03 1.13 7.57 -2.39 -0.02 1.12 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -73.28 324.28 4.95 -68.33 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.99 Total: 12.05 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 5.56 Total: -18.26 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.46 Total: -100.51 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.02 Total: -4.53 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.88 Total: 42.92 kcal Total: -73.28 4.95 -68.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.671 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds