Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 125.78861 * 2 1 4 4 C 1.41380 * 106.84115 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.84046 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.78978 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47275 * 89.99916 * 6 5 4 8 8 C 1.46896 * 110.99941 * 293.95256 * 7 6 5 9 9 C 1.46904 * 110.99906 * 170.00052 * 7 6 5 10 10 C 1.52996 * 109.46858 * 189.99623 * 9 7 6 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 7 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 7 13 13 N 6.45126 * 114.05375 * 140.43342 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 7 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 O 1.34297 * 108.42129 * 0.25963 * 5 4 3 24 24 H 1.08998 * 109.47016 * 89.99604 * 1 2 3 25 25 H 1.09001 * 109.46846 * 209.99714 * 1 2 3 26 26 H 1.08995 * 109.47187 * 329.99557 * 1 2 3 27 27 H 1.08001 * 126.58262 * 0.06780 * 3 2 1 28 28 H 1.08006 * 126.57990 * 180.02562 * 4 3 2 29 29 H 1.09009 * 109.47060 * 329.99529 * 6 5 4 30 30 H 1.09004 * 109.47186 * 209.99667 * 6 5 4 31 31 H 1.09002 * 109.47590 * 296.04657 * 8 7 6 32 32 H 1.09003 * 109.47109 * 56.04577 * 8 7 6 33 33 H 1.08997 * 109.47828 * 176.04404 * 8 7 6 34 34 H 1.08997 * 109.46933 * 69.99784 * 9 7 6 35 35 H 1.08996 * 109.47325 * 309.99926 * 9 7 6 36 36 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 37 37 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 7 5.1580 -1.9396 1.3816 8 6 5.6525 -0.7364 2.0640 9 6 6.1551 -3.0175 1.4262 10 6 6.3485 -3.4735 2.8738 11 1 6.6082 -2.6153 3.4936 12 6 5.1004 -4.0767 3.3691 13 7 4.1365 -4.5413 3.7525 14 6 7.4746 -4.5073 2.9366 15 6 7.7481 -4.8654 4.3747 16 1 7.1758 -4.4022 5.1648 17 6 8.7249 -5.7890 4.6814 18 7 9.4216 -6.3532 3.7192 19 14 9.0587 -6.2384 6.4635 20 1 8.1460 -5.4696 7.3472 21 1 8.8279 -7.6923 6.6589 22 1 10.4674 -5.9111 6.8011 23 8 2.2925 -1.0894 -0.0073 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9666 2.1204 0.0010 28 1 4.5212 1.2434 -0.0004 29 1 5.6037 -1.1583 -0.5171 30 1 4.5103 -2.5630 -0.5172 31 1 6.5635 -0.3902 1.5757 32 1 4.8949 0.0458 2.0160 33 1 5.8661 -0.9718 3.1066 34 1 7.1028 -2.6523 1.0306 35 1 5.8093 -3.8574 0.8237 36 1 8.3763 -4.0902 2.4882 37 1 7.1773 -5.4021 2.3897 38 1 10.1091 -7.0027 3.9350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072589649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = 33.760018 kcal Electronic energy + Delta-G solvation = -18953.371206 eV Core-core repulsion = 15990.473090 eV Total energy + Delta-G solvation = -2962.898116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.61316 -38.16619 -35.73000 -33.67267 -33.20474 -32.43008 -31.33405 -28.70672 -27.35599 -25.81649 -23.83898 -21.89425 -21.68189 -21.38842 -20.14195 -16.92043 -16.71424 -16.34947 -16.23695 -15.21881 -15.02616 -14.78044 -14.39868 -13.75052 -13.47408 -13.19667 -13.12261 -12.86079 -12.79353 -12.61489 -12.38563 -12.11273 -11.91270 -11.63605 -11.48509 -11.39067 -11.18989 -11.05545 -10.68513 -10.51494 -10.15786 -9.89483 -9.55758 -9.22198 -8.48075 -8.43909 -8.18387 -6.10056 -4.12914 1.64681 2.52398 2.85819 3.28484 3.36843 3.41745 3.75609 3.85887 4.07621 4.41667 4.55187 4.83199 4.91467 4.96773 5.01385 5.24199 5.24995 5.27130 5.28368 5.41824 5.51006 5.51812 5.69602 5.74009 5.77672 5.90025 5.96649 6.07849 6.11182 6.35724 6.47791 6.49127 7.01870 7.07203 7.20517 7.41782 7.52600 7.85630 8.23017 8.61407 8.92084 9.52641 11.00907 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.003666 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.203789 B = 7636.010102 C = 7901.357460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.214 4.214 4 C -0.208 4.208 5 C 0.008 3.992 6 C 0.131 3.869 7 N -0.543 5.543 8 C 0.015 3.985 9 C 0.063 3.937 10 C 0.011 3.989 11 H 0.101 0.899 12 C 0.255 3.745 13 N -0.478 5.478 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.166 6.166 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 15.243 -10.446 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C -0.233 4.233 4 C -0.228 4.228 5 C -0.043 4.043 6 C 0.003 3.997 7 N -0.267 5.267 8 C -0.133 4.133 9 C -0.065 4.065 10 C -0.011 4.011 11 H 0.119 0.881 12 C -0.062 4.062 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.062 6.062 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.763 13.944 -9.651 20.638 hybrid contribution 1.454 0.371 0.480 1.576 sum -10.308 14.315 -9.171 19.882 Atomic orbital electron populations 1.20280 0.85395 1.04025 1.03251 1.22424 0.94009 0.84337 1.06056 1.21503 0.92768 0.99164 1.09910 1.21536 0.98070 0.93831 1.09374 1.22243 0.83016 0.94094 1.04961 1.20477 0.90472 0.97783 0.90934 1.61961 1.42165 1.08649 1.13960 1.22561 0.98565 0.92122 1.00082 1.22287 0.93513 0.93542 0.97189 1.19249 0.88153 0.99956 0.93755 0.88111 1.28863 0.93221 0.92018 0.92114 1.81005 1.13319 1.11041 1.10152 1.19181 0.90779 0.92507 0.98273 1.21181 1.18951 1.24191 0.92006 0.92439 1.24954 0.95869 0.95824 0.97344 1.69949 1.22997 1.28406 1.31687 0.86537 0.78057 0.78413 0.85091 1.19657 1.20962 1.20860 1.83995 1.16402 1.34895 1.70922 0.90318 0.90527 0.89524 0.83784 0.83702 0.91304 0.88979 0.95084 0.91287 0.90482 0.92420 0.90013 0.94415 0.95508 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.20 16 2 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 3 C -0.21 -2.37 10.81 -39.70 -0.43 -2.80 16 4 C -0.21 -2.40 9.30 -39.70 -0.37 -2.77 16 5 C 0.01 0.10 6.23 -35.63 -0.22 -0.12 16 6 C 0.13 1.56 5.50 -4.97 -0.03 1.53 16 7 N -0.54 -7.57 4.45 -244.37 -1.09 -8.65 16 8 C 0.01 0.18 9.09 60.06 0.55 0.73 16 9 C 0.06 0.93 4.32 -3.82 -0.02 0.91 16 10 C 0.01 0.20 2.13 -93.41 -0.20 0.00 16 11 H 0.10 1.76 6.34 -51.93 -0.33 1.43 16 12 C 0.25 5.47 13.67 -20.74 -0.28 5.19 16 13 N -0.48 -11.21 18.54 42.18 0.78 -10.43 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 O -0.17 -2.39 10.65 5.72 0.06 -2.33 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.07 0.67 8.12 -51.92 -0.42 0.25 16 30 H 0.09 1.07 7.93 -51.93 -0.41 0.65 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.83 6.09 -51.93 -0.32 0.51 16 33 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 34 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -31.86 326.83 -6.57 -38.42 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.56 Total: -3.45 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.40 Total: -10.09 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.43 Total: -43.80 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: 0.06 Total: -2.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.86 -6.57 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.182 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds