Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34510 * 125.78861 * 2 1 4 4 C 1.41380 * 106.84115 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.84046 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.78978 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47275 * 89.99916 * 6 5 4 8 8 C 1.46896 * 110.99941 * 293.95256 * 7 6 5 9 9 C 1.46904 * 110.99906 * 170.00052 * 7 6 5 10 10 C 1.52996 * 109.46858 * 189.99623 * 9 7 6 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 7 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 7 13 13 N 6.45126 * 114.05375 * 140.43342 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 7 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 O 1.34297 * 108.42129 * 0.25963 * 5 4 3 24 24 H 1.08998 * 109.47016 * 89.99604 * 1 2 3 25 25 H 1.09001 * 109.46846 * 209.99714 * 1 2 3 26 26 H 1.08995 * 109.47187 * 329.99557 * 1 2 3 27 27 H 1.08001 * 126.58262 * 0.06780 * 3 2 1 28 28 H 1.08006 * 126.57990 * 180.02562 * 4 3 2 29 29 H 1.09009 * 109.47060 * 329.99529 * 6 5 4 30 30 H 1.09004 * 109.47186 * 209.99667 * 6 5 4 31 31 H 1.09002 * 109.47590 * 296.04657 * 8 7 6 32 32 H 1.09003 * 109.47109 * 56.04577 * 8 7 6 33 33 H 1.08997 * 109.47828 * 176.04404 * 8 7 6 34 34 H 1.08997 * 109.46933 * 69.99784 * 9 7 6 35 35 H 1.08996 * 109.47325 * 309.99926 * 9 7 6 36 36 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 37 37 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 7 5.1580 -1.9396 1.3816 8 6 5.6525 -0.7364 2.0640 9 6 6.1551 -3.0175 1.4262 10 6 6.3485 -3.4735 2.8738 11 1 6.6082 -2.6153 3.4936 12 6 5.1004 -4.0767 3.3691 13 7 4.1365 -4.5413 3.7525 14 6 7.4746 -4.5073 2.9366 15 6 7.7481 -4.8654 4.3747 16 1 7.1758 -4.4022 5.1648 17 6 8.7249 -5.7890 4.6814 18 7 9.4216 -6.3532 3.7192 19 14 9.0587 -6.2384 6.4635 20 1 8.1460 -5.4696 7.3472 21 1 8.8279 -7.6923 6.6589 22 1 10.4674 -5.9111 6.8011 23 8 2.2925 -1.0894 -0.0073 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9666 2.1204 0.0010 28 1 4.5212 1.2434 -0.0004 29 1 5.6037 -1.1583 -0.5171 30 1 4.5103 -2.5630 -0.5172 31 1 6.5635 -0.3902 1.5757 32 1 4.8949 0.0458 2.0160 33 1 5.8661 -0.9718 3.1066 34 1 7.1028 -2.6523 1.0306 35 1 5.8093 -3.8574 0.8237 36 1 8.3763 -4.0902 2.4882 37 1 7.1773 -5.4021 2.3897 38 1 10.1091 -7.0027 3.9350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072589649.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = 14.658564 kcal Electronic energy + Delta-G solvation = -18954.199507 eV Core-core repulsion = 15990.473090 eV Total energy + Delta-G solvation = -2963.726418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.49802 -39.40446 -37.27264 -35.51375 -34.09274 -33.82749 -32.56812 -29.69822 -28.73513 -27.06824 -25.09175 -23.58386 -22.66489 -22.49556 -21.01590 -18.54694 -18.28144 -17.47000 -17.33260 -16.67141 -16.11495 -16.02242 -15.73727 -14.94713 -14.63220 -14.43198 -14.20635 -14.02622 -13.75417 -13.73704 -13.69120 -13.46556 -13.16506 -13.03519 -12.88202 -12.73903 -12.55130 -12.49142 -12.40172 -12.22934 -11.77862 -11.38024 -11.12917 -10.75868 -10.54907 -9.38966 -9.10455 -8.19365 -6.27089 0.76015 1.38922 1.42381 1.52611 1.68248 2.03484 2.06944 2.12936 2.41845 3.04395 3.16358 3.35124 3.75221 4.02036 4.08723 4.16839 4.26240 4.33012 4.43374 4.59108 4.66357 4.68557 4.70281 4.80014 4.81098 4.87793 4.95970 4.98169 5.10143 5.16732 5.32279 5.47614 5.62599 5.69382 5.79605 5.99631 6.06276 6.22275 6.32269 6.83347 6.92831 7.41388 8.91664 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.003666 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.203789 B = 7636.010102 C = 7901.357460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.034 4.034 3 C -0.223 4.223 4 C -0.204 4.204 5 C -0.019 4.019 6 C 0.133 3.867 7 N -0.563 5.563 8 C 0.016 3.984 9 C 0.073 3.927 10 C 0.020 3.980 11 H 0.117 0.883 12 C 0.265 3.735 13 N -0.518 5.518 14 C 0.039 3.961 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.272 1.272 23 O -0.197 6.197 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 17.033 -10.694 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.084 4.084 3 C -0.241 4.241 4 C -0.224 4.224 5 C -0.069 4.069 6 C 0.007 3.993 7 N -0.288 5.288 8 C -0.132 4.132 9 C -0.055 4.055 10 C -0.001 4.001 11 H 0.135 0.865 12 C -0.051 4.051 13 N -0.195 5.195 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.197 1.197 23 O -0.095 6.095 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.126 0.874 27 H 0.186 0.814 28 H 0.182 0.818 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.685 15.753 -9.901 21.971 hybrid contribution 1.381 -0.143 0.535 1.488 sum -10.304 15.609 -9.366 20.918 Atomic orbital electron populations 1.20450 0.83173 1.04769 1.04522 1.23201 0.95535 0.84077 1.05591 1.21879 0.92585 1.00174 1.09505 1.21847 0.99062 0.93490 1.07953 1.22514 0.82883 0.94938 1.06575 1.20522 0.91048 0.97951 0.89819 1.61842 1.42113 1.09142 1.15670 1.22560 0.99539 0.91535 0.99540 1.22106 0.95116 0.94140 0.94116 1.19249 0.85263 0.98863 0.96773 0.86495 1.29462 0.93393 0.91184 0.91050 1.80999 1.14734 1.12139 1.11650 1.18996 0.92280 0.92740 0.95993 1.21576 1.18491 1.23905 0.93687 0.92991 1.25688 0.96029 0.96070 1.00880 1.70032 1.23684 1.29132 1.33359 0.85661 0.78346 0.77773 0.80895 1.19518 1.21180 1.19678 1.83975 1.17353 1.36452 1.71700 0.88718 0.91084 0.87421 0.81439 0.81760 0.88704 0.89345 0.92936 0.91134 0.91476 0.90028 0.90280 0.94239 0.97936 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.03 -0.76 7.32 24.83 0.18 -0.58 16 3 C -0.22 -4.50 10.81 22.19 0.24 -4.26 16 4 C -0.20 -4.29 9.30 22.19 0.21 -4.09 16 5 C -0.02 -0.47 6.23 24.83 0.15 -0.32 16 6 C 0.13 2.96 5.50 85.56 0.47 3.43 16 7 N -0.56 -14.77 4.45 -927.04 -4.13 -18.90 16 8 C 0.02 0.35 9.09 127.69 1.16 1.51 16 9 C 0.07 2.05 4.32 86.30 0.37 2.42 16 10 C 0.02 0.73 2.13 -12.60 -0.03 0.71 16 11 H 0.12 3.90 6.34 -2.39 -0.02 3.89 16 12 C 0.27 11.36 13.67 89.44 1.22 12.58 16 13 N -0.52 -24.43 18.54 20.01 0.37 -24.06 16 14 C 0.04 1.77 4.42 29.85 0.13 1.90 16 15 C -0.54 -28.58 8.60 25.60 0.22 -28.36 16 16 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.68 5.46 84.66 0.46 1.14 16 18 N -0.92 -52.68 13.29 21.45 0.28 -52.39 16 19 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 O -0.20 -5.62 10.65 -2.44 -0.03 -5.65 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.10 1.58 8.12 -2.38 -0.02 1.56 16 30 H 0.09 1.98 7.93 -2.38 -0.02 1.96 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.55 6.09 -2.39 -0.01 1.54 16 33 H 0.07 1.62 6.37 -2.39 -0.02 1.60 16 34 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 35 H 0.08 2.25 7.93 -2.39 -0.02 2.23 16 36 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -68.08 326.83 5.11 -62.98 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.04 Total: 6.65 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.54 Total: -14.21 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -3.47 Total: -95.35 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.03 Total: -5.65 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.08 5.11 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589649.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.634 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds