Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37629 * 119.96599 * 2 1 4 4 C 1.39775 * 119.92831 * 179.77208 * 3 2 1 5 5 C 1.47527 * 120.06709 * 180.25327 * 4 3 2 6 6 O 1.21601 * 119.99949 * 0.23122 * 5 4 3 7 7 N 1.34776 * 119.99843 * 180.22536 * 5 4 3 8 8 C 1.46504 * 119.99698 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.46759 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46875 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47078 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99941 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99883 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00283 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47134 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46966 * 120.00275 * 15 13 11 18 18 H 1.48505 * 109.46931 * 240.00060 * 15 13 11 19 19 C 1.39809 * 119.86238 * 0.48516 * 4 3 2 20 20 C 1.37588 * 119.93452 * 359.76789 * 19 4 3 21 21 C 1.39197 * 119.96171 * 180.27907 * 2 1 3 22 22 N 1.39045 * 119.93432 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.72187 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72287 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72268 * 1 2 3 26 26 H 1.08000 * 120.03697 * 0.02562 * 3 2 1 27 27 H 0.96998 * 120.00276 * 0.02562 * 7 5 4 28 28 H 1.09000 * 109.47298 * 300.00399 * 8 7 5 29 29 H 1.09001 * 109.46888 * 60.00198 * 8 7 5 30 30 H 1.09000 * 109.47208 * 300.00046 * 9 8 7 31 31 H 1.09001 * 109.47591 * 60.00221 * 9 8 7 32 32 H 1.09000 * 109.47144 * 299.99968 * 10 9 8 33 33 H 1.09003 * 109.47425 * 60.00265 * 10 9 8 34 34 H 0.97004 * 120.00262 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.03195 * 179.75427 * 19 4 3 36 36 H 1.07995 * 119.96470 * 179.97438 * 20 19 4 37 37 H 0.96994 * 119.99849 * 0.02562 * 22 21 2 38 38 H 0.97003 * 119.99386 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1923 0.0000 4 6 3.5922 1.1914 0.0048 5 6 4.3322 2.4677 0.0105 6 8 3.7261 3.5218 0.0152 7 7 5.6799 2.4652 0.0105 8 6 6.4147 3.7326 0.0167 9 6 7.9184 3.4503 0.0148 10 6 8.6858 4.7739 0.0219 11 6 10.1669 4.4958 0.0206 12 1 10.5251 3.4770 0.0157 13 6 11.0648 5.5422 0.0257 14 7 10.6287 6.7829 0.0322 15 14 12.9008 5.1975 0.0249 16 1 13.1289 3.7302 0.0176 17 1 13.5169 5.7998 -1.1847 18 1 13.5159 5.7887 1.2404 19 6 4.2876 -0.0215 -0.0006 20 6 3.5947 -1.2101 -0.0059 21 6 2.2022 -1.2059 -0.0059 22 7 1.5048 -2.4088 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6545 2.1276 0.0004 27 1 6.1634 1.6243 0.0065 28 1 6.1524 4.3090 -0.8704 29 1 6.1524 4.3003 0.9095 30 1 8.1809 2.8737 0.9017 31 1 8.1804 2.8828 -0.8782 32 1 8.4233 5.3509 -0.8649 33 1 8.4238 5.3411 0.9151 34 1 11.2604 7.5191 0.0355 35 1 5.3676 -0.0254 -0.0009 36 1 4.1313 -2.1473 -0.0105 37 1 0.5349 -2.4070 -0.0112 38 1 1.9884 -3.2497 -0.0149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079866489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = -35.930170 kcal Electronic energy + Delta-G solvation = -18343.816532 eV Core-core repulsion = 15377.896422 eV Total energy + Delta-G solvation = -2965.920110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22119 -38.74455 -35.35725 -34.80765 -33.34696 -32.74533 -31.15470 -29.39045 -27.35324 -26.34923 -23.72895 -22.38299 -22.15457 -20.60428 -19.64645 -17.65276 -17.47229 -16.88356 -16.29833 -15.43704 -15.20012 -14.54805 -14.45606 -14.29809 -14.16474 -13.66644 -13.64355 -13.40572 -12.74539 -12.54400 -12.25994 -12.05129 -11.78315 -11.68839 -11.17553 -10.91786 -10.79788 -10.68620 -10.54874 -9.83334 -9.82928 -9.33655 -9.07362 -9.00179 -8.70106 -8.35265 -7.77100 -5.99669 -4.02589 0.98761 1.23773 3.01533 3.31465 3.38757 3.42181 3.47941 3.52970 3.90362 4.46214 4.55580 4.61688 4.88325 5.08277 5.10552 5.30505 5.33604 5.36144 5.38142 5.72836 5.76529 5.84227 5.89873 6.02669 6.16012 6.22625 6.36071 6.54652 6.59797 6.65311 6.90498 7.05124 7.10060 7.33058 7.66844 7.79722 7.83531 7.99598 8.40402 8.52727 9.04428 9.61518 11.11698 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045410 B = 0.002911 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.453910 B = 9616.648791 C =10202.050516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.179 4.179 3 C -0.011 4.011 4 C -0.188 4.188 5 C 0.556 3.444 6 O -0.550 6.550 7 N -0.724 5.724 8 C 0.117 3.883 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.039 4.039 20 C -0.205 4.205 21 C 0.238 3.762 22 N -0.871 5.871 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.396 0.604 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.399 0.601 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 -19.665 -0.089 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C -0.031 4.031 4 C -0.193 4.193 5 C 0.344 3.656 6 O -0.429 6.429 7 N -0.375 5.375 8 C -0.006 4.006 9 C -0.159 4.159 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.059 4.059 20 C -0.227 4.227 21 C 0.132 3.868 22 N -0.410 5.410 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.231 0.769 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.229 0.771 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.395 -18.678 -0.085 26.926 hybrid contribution 1.230 -0.874 -0.008 1.509 sum -18.165 -19.552 -0.093 26.688 Atomic orbital electron populations 1.20586 0.91028 1.02450 1.02002 1.19287 0.95971 0.91449 1.11646 1.20909 0.92622 0.97527 0.91996 1.19746 0.94167 0.92903 1.12474 1.18191 0.82257 0.88727 0.76395 1.90756 1.68483 1.32874 1.50792 1.46117 1.05994 1.10553 1.74804 1.21642 0.92536 0.84364 1.02037 1.21889 0.91108 1.02062 1.00838 1.19039 0.94172 0.90557 0.97686 1.21248 0.91312 0.92664 1.50695 0.92599 1.25036 0.99022 0.95136 0.95331 1.69979 1.34346 0.98258 1.50723 0.86531 0.85511 0.78327 0.77584 1.19767 1.21016 1.21010 1.21056 0.99542 0.91237 0.94060 1.20469 0.91775 0.98613 1.11879 1.17755 0.91272 0.86172 0.91649 1.42507 1.09295 1.05266 1.83900 0.91554 0.92371 0.91157 0.84751 0.76927 0.91729 0.91725 0.92746 0.92741 0.96241 0.96244 0.92995 0.85550 0.85670 0.77138 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.56 36.01 0.34 -0.38 16 2 C -0.18 -1.75 5.89 -104.49 -0.62 -2.37 16 3 C -0.01 -0.13 9.23 -39.23 -0.36 -0.50 16 4 C -0.19 -2.50 5.88 -104.95 -0.62 -3.12 16 5 C 0.56 9.21 7.76 -12.47 -0.10 9.12 16 6 O -0.55 -11.12 16.34 5.28 0.09 -11.03 16 7 N -0.72 -11.26 5.51 -61.35 -0.34 -11.59 16 8 C 0.12 2.16 5.67 -4.04 -0.02 2.13 16 9 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.04 -0.42 9.53 -39.23 -0.37 -0.79 16 20 C -0.20 -1.86 9.87 -39.44 -0.39 -2.25 16 21 C 0.24 2.09 6.73 -83.86 -0.56 1.53 16 22 N -0.87 -4.66 8.96 32.41 0.29 -4.37 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.13 1.69 7.64 -52.49 -0.40 1.29 16 27 H 0.40 4.99 6.49 -40.82 -0.26 4.72 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.13 1.11 6.39 -52.49 -0.34 0.78 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.40 1.55 6.79 -40.82 -0.28 1.27 16 38 H 0.40 1.40 8.83 -40.82 -0.36 1.04 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -34.01 321.74 -8.11 -42.12 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.32 Total: 1.98 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.39 Total: -12.22 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.69 Total: -42.31 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.01 -8.11 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.190 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds