Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37629 * 119.96599 * 2 1 4 4 C 1.39775 * 119.92831 * 179.77208 * 3 2 1 5 5 C 1.47527 * 120.06709 * 180.25327 * 4 3 2 6 6 O 1.21601 * 119.99949 * 0.23122 * 5 4 3 7 7 N 1.34776 * 119.99843 * 180.22536 * 5 4 3 8 8 C 1.46504 * 119.99698 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.46759 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46875 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47078 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99941 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99883 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00283 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99911 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47134 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46966 * 120.00275 * 15 13 11 18 18 H 1.48505 * 109.46931 * 240.00060 * 15 13 11 19 19 C 1.39809 * 119.86238 * 0.48516 * 4 3 2 20 20 C 1.37588 * 119.93452 * 359.76789 * 19 4 3 21 21 C 1.39197 * 119.96171 * 180.27907 * 2 1 3 22 22 N 1.39045 * 119.93432 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.72187 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72287 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72268 * 1 2 3 26 26 H 1.08000 * 120.03697 * 0.02562 * 3 2 1 27 27 H 0.96998 * 120.00276 * 0.02562 * 7 5 4 28 28 H 1.09000 * 109.47298 * 300.00399 * 8 7 5 29 29 H 1.09001 * 109.46888 * 60.00198 * 8 7 5 30 30 H 1.09000 * 109.47208 * 300.00046 * 9 8 7 31 31 H 1.09001 * 109.47591 * 60.00221 * 9 8 7 32 32 H 1.09000 * 109.47144 * 299.99968 * 10 9 8 33 33 H 1.09003 * 109.47425 * 60.00265 * 10 9 8 34 34 H 0.97004 * 120.00262 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.03195 * 179.75427 * 19 4 3 36 36 H 1.07995 * 119.96470 * 179.97438 * 20 19 4 37 37 H 0.96994 * 119.99849 * 0.02562 * 22 21 2 38 38 H 0.97003 * 119.99386 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1923 0.0000 4 6 3.5922 1.1914 0.0048 5 6 4.3322 2.4677 0.0105 6 8 3.7261 3.5218 0.0152 7 7 5.6799 2.4652 0.0105 8 6 6.4147 3.7326 0.0167 9 6 7.9184 3.4503 0.0148 10 6 8.6858 4.7739 0.0219 11 6 10.1669 4.4958 0.0206 12 1 10.5251 3.4770 0.0157 13 6 11.0648 5.5422 0.0257 14 7 10.6287 6.7829 0.0322 15 14 12.9008 5.1975 0.0249 16 1 13.1289 3.7302 0.0176 17 1 13.5169 5.7998 -1.1847 18 1 13.5159 5.7887 1.2404 19 6 4.2876 -0.0215 -0.0006 20 6 3.5947 -1.2101 -0.0059 21 6 2.2022 -1.2059 -0.0059 22 7 1.5048 -2.4088 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6545 2.1276 0.0004 27 1 6.1634 1.6243 0.0065 28 1 6.1524 4.3090 -0.8704 29 1 6.1524 4.3003 0.9095 30 1 8.1809 2.8737 0.9017 31 1 8.1804 2.8828 -0.8782 32 1 8.4233 5.3509 -0.8649 33 1 8.4238 5.3411 0.9151 34 1 11.2604 7.5191 0.0355 35 1 5.3676 -0.0254 -0.0009 36 1 4.1313 -2.1473 -0.0105 37 1 0.5349 -2.4070 -0.0112 38 1 1.9884 -3.2497 -0.0149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079866489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = -59.534350 kcal Electronic energy + Delta-G solvation = -18344.840086 eV Core-core repulsion = 15377.896422 eV Total energy + Delta-G solvation = -2966.943664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21915 -39.80742 -36.96669 -35.60506 -35.15939 -33.60583 -32.87232 -30.28875 -28.68657 -27.52854 -25.28147 -23.64771 -22.99539 -22.28880 -20.88288 -18.72678 -18.37941 -18.12230 -17.65654 -16.80877 -16.67752 -16.40308 -15.46151 -15.42866 -15.00307 -14.76321 -14.73666 -14.30616 -14.07630 -13.74371 -13.54536 -13.53140 -13.12658 -12.77257 -12.72751 -12.54112 -12.34332 -11.91375 -11.68917 -11.59711 -11.57677 -11.22649 -10.88072 -10.55773 -10.11794 -9.77258 -8.45070 -8.18973 -6.30615 0.09321 0.46900 1.42280 1.42666 1.56029 1.94103 2.24074 2.43679 2.94718 2.97783 3.14789 3.83397 3.87896 3.96035 4.18147 4.21448 4.31631 4.40485 4.55067 4.64270 4.73528 4.82555 4.94307 4.98455 5.01136 5.16774 5.25700 5.28123 5.39695 5.44744 5.52497 5.56357 5.70847 5.84550 5.84692 6.22656 6.50715 6.61664 6.87123 6.94504 7.27193 7.39052 8.93544 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045410 B = 0.002911 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.453910 B = 9616.648791 C =10202.050516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.186 4.186 3 C -0.027 4.027 4 C -0.218 4.218 5 C 0.553 3.447 6 O -0.599 6.599 7 N -0.713 5.713 8 C 0.130 3.870 9 C -0.101 4.101 10 C 0.023 3.977 11 C -0.539 4.539 12 H 0.068 0.932 13 C -0.005 4.005 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.257 1.257 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.037 4.037 20 C -0.206 4.206 21 C 0.248 3.752 22 N -0.852 5.852 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.413 0.587 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.069 0.931 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.409 0.591 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.833 -23.526 -0.112 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.191 4.191 3 C -0.047 4.047 4 C -0.223 4.223 5 C 0.344 3.656 6 O -0.482 6.482 7 N -0.365 5.365 8 C 0.006 3.994 9 C -0.139 4.139 10 C -0.015 4.015 11 C -0.577 4.577 12 H 0.086 0.914 13 C -0.203 4.203 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.057 4.057 20 C -0.229 4.229 21 C 0.138 3.862 22 N -0.391 5.391 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.251 0.749 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.240 0.760 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -19.182 -22.628 -0.109 29.665 hybrid contribution 1.035 0.224 -0.001 1.059 sum -18.147 -22.405 -0.109 28.832 Atomic orbital electron populations 1.20649 0.89153 1.03436 1.02832 1.19516 0.97397 0.90982 1.11208 1.20914 0.92528 0.98068 0.93198 1.19534 0.94406 0.92067 1.16327 1.18787 0.82216 0.89532 0.75081 1.90718 1.69355 1.34909 1.53192 1.45866 1.05875 1.10106 1.74604 1.21249 0.92020 0.85565 1.00611 1.21599 0.91009 0.99057 1.02213 1.18955 0.94561 0.92909 0.95056 1.21709 0.92419 0.93293 1.50289 0.91423 1.26053 1.04589 0.94826 0.94792 1.70127 1.36307 0.99441 1.51806 0.85340 0.78766 0.78951 0.77609 1.18089 1.20578 1.20573 1.21231 1.00447 0.90690 0.93305 1.20793 0.92037 0.99119 1.10905 1.17882 0.91556 0.86859 0.89911 1.42519 1.09980 1.04701 1.81858 0.90735 0.90074 0.91556 0.86494 0.74932 0.93316 0.93312 0.91241 0.91233 0.98985 0.98989 0.92814 0.83880 0.82704 0.75974 0.75728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.56 71.24 0.68 -0.57 16 2 C -0.19 -3.38 5.89 -19.78 -0.12 -3.50 16 3 C -0.03 -0.68 9.23 22.50 0.21 -0.47 16 4 C -0.22 -5.83 5.88 -20.08 -0.12 -5.95 16 5 C 0.55 18.98 7.76 86.69 0.67 19.65 16 6 O -0.60 -25.77 16.34 -4.03 -0.07 -25.84 16 7 N -0.71 -22.28 5.51 -466.27 -2.57 -24.85 16 8 C 0.13 4.94 5.67 86.38 0.49 5.43 16 9 C -0.10 -4.04 5.27 30.59 0.16 -3.87 16 10 C 0.02 1.22 4.97 29.85 0.15 1.37 16 11 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 12 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 13 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 14 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 15 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 16 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C -0.04 -0.72 9.53 22.50 0.21 -0.51 16 20 C -0.21 -3.07 9.87 22.36 0.22 -2.85 16 21 C 0.25 3.59 6.73 38.47 0.26 3.85 16 22 N -0.85 -5.65 8.96 -51.38 -0.46 -6.11 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.58 6.54 -2.39 -0.02 0.56 16 25 H 0.07 0.86 8.08 -2.38 -0.02 0.84 16 26 H 0.12 3.21 7.64 -2.91 -0.02 3.19 16 27 H 0.41 9.88 6.49 -92.71 -0.60 9.28 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.14 2.16 6.39 -2.91 -0.02 2.14 16 36 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.41 1.48 6.79 -92.71 -0.63 0.85 16 38 H 0.41 1.01 8.83 -92.71 -0.82 0.19 16 Total: -1.00 -76.17 321.74 1.78 -74.39 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.96 Total: 11.43 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.52 Total: -17.52 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.74 Total: -88.68 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -76.17 1.78 -74.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.854 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds