Wall clock time and date at job start Mon Mar 30 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38309 * 119.96423 * 2 1 4 4 C 1.38259 * 120.13867 * 180.23598 * 3 2 1 5 5 C 1.38130 * 120.07461 * 359.48526 * 4 3 2 6 6 C 1.38867 * 119.92383 * 0.25860 * 5 4 3 7 7 N 1.39905 * 120.06375 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00659 * 328.46615 * 7 6 5 9 9 O 1.21596 * 119.99947 * 7.13601 * 8 7 6 10 10 N 1.34773 * 120.00438 * 187.13214 * 8 7 6 11 11 C 1.37174 * 120.00095 * 188.66801 * 10 8 7 12 12 H 1.07994 * 119.99778 * 214.25841 * 11 10 8 13 13 C 1.38876 * 119.99808 * 34.25923 * 11 10 8 14 14 N 1.31470 * 120.00394 * 12.28066 * 13 11 10 15 15 Si 1.86804 * 119.99686 * 192.28298 * 13 11 10 16 16 H 1.48505 * 109.46991 * 90.00158 * 15 13 11 17 17 H 1.48499 * 109.46870 * 209.99821 * 15 13 11 18 18 H 1.48501 * 109.47346 * 329.99997 * 15 13 11 19 19 C 1.46504 * 119.99934 * 8.67175 * 10 8 7 20 20 C 1.53000 * 109.47196 * 126.94261 * 19 10 8 21 21 C 1.52997 * 109.46807 * 246.94383 * 19 10 8 22 22 C 1.38088 * 119.96439 * 179.72225 * 2 1 3 23 23 H 1.09001 * 109.47113 * 270.27890 * 1 2 3 24 24 H 1.08997 * 109.47318 * 30.27500 * 1 2 3 25 25 H 1.09002 * 109.47342 * 150.27904 * 1 2 3 26 26 H 1.08004 * 119.92793 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.96245 * 179.76811 * 4 3 2 28 28 H 1.07999 * 120.03846 * 180.23309 * 5 4 3 29 29 H 0.97001 * 119.99655 * 148.46927 * 7 6 5 30 30 H 0.97000 * 120.00213 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47079 * 6.94278 * 19 10 8 32 32 H 1.08999 * 109.46731 * 65.47400 * 20 19 10 33 33 H 1.08993 * 109.46844 * 185.46783 * 20 19 10 34 34 H 1.08996 * 109.47389 * 305.47487 * 20 19 10 35 35 H 1.09005 * 109.47244 * 64.55064 * 21 19 10 36 36 H 1.09005 * 109.47041 * 184.54398 * 21 19 10 37 37 H 1.08996 * 109.47779 * 304.54728 * 21 19 10 38 38 H 1.08000 * 120.03402 * 0.04218 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0049 5 6 4.2763 0.0092 0.0009 6 6 3.5856 -1.1955 0.0062 7 7 4.2875 -2.4057 0.0116 8 6 5.4861 -2.4924 -0.5985 9 8 6.0173 -1.4918 -1.0401 10 7 6.0960 -3.6882 -0.7190 11 6 7.3874 -3.7564 -1.1764 12 1 7.7024 -4.5936 -1.7816 13 6 8.2898 -2.7489 -0.8612 14 7 7.9895 -1.8626 0.0621 15 14 9.9305 -2.6532 -1.7493 16 1 9.7888 -1.8061 -2.9609 17 1 10.9483 -2.0589 -0.8460 18 1 10.3585 -4.0184 -2.1471 19 6 5.3797 -4.9152 -0.3616 20 6 5.4402 -5.9001 -1.5309 21 6 6.0316 -5.5457 0.8706 22 6 2.1967 -1.1963 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6561 2.1325 -0.0004 27 1 4.1170 2.1398 -0.0087 28 1 5.3563 0.0132 0.0008 29 1 3.9114 -3.1825 0.4544 30 1 8.6196 -1.1587 0.2820 31 1 4.3392 -4.6772 -0.1405 32 1 6.4722 -6.2130 -1.6892 33 1 4.8270 -6.7720 -1.3036 34 1 5.0647 -5.4168 -2.4328 35 1 5.9170 -4.8776 1.7242 36 1 5.5504 -6.4992 1.0884 37 1 7.0917 -5.7095 0.6772 38 1 1.6567 -2.1316 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080213954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:49 Heat of formation + Delta-G solvation = 20.492561 kcal Electronic energy + Delta-G solvation = -20182.945156 eV Core-core repulsion = 17219.471719 eV Total energy + Delta-G solvation = -2963.473436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65622 -38.16764 -35.51350 -33.95323 -32.05199 -31.87541 -30.08408 -28.78195 -26.53684 -26.38806 -24.82205 -21.92685 -21.58255 -20.57798 -19.15612 -17.89313 -16.20017 -15.82440 -15.49214 -14.89643 -14.39082 -13.93482 -13.73045 -13.44317 -13.25644 -13.19571 -13.02254 -12.54555 -12.34191 -11.94644 -11.73985 -11.64055 -11.41835 -11.17877 -11.02195 -10.87454 -10.68405 -10.57742 -10.48130 -10.15437 -9.98814 -9.36347 -8.91559 -8.26644 -8.01162 -7.22649 -7.08515 -5.96596 -3.72006 1.94261 2.01041 3.34890 3.40094 3.43159 3.91412 4.32384 4.45454 4.90245 5.18433 5.22411 5.30450 5.42097 5.52106 5.58895 5.70184 5.74188 5.87782 5.92713 5.96893 6.00662 6.16355 6.21596 6.35608 6.44001 6.46041 6.49661 6.60129 6.85746 6.97229 7.00483 7.10455 7.20336 7.39492 7.60076 7.84754 7.94202 8.52672 9.14629 9.40751 9.76106 10.49184 11.07950 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.006659 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.095582 B = 4203.721371 C = 5174.786932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.163 4.163 4 C -0.101 4.101 5 C -0.133 4.133 6 C 0.200 3.800 7 N -0.701 5.701 8 C 0.663 3.337 9 O -0.538 6.538 10 N -0.465 5.465 11 C -0.324 4.324 12 H 0.083 0.917 13 C 0.051 3.949 14 N -0.822 5.822 15 Si 0.913 3.087 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.129 3.871 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.173 4.173 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.390 0.610 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 -1.595 1.883 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.077 4.077 3 C -0.182 4.182 4 C -0.120 4.120 5 C -0.153 4.153 6 C 0.101 3.899 7 N -0.349 5.349 8 C 0.367 3.633 9 O -0.411 6.411 10 N -0.190 5.190 11 C -0.451 4.451 12 H 0.101 0.899 13 C -0.158 4.158 14 N -0.458 5.458 15 Si 0.741 3.259 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.201 1.201 19 C 0.024 3.976 20 C -0.208 4.208 21 C -0.209 4.209 22 C -0.195 4.195 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.175 0.825 29 H 0.225 0.775 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.281 -0.823 1.598 10.437 hybrid contribution 0.669 -0.311 -0.090 0.744 sum -9.612 -1.134 1.508 9.796 Atomic orbital electron populations 1.20708 0.91880 1.02128 1.01664 1.19479 0.95159 0.92761 1.00276 1.20776 0.94287 0.96759 1.06390 1.21028 0.93808 0.97800 0.99392 1.21834 1.03027 0.90331 1.00152 1.17634 0.89974 0.86310 0.95989 1.43160 1.21787 1.10894 1.59087 1.15788 0.79363 0.85408 0.82719 1.90695 1.62826 1.34416 1.53187 1.42626 1.12425 1.01005 1.62983 1.18850 0.83817 1.10482 1.31960 0.89933 1.25103 0.98150 0.96877 0.95666 1.69976 1.34881 1.13985 1.26912 0.86186 0.82272 0.78004 0.79455 1.20742 1.21480 1.20092 1.20926 0.94500 0.87922 0.94282 1.22015 1.02213 0.98049 0.98538 1.22063 1.02477 0.98724 0.97680 1.20608 0.92316 0.97650 1.08926 0.91753 0.92012 0.92041 0.87187 0.86693 0.82457 0.77464 0.93025 0.92476 0.91831 0.93374 0.92923 0.93299 0.93745 0.91301 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.08 -1.16 5.88 -104.65 -0.62 -1.77 16 3 C -0.16 -2.55 9.70 -39.55 -0.38 -2.93 16 4 C -0.10 -1.81 10.04 -39.61 -0.40 -2.21 16 5 C -0.13 -2.85 8.75 -39.39 -0.34 -3.19 16 6 C 0.20 4.06 6.37 -83.70 -0.53 3.53 16 7 N -0.70 -14.84 5.14 -14.23 -0.07 -14.92 16 8 C 0.66 17.03 7.22 -86.93 -0.63 16.40 16 9 O -0.54 -15.81 10.56 5.28 0.06 -15.76 16 10 N -0.46 -11.33 2.52 -113.05 -0.29 -11.62 16 11 C -0.32 -8.62 8.27 -14.92 -0.12 -8.74 16 12 H 0.08 2.11 6.65 -52.49 -0.35 1.76 16 13 C 0.05 1.43 4.62 -17.47 -0.08 1.35 16 14 N -0.82 -24.13 10.58 55.49 0.59 -23.54 16 15 Si 0.91 21.82 29.57 -169.99 -5.03 16.79 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.13 2.44 3.08 -67.93 -0.21 2.23 16 20 C -0.15 -2.52 8.89 37.16 0.33 -2.19 16 21 C -0.15 -2.66 9.32 37.16 0.35 -2.32 16 22 C -0.17 -2.91 9.61 -39.40 -0.38 -3.29 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 27 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 28 H 0.16 4.00 5.87 -52.49 -0.31 3.69 16 29 H 0.39 7.05 6.50 -40.82 -0.27 6.78 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.96 5.80 -51.93 -0.30 0.66 16 32 H 0.06 1.12 7.06 -51.93 -0.37 0.75 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -31.81 310.39 -8.07 -39.88 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.35 Total: 8.45 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.66 Total: -3.97 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.23 Total: -50.07 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.06 Total: -15.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.81 -8.07 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.374 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds