Wall clock time and date at job start Mon Mar 30 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38309 * 119.96423 * 2 1 4 4 C 1.38259 * 120.13867 * 180.23598 * 3 2 1 5 5 C 1.38130 * 120.07461 * 359.48526 * 4 3 2 6 6 C 1.38867 * 119.92383 * 0.25860 * 5 4 3 7 7 N 1.39905 * 120.06375 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00659 * 328.46615 * 7 6 5 9 9 O 1.21596 * 119.99947 * 7.13601 * 8 7 6 10 10 N 1.34773 * 120.00438 * 187.13214 * 8 7 6 11 11 C 1.37174 * 120.00095 * 188.66801 * 10 8 7 12 12 H 1.07994 * 119.99778 * 214.25841 * 11 10 8 13 13 C 1.38876 * 119.99808 * 34.25923 * 11 10 8 14 14 N 1.31470 * 120.00394 * 12.28066 * 13 11 10 15 15 Si 1.86804 * 119.99686 * 192.28298 * 13 11 10 16 16 H 1.48505 * 109.46991 * 90.00158 * 15 13 11 17 17 H 1.48499 * 109.46870 * 209.99821 * 15 13 11 18 18 H 1.48501 * 109.47346 * 329.99997 * 15 13 11 19 19 C 1.46504 * 119.99934 * 8.67175 * 10 8 7 20 20 C 1.53000 * 109.47196 * 126.94261 * 19 10 8 21 21 C 1.52997 * 109.46807 * 246.94383 * 19 10 8 22 22 C 1.38088 * 119.96439 * 179.72225 * 2 1 3 23 23 H 1.09001 * 109.47113 * 270.27890 * 1 2 3 24 24 H 1.08997 * 109.47318 * 30.27500 * 1 2 3 25 25 H 1.09002 * 109.47342 * 150.27904 * 1 2 3 26 26 H 1.08004 * 119.92793 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.96245 * 179.76811 * 4 3 2 28 28 H 1.07999 * 120.03846 * 180.23309 * 5 4 3 29 29 H 0.97001 * 119.99655 * 148.46927 * 7 6 5 30 30 H 0.97000 * 120.00213 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47079 * 6.94278 * 19 10 8 32 32 H 1.08999 * 109.46731 * 65.47400 * 20 19 10 33 33 H 1.08993 * 109.46844 * 185.46783 * 20 19 10 34 34 H 1.08996 * 109.47389 * 305.47487 * 20 19 10 35 35 H 1.09005 * 109.47244 * 64.55064 * 21 19 10 36 36 H 1.09005 * 109.47041 * 184.54398 * 21 19 10 37 37 H 1.08996 * 109.47779 * 304.54728 * 21 19 10 38 38 H 1.08000 * 120.03402 * 0.04218 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0049 5 6 4.2763 0.0092 0.0009 6 6 3.5856 -1.1955 0.0062 7 7 4.2875 -2.4057 0.0116 8 6 5.4861 -2.4924 -0.5985 9 8 6.0173 -1.4918 -1.0401 10 7 6.0960 -3.6882 -0.7190 11 6 7.3874 -3.7564 -1.1764 12 1 7.7024 -4.5936 -1.7816 13 6 8.2898 -2.7489 -0.8612 14 7 7.9895 -1.8626 0.0621 15 14 9.9305 -2.6532 -1.7493 16 1 9.7888 -1.8061 -2.9609 17 1 10.9483 -2.0589 -0.8460 18 1 10.3585 -4.0184 -2.1471 19 6 5.3797 -4.9152 -0.3616 20 6 5.4402 -5.9001 -1.5309 21 6 6.0316 -5.5457 0.8706 22 6 2.1967 -1.1963 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6561 2.1325 -0.0004 27 1 4.1170 2.1398 -0.0087 28 1 5.3563 0.0132 0.0008 29 1 3.9114 -3.1825 0.4544 30 1 8.6196 -1.1587 0.2820 31 1 4.3392 -4.6772 -0.1405 32 1 6.4722 -6.2130 -1.6892 33 1 4.8270 -6.7720 -1.3036 34 1 5.0647 -5.4168 -2.4328 35 1 5.9170 -4.8776 1.7242 36 1 5.5504 -6.4992 1.0884 37 1 7.0917 -5.7095 0.6772 38 1 1.6567 -2.1316 0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080213954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:49 Heat of formation + Delta-G solvation = 1.402466 kcal Electronic energy + Delta-G solvation = -20183.772965 eV Core-core repulsion = 17219.471719 eV Total energy + Delta-G solvation = -2964.301245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32379 -39.69996 -37.18483 -35.69691 -33.95620 -33.19471 -31.80568 -30.32328 -27.92318 -27.55780 -26.76700 -23.46931 -23.07017 -22.12602 -20.87807 -19.63174 -17.80929 -17.58851 -16.94892 -16.72084 -15.92946 -15.68002 -15.35235 -14.93530 -14.76560 -14.58520 -14.43450 -13.92728 -13.74342 -13.46871 -13.17668 -12.95814 -12.90334 -12.82164 -12.64243 -12.45504 -12.33244 -12.12795 -11.95998 -11.89455 -11.57988 -11.05798 -10.81941 -10.06622 -9.51881 -9.10894 -8.75078 -8.04369 -5.80896 0.56232 0.61264 1.39819 1.46409 1.51746 2.19683 2.54898 2.81213 3.11341 3.40617 3.58587 4.05827 4.10097 4.10584 4.39244 4.43475 4.44978 4.58265 4.67167 4.75262 4.89681 4.96337 4.98385 5.02897 5.07134 5.08517 5.10137 5.34457 5.44462 5.51215 5.57867 5.63363 5.69068 5.80085 5.93215 6.06642 6.40340 6.56812 7.15212 7.48039 7.85305 8.57374 8.99545 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021868 B = 0.006659 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.095582 B = 4203.721371 C = 5174.786932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.069 4.069 3 C -0.154 4.154 4 C -0.107 4.107 5 C -0.171 4.171 6 C 0.169 3.831 7 N -0.692 5.692 8 C 0.654 3.346 9 O -0.586 6.586 10 N -0.479 5.479 11 C -0.326 4.326 12 H 0.091 0.909 13 C -0.004 4.004 14 N -0.859 5.859 15 Si 0.971 3.029 16 H -0.295 1.295 17 H -0.289 1.289 18 H -0.252 1.252 19 C 0.119 3.881 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.166 4.166 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.404 0.596 30 H 0.249 0.751 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 -2.749 1.836 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.070 4.070 3 C -0.173 4.173 4 C -0.126 4.126 5 C -0.192 4.192 6 C 0.072 3.928 7 N -0.342 5.342 8 C 0.357 3.643 9 O -0.463 6.463 10 N -0.204 5.204 11 C -0.455 4.455 12 H 0.108 0.892 13 C -0.209 4.209 14 N -0.496 5.496 15 Si 0.798 3.202 16 H -0.222 1.222 17 H -0.215 1.215 18 H -0.176 1.176 19 C 0.015 3.985 20 C -0.200 4.200 21 C -0.200 4.200 22 C -0.187 4.187 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.165 0.835 27 H 0.144 0.856 28 H 0.123 0.877 29 H 0.241 0.759 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.451 -2.028 1.569 13.693 hybrid contribution 1.466 0.073 -0.074 1.470 sum -11.985 -1.955 1.495 12.235 Atomic orbital electron populations 1.20796 0.88179 1.03756 1.03344 1.20060 0.97690 0.91753 0.97471 1.21196 0.93103 0.98783 1.04205 1.21190 0.95304 0.96901 0.99220 1.21535 1.00876 0.92829 1.03948 1.17928 0.91517 0.85357 0.98008 1.42810 1.20642 1.11936 1.58836 1.16149 0.80202 0.85245 0.82657 1.90667 1.64438 1.36163 1.55017 1.42865 1.12130 1.02490 1.62959 1.19154 0.84781 1.10169 1.31387 0.89187 1.25944 1.01530 0.96926 0.96487 1.70140 1.35705 1.14786 1.28940 0.85270 0.78721 0.78665 0.77580 1.22208 1.21544 1.17590 1.21286 0.95154 0.86298 0.95768 1.21947 1.02312 0.98720 0.96984 1.21973 1.01292 1.00375 0.96327 1.20910 0.90532 0.99794 1.07508 0.89848 0.90217 0.90723 0.83508 0.85618 0.87683 0.75865 0.94152 0.90223 0.93010 0.89140 0.94097 0.94922 0.89305 0.93663 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.01 71.24 0.71 -1.08 16 2 C -0.07 -1.86 5.88 -19.88 -0.12 -1.98 16 3 C -0.15 -4.40 9.70 22.29 0.22 -4.19 16 4 C -0.11 -3.88 10.04 22.25 0.22 -3.65 16 5 C -0.17 -7.76 8.75 22.39 0.20 -7.57 16 6 C 0.17 7.00 6.37 38.16 0.24 7.24 16 7 N -0.69 -29.99 5.14 -317.19 -1.63 -31.62 16 8 C 0.65 35.03 7.22 179.06 1.29 36.32 16 9 O -0.59 -36.79 10.56 -4.02 -0.04 -36.83 16 10 N -0.48 -23.88 2.52 -629.84 -1.59 -25.47 16 11 C -0.33 -17.85 8.27 84.01 0.70 -17.16 16 12 H 0.09 4.66 6.65 -2.91 -0.02 4.64 16 13 C 0.00 -0.22 4.62 84.90 0.39 0.17 16 14 N -0.86 -53.48 10.58 21.65 0.23 -53.25 16 15 Si 0.97 46.46 29.57 68.60 2.03 48.49 16 16 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 19 C 0.12 4.36 3.08 44.99 0.14 4.50 16 20 C -0.14 -4.46 8.89 71.98 0.64 -3.82 16 21 C -0.14 -4.81 9.32 71.98 0.67 -4.14 16 22 C -0.17 -5.23 9.61 22.39 0.22 -5.01 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 26 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 27 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.11 5.92 5.87 -2.91 -0.02 5.90 16 29 H 0.40 14.45 6.50 -92.71 -0.60 13.85 16 30 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.08 2.53 5.80 -2.39 -0.01 2.52 16 32 H 0.05 1.74 7.06 -2.39 -0.02 1.72 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.04 1.74 7.70 -2.39 -0.02 1.72 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -75.39 310.39 4.97 -70.42 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.46 Total: 28.61 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.52 Total: -0.35 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -2.99 Total: -110.34 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.04 Total: -36.83 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -75.39 4.97 -70.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.821 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds