Wall clock time and date at job start Mon Mar 30 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08988 * 109.46998 * 2 1 4 4 O 1.42897 * 109.46878 * 239.99602 * 2 1 3 5 5 C 1.50701 * 109.46755 * 120.00126 * 2 1 3 6 6 C 1.38170 * 120.02909 * 94.24262 * 5 2 1 7 7 C 1.38246 * 120.05083 * 180.25489 * 6 5 2 8 8 C 1.38282 * 120.11474 * 359.75852 * 7 6 5 9 9 C 1.38128 * 120.05768 * 0.02562 * 8 7 6 10 10 C 1.38715 * 120.02566 * 274.00213 * 5 2 1 11 11 O 1.35899 * 120.05507 * 0.02562 * 10 5 2 12 12 C 1.42903 * 116.99949 * 184.72333 * 11 10 5 13 13 C 1.52998 * 109.47334 * 184.52896 * 12 11 10 14 14 C 1.50704 * 115.55023 * 303.15711 * 13 12 11 15 15 H 1.07999 * 120.00165 * 95.20761 * 14 13 12 16 16 C 1.37879 * 119.99555 * 275.20964 * 14 13 12 17 17 N 1.31519 * 120.00005 * 5.63236 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 185.64027 * 16 14 13 19 19 H 1.48501 * 109.47170 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46916 * 299.99579 * 18 16 14 21 21 H 1.48498 * 109.47409 * 59.99618 * 18 16 14 22 22 C 1.52999 * 117.49694 * 88.81820 * 13 12 11 23 23 C 1.52994 * 117.49897 * 157.48003 * 13 12 11 24 24 H 1.09000 * 109.47052 * 60.00251 * 1 2 3 25 25 H 1.09003 * 109.47457 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47609 * 300.00272 * 1 2 3 27 27 H 0.96700 * 114.00252 * 60.00490 * 4 2 1 28 28 H 1.07997 * 119.97149 * 359.97438 * 6 5 2 29 29 H 1.08006 * 119.94080 * 179.74447 * 7 6 5 30 30 H 1.07997 * 119.97512 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.03073 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.46737 * 64.53341 * 12 11 10 33 33 H 1.08997 * 109.47188 * 304.53151 * 12 11 10 34 34 H 0.96993 * 120.00182 * 355.11715 * 17 16 14 35 35 H 1.09001 * 117.50142 * 215.00498 * 22 13 12 36 36 H 1.08999 * 117.50040 * 0.03100 * 22 13 12 37 37 H 1.08993 * 117.50245 * 359.97438 * 23 13 12 38 38 H 1.09003 * 117.49837 * 144.97723 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2305 6 6 2.3461 -2.0548 1.1730 7 6 2.8019 -2.7082 2.3028 8 6 2.9496 -2.0175 3.4917 9 6 2.6414 -0.6724 3.5532 10 6 2.1846 -0.0141 2.4205 11 8 1.8806 1.3092 2.4784 12 6 2.1593 1.9857 3.7059 13 6 1.6507 3.4262 3.6213 14 6 2.2014 4.2441 2.4816 15 1 1.6485 4.3233 1.5572 16 6 3.4111 4.8912 2.6190 17 7 4.1367 4.7063 3.7002 18 14 4.0193 6.0307 1.2696 19 1 5.3354 6.5988 1.6573 20 1 4.1628 5.2669 0.0041 21 1 3.0431 7.1326 1.0747 22 6 0.2052 3.6910 4.0469 23 6 1.3622 4.1519 4.9369 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7210 -0.2702 -1.9979 28 1 2.2310 -2.5966 0.2459 29 1 3.0428 -3.7601 2.2570 30 1 3.3054 -2.5303 4.3730 31 1 2.7565 -0.1335 4.4820 32 1 3.2350 1.9900 3.8822 33 1 1.6587 1.4712 4.5261 34 1 3.7899 4.1716 4.4314 35 1 -0.3475 4.4569 3.5027 36 1 -0.3833 2.8392 4.3877 37 1 1.5344 3.6031 5.8627 38 1 1.5711 5.2209 4.9783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:28 Heat of formation + Delta-G solvation = -49.350423 kcal Electronic energy + Delta-G solvation = -19973.796945 eV Core-core repulsion = 16975.002138 eV Total energy + Delta-G solvation = -2998.794807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92651 -37.75201 -36.71523 -35.95431 -31.96956 -31.89327 -29.81222 -28.82417 -26.69601 -24.88737 -23.64477 -21.93252 -21.35320 -20.69413 -19.40748 -17.58640 -17.04619 -16.70646 -15.69958 -15.19083 -15.04236 -14.26131 -14.14022 -13.88378 -13.83881 -13.74973 -12.97653 -12.54961 -12.50384 -12.30720 -11.94066 -11.88846 -11.53595 -11.03075 -10.89196 -10.84919 -10.60754 -10.44930 -10.26546 -10.12167 -9.92256 -9.69394 -8.61458 -8.56726 -8.50961 -8.39758 -7.70252 -6.38966 -4.12131 1.57792 1.77730 3.42177 3.43325 3.62046 3.80113 4.02123 4.37751 4.49114 5.00558 5.03983 5.22498 5.23384 5.30188 5.37851 5.47713 5.59679 5.64320 5.76119 5.93200 5.94034 5.99793 6.02615 6.10808 6.20809 6.28519 6.36906 6.39813 6.50127 6.66395 6.73044 6.74438 6.77766 7.07869 7.12001 7.17097 7.81207 8.02791 8.21059 8.39542 8.82879 9.60959 11.00207 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.006658 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.488261 B = 4204.339223 C = 4732.853337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.150 3.850 3 H 0.077 0.923 4 O -0.569 6.569 5 C -0.124 4.124 6 C -0.059 4.059 7 C -0.178 4.178 8 C -0.080 4.080 9 C -0.218 4.218 10 C 0.152 3.848 11 O -0.286 6.286 12 C 0.101 3.899 13 C 0.019 3.981 14 C -0.561 4.561 15 H 0.055 0.945 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.191 4.191 23 C -0.171 4.171 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.377 0.623 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -10.682 -3.226 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.092 3.908 3 H 0.095 0.905 4 O -0.375 6.375 5 C -0.125 4.125 6 C -0.077 4.077 7 C -0.196 4.196 8 C -0.098 4.098 9 C -0.237 4.237 10 C 0.105 3.895 11 O -0.197 6.197 12 C 0.026 3.974 13 C 0.018 3.982 14 C -0.599 4.599 15 H 0.073 0.927 16 C -0.179 4.179 17 N -0.542 5.542 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.228 4.228 23 C -0.208 4.208 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.224 0.776 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.610 -9.959 -3.360 11.113 hybrid contribution -1.468 -0.679 0.494 1.691 sum -5.078 -10.638 -2.866 12.131 Atomic orbital electron populations 1.22399 0.95834 1.02047 1.02802 1.20322 0.92525 0.95186 0.82799 0.90530 1.86442 1.77363 1.57784 1.15900 1.18888 1.07152 0.94119 0.92360 1.20746 0.95898 0.92888 0.98135 1.20932 1.05487 0.99866 0.93315 1.20891 0.97586 0.93585 0.97707 1.21252 1.07926 0.96125 0.98354 1.18969 0.93002 0.84485 0.93056 1.86210 1.77821 1.17015 1.38697 1.22613 0.99725 0.92833 0.82193 1.18994 0.93676 0.90022 0.95515 1.21180 1.08177 1.31470 0.99031 0.92684 1.25801 0.93253 0.97484 1.01379 1.70770 1.37474 1.39197 1.06735 0.83580 0.76262 0.75956 0.74776 1.20766 1.21353 1.21390 1.22912 0.92459 1.02200 1.05243 1.22790 1.03635 1.00727 0.93660 0.92392 0.92407 0.91026 0.77646 0.85303 0.86438 0.86336 0.85525 0.92269 0.94912 0.91707 0.89822 0.91356 0.91357 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.52 37.16 0.35 -2.08 16 2 C 0.15 2.44 3.53 -27.88 -0.10 2.34 16 3 H 0.08 1.42 7.66 -51.94 -0.40 1.02 16 4 O -0.57 -8.13 12.18 -35.23 -0.43 -8.56 16 5 C -0.12 -2.20 5.08 -104.47 -0.53 -2.73 16 6 C -0.06 -0.92 9.35 -39.60 -0.37 -1.29 16 7 C -0.18 -2.53 10.04 -39.56 -0.40 -2.93 16 8 C -0.08 -1.18 10.04 -39.61 -0.40 -1.57 16 9 C -0.22 -3.78 9.08 -39.43 -0.36 -4.14 16 10 C 0.15 2.95 6.65 -39.22 -0.26 2.69 16 11 O -0.29 -6.30 9.03 -19.42 -0.18 -6.47 16 12 C 0.10 2.26 4.62 37.16 0.17 2.43 16 13 C 0.02 0.45 1.22 -155.66 -0.19 0.26 16 14 C -0.56 -15.35 8.61 -34.44 -0.30 -15.64 16 15 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 17 N -0.91 -26.30 13.57 55.43 0.75 -25.55 16 18 Si 1.07 24.86 29.91 -169.99 -5.08 19.77 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.19 -4.07 9.94 -26.69 -0.27 -4.33 16 23 C -0.17 -3.78 8.66 -26.69 -0.23 -4.02 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.38 3.66 9.08 45.56 0.41 4.07 16 28 H 0.13 1.84 7.37 -52.49 -0.39 1.45 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 2.12 6.27 -52.49 -0.33 1.79 16 32 H 0.06 1.41 7.81 -51.93 -0.41 1.01 16 33 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 34 H 0.27 7.73 6.17 -40.82 -0.25 7.48 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -30.54 320.14 -7.82 -38.36 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.74 Total: 8.02 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -2.97 Total: -30.40 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.75 Total: -25.55 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.60 Total: -15.03 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.54 -7.82 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.990 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds