Wall clock time and date at job start Mon Mar 30 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08988 * 109.46998 * 2 1 4 4 O 1.42897 * 109.46878 * 239.99602 * 2 1 3 5 5 C 1.50701 * 109.46755 * 120.00126 * 2 1 3 6 6 C 1.38170 * 120.02909 * 94.24262 * 5 2 1 7 7 C 1.38246 * 120.05083 * 180.25489 * 6 5 2 8 8 C 1.38282 * 120.11474 * 359.75852 * 7 6 5 9 9 C 1.38128 * 120.05768 * 0.02562 * 8 7 6 10 10 C 1.38715 * 120.02566 * 274.00213 * 5 2 1 11 11 O 1.35899 * 120.05507 * 0.02562 * 10 5 2 12 12 C 1.42903 * 116.99949 * 184.72333 * 11 10 5 13 13 C 1.52998 * 109.47334 * 184.52896 * 12 11 10 14 14 C 1.50704 * 115.55023 * 303.15711 * 13 12 11 15 15 H 1.07999 * 120.00165 * 95.20761 * 14 13 12 16 16 C 1.37879 * 119.99555 * 275.20964 * 14 13 12 17 17 N 1.31519 * 120.00005 * 5.63236 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 185.64027 * 16 14 13 19 19 H 1.48501 * 109.47170 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46916 * 299.99579 * 18 16 14 21 21 H 1.48498 * 109.47409 * 59.99618 * 18 16 14 22 22 C 1.52999 * 117.49694 * 88.81820 * 13 12 11 23 23 C 1.52994 * 117.49897 * 157.48003 * 13 12 11 24 24 H 1.09000 * 109.47052 * 60.00251 * 1 2 3 25 25 H 1.09003 * 109.47457 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47609 * 300.00272 * 1 2 3 27 27 H 0.96700 * 114.00252 * 60.00490 * 4 2 1 28 28 H 1.07997 * 119.97149 * 359.97438 * 6 5 2 29 29 H 1.08006 * 119.94080 * 179.74447 * 7 6 5 30 30 H 1.07997 * 119.97512 * 179.97438 * 8 7 6 31 31 H 1.07998 * 120.03073 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.46737 * 64.53341 * 12 11 10 33 33 H 1.08997 * 109.47188 * 304.53151 * 12 11 10 34 34 H 0.96993 * 120.00182 * 355.11715 * 17 16 14 35 35 H 1.09001 * 117.50142 * 215.00498 * 22 13 12 36 36 H 1.08999 * 117.50040 * 0.03100 * 22 13 12 37 37 H 1.08993 * 117.50245 * 359.97438 * 23 13 12 38 38 H 1.09003 * 117.49837 * 144.97723 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2305 6 6 2.3461 -2.0548 1.1730 7 6 2.8019 -2.7082 2.3028 8 6 2.9496 -2.0175 3.4917 9 6 2.6414 -0.6724 3.5532 10 6 2.1846 -0.0141 2.4205 11 8 1.8806 1.3092 2.4784 12 6 2.1593 1.9857 3.7059 13 6 1.6507 3.4262 3.6213 14 6 2.2014 4.2441 2.4816 15 1 1.6485 4.3233 1.5572 16 6 3.4111 4.8912 2.6190 17 7 4.1367 4.7063 3.7002 18 14 4.0193 6.0307 1.2696 19 1 5.3354 6.5988 1.6573 20 1 4.1628 5.2669 0.0041 21 1 3.0431 7.1326 1.0747 22 6 0.2052 3.6910 4.0469 23 6 1.3622 4.1519 4.9369 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7210 -0.2702 -1.9979 28 1 2.2310 -2.5966 0.2459 29 1 3.0428 -3.7601 2.2570 30 1 3.3054 -2.5303 4.3730 31 1 2.7565 -0.1335 4.4820 32 1 3.2350 1.9900 3.8822 33 1 1.6587 1.4712 4.5261 34 1 3.7899 4.1716 4.4314 35 1 -0.3475 4.4569 3.5027 36 1 -0.3833 2.8392 4.3877 37 1 1.5344 3.6031 5.8627 38 1 1.5711 5.2209 4.9783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:27 Heat of formation + Delta-G solvation = -67.964829 kcal Electronic energy + Delta-G solvation = -19974.604126 eV Core-core repulsion = 16975.002138 eV Total energy + Delta-G solvation = -2999.601988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30460 -39.29962 -38.07024 -37.46594 -33.99736 -33.14728 -31.08619 -30.07460 -28.34122 -26.95739 -24.86830 -23.36977 -23.03654 -22.01626 -21.23513 -19.01980 -18.69771 -18.16569 -16.99887 -16.72503 -16.56968 -15.67066 -15.56929 -15.49295 -15.30945 -15.11425 -14.65101 -14.43836 -13.78323 -13.67910 -13.43491 -13.14502 -12.79241 -12.69530 -12.67688 -12.32716 -12.15642 -12.01906 -11.96637 -11.59071 -11.47273 -11.13845 -10.52964 -10.47321 -10.37092 -9.81623 -9.06616 -8.56860 -6.29464 0.33679 0.49170 1.51135 1.57796 1.77127 2.27163 2.56023 2.77557 3.18962 3.22550 3.27231 3.79977 3.95526 3.99612 4.12439 4.14870 4.22104 4.22678 4.31407 4.38152 4.44639 4.50875 4.60199 4.76803 4.77642 4.83669 4.91691 4.96599 5.09490 5.19512 5.25866 5.38518 5.44570 5.51184 5.55955 5.91637 6.12454 6.20948 6.55465 6.70955 6.85202 7.49324 8.83968 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.006658 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.488261 B = 4204.339223 C = 4732.853337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.041 0.959 4 O -0.572 6.572 5 C -0.141 4.141 6 C -0.063 4.063 7 C -0.164 4.164 8 C -0.078 4.078 9 C -0.230 4.230 10 C 0.113 3.887 11 O -0.310 6.310 12 C 0.117 3.883 13 C -0.018 4.018 14 C -0.571 4.571 15 H 0.038 0.962 16 C -0.019 4.019 17 N -0.932 5.932 18 Si 1.105 2.895 19 H -0.283 1.283 20 H -0.279 1.279 21 H -0.270 1.270 22 C -0.170 4.170 23 C -0.164 4.164 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.396 0.604 28 H 0.145 0.855 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -12.704 -3.600 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.095 3.905 3 H 0.059 0.941 4 O -0.380 6.380 5 C -0.142 4.142 6 C -0.081 4.081 7 C -0.182 4.182 8 C -0.096 4.096 9 C -0.248 4.248 10 C 0.067 3.933 11 O -0.223 6.223 12 C 0.042 3.958 13 C -0.019 4.019 14 C -0.609 4.609 15 H 0.057 0.943 16 C -0.219 4.219 17 N -0.568 5.568 18 Si 0.928 3.072 19 H -0.209 1.209 20 H -0.205 1.205 21 H -0.195 1.195 22 C -0.207 4.207 23 C -0.202 4.202 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.246 0.754 28 H 0.163 0.837 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.172 -11.992 -3.749 13.239 hybrid contribution -1.315 -0.188 0.559 1.441 sum -5.487 -12.180 -3.190 13.735 Atomic orbital electron populations 1.22299 0.94166 1.02846 1.02782 1.20113 0.93733 0.93283 0.83354 0.94117 1.86389 1.77589 1.57648 1.16400 1.19200 1.07474 0.95219 0.92293 1.21023 0.95561 0.92050 0.99470 1.21402 1.03028 1.01529 0.92268 1.21291 0.96484 0.92482 0.99351 1.21427 1.08182 0.97500 0.97727 1.19324 0.95585 0.83639 0.94740 1.86151 1.78815 1.18837 1.38515 1.22256 0.97978 0.92179 0.83385 1.19109 0.96066 0.90956 0.95723 1.21423 1.08181 1.31762 0.99513 0.94349 1.26984 0.93740 0.98539 1.02608 1.70857 1.38072 1.40462 1.07412 0.83082 0.76130 0.75058 0.72945 1.20865 1.20468 1.19496 1.22924 0.91377 1.02630 1.03787 1.22724 1.03839 0.99630 0.93984 0.90318 0.91076 0.93120 0.75381 0.83732 0.82642 0.82993 0.85708 0.95138 0.92620 0.92440 0.90082 0.88710 0.89057 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.52 71.98 0.69 -3.80 16 2 C 0.15 5.02 3.53 29.85 0.11 5.12 16 3 H 0.04 1.60 7.66 -2.39 -0.02 1.58 16 4 O -0.57 -15.60 12.18 -148.98 -1.81 -17.42 16 5 C -0.14 -4.94 5.08 -19.77 -0.10 -5.05 16 6 C -0.06 -1.83 9.35 22.26 0.21 -1.62 16 7 C -0.16 -4.11 10.04 22.28 0.22 -3.88 16 8 C -0.08 -2.10 10.04 22.25 0.22 -1.88 16 9 C -0.23 -7.84 9.08 22.37 0.20 -7.63 16 10 C 0.11 4.45 6.65 22.51 0.15 4.60 16 11 O -0.31 -14.16 9.03 -92.42 -0.83 -14.99 16 12 C 0.12 5.35 4.62 71.98 0.33 5.68 16 13 C -0.02 -0.89 1.22 -52.93 -0.06 -0.95 16 14 C -0.57 -32.17 8.61 25.60 0.22 -31.95 16 15 H 0.04 2.22 7.82 -2.91 -0.02 2.20 16 16 C -0.02 -1.08 5.39 84.65 0.46 -0.62 16 17 N -0.93 -55.45 13.57 21.45 0.29 -55.16 16 18 Si 1.10 50.86 29.91 68.60 2.05 52.91 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 C -0.17 -7.15 9.94 30.62 0.30 -6.85 16 23 C -0.16 -7.30 8.66 30.62 0.27 -7.03 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.40 7.08 9.08 -74.06 -0.67 6.41 16 28 H 0.14 3.69 7.37 -2.91 -0.02 3.67 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.13 4.17 6.27 -2.91 -0.02 4.15 16 32 H 0.03 1.52 7.81 -2.38 -0.02 1.51 16 33 H 0.06 2.21 7.12 -2.39 -0.02 2.19 16 34 H 0.27 15.58 6.17 -92.71 -0.57 15.01 16 35 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 38 H 0.07 3.35 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -67.55 320.14 3.48 -64.06 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.58 Total: 26.47 kcal Atomic # 6 Polarization: -59.09 SS G_CDS: 3.21 Total: -55.88 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.29 Total: -55.16 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -2.65 Total: -32.41 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -67.55 3.48 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.901 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds