Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46819 * 2 1 4 4 O 1.42905 * 109.47285 * 119.99331 * 2 1 3 5 5 C 1.50692 * 109.47290 * 239.99793 * 2 1 3 6 6 C 1.38171 * 120.03219 * 265.30388 * 5 2 1 7 7 C 1.38239 * 120.05901 * 180.29582 * 6 5 2 8 8 C 1.38289 * 120.11011 * 359.68182 * 7 6 5 9 9 C 1.38125 * 120.05755 * 359.97438 * 8 7 6 10 10 C 1.38715 * 120.02825 * 84.98108 * 5 2 1 11 11 O 1.35899 * 120.05450 * 0.02562 * 10 5 2 12 12 C 1.42902 * 116.99552 * 174.45102 * 11 10 5 13 13 C 1.53001 * 109.46839 * 184.87292 * 12 11 10 14 14 C 1.50704 * 115.55106 * 279.50484 * 13 12 11 15 15 H 1.07997 * 119.99647 * 123.79709 * 14 13 12 16 16 C 1.37872 * 119.99909 * 303.79817 * 14 13 12 17 17 N 1.31519 * 120.00135 * 189.46946 * 16 14 13 18 18 Si 1.86800 * 120.00173 * 9.46298 * 16 14 13 19 19 H 1.48504 * 109.47134 * 95.06295 * 18 16 14 20 20 H 1.48496 * 109.47503 * 215.06591 * 18 16 14 21 21 H 1.48500 * 109.46870 * 335.06692 * 18 16 14 22 22 C 1.53003 * 117.50043 * 133.79365 * 13 12 11 23 23 C 1.52996 * 60.00067 * 252.51250 * 22 13 12 24 24 H 1.09006 * 109.46890 * 175.06000 * 1 2 3 25 25 H 1.09002 * 109.47109 * 295.05163 * 1 2 3 26 26 H 1.08996 * 109.47303 * 55.06043 * 1 2 3 27 27 H 0.96701 * 113.99259 * 60.00766 * 4 2 1 28 28 H 1.07999 * 119.96865 * 359.97438 * 6 5 2 29 29 H 1.08005 * 119.94514 * 179.69536 * 7 6 5 30 30 H 1.08004 * 119.96627 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.02552 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47425 * 304.86962 * 12 11 10 33 33 H 1.09000 * 109.47664 * 64.87684 * 12 11 10 34 34 H 0.96992 * 120.00118 * 180.02562 * 17 16 14 35 35 H 1.09000 * 117.49656 * 0.02562 * 22 13 12 36 36 H 1.08998 * 117.49689 * 145.02139 * 22 13 12 37 37 H 1.09005 * 117.49678 * 252.51058 * 23 22 13 38 38 H 1.08996 * 117.51951 * 107.48447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.3552 -2.0525 -1.1706 7 6 2.8219 -2.7033 -2.2974 8 6 2.9606 -2.0148 -3.4886 9 6 2.6325 -0.6748 -3.5555 10 6 2.1647 -0.0191 -2.4257 11 8 1.8421 1.2995 -2.4886 12 6 2.1175 1.9768 -3.7164 13 6 1.8034 3.4659 -3.5590 14 6 0.3490 3.8402 -3.6845 15 1 -0.1423 4.3735 -2.8842 16 6 -0.3543 3.5019 -4.8211 17 7 -1.5621 3.9848 -5.0153 18 14 0.4084 2.3576 -6.0854 19 1 -0.0371 0.9651 -5.8252 20 1 -0.0198 2.7681 -7.4467 21 1 1.8885 2.4298 -5.9892 22 6 2.8381 4.4652 -4.0803 23 6 2.6567 4.2676 -2.5740 24 1 -0.3633 -1.0239 -0.0885 25 1 -0.3633 0.4352 0.9310 26 1 -0.3634 0.5885 -0.8424 27 1 1.7211 -1.5951 1.2330 28 1 2.2478 -2.5924 -0.2414 29 1 3.0784 -3.7513 -2.2473 30 1 3.3250 -2.5257 -4.3677 31 1 2.7406 -0.1377 -4.4862 32 1 3.1698 1.8526 -3.9718 33 1 1.4991 1.5570 -4.5097 34 1 -2.0569 3.7465 -5.8147 35 1 3.7424 4.0618 -4.5358 36 1 2.4669 5.3936 -4.5144 37 1 2.1662 5.0661 -2.0172 38 1 3.4416 3.7342 -2.0380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = -32.901780 kcal Electronic energy + Delta-G solvation = -20126.744596 eV Core-core repulsion = 17128.663056 eV Total energy + Delta-G solvation = -2998.081540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16204 -38.03793 -36.77821 -35.94585 -32.23581 -31.85756 -30.01241 -28.95432 -27.38270 -25.31103 -23.74013 -22.04984 -21.46638 -20.98245 -19.15659 -18.13012 -16.93765 -16.47445 -15.87766 -15.74569 -15.07095 -14.52565 -14.47168 -14.20209 -13.89557 -13.60090 -13.07181 -12.93611 -12.61627 -12.22304 -12.03349 -11.76729 -11.67527 -11.28487 -11.20334 -10.99725 -10.72967 -10.64947 -10.39363 -10.05356 -9.99506 -9.67076 -9.06932 -8.75803 -8.72416 -8.59704 -7.84692 -6.21381 -4.19382 1.40828 1.61665 3.14513 3.18899 3.26658 3.60931 3.86480 4.27542 4.50820 4.74865 4.85003 4.94322 5.09307 5.20089 5.31461 5.41933 5.45281 5.53609 5.56856 5.72095 5.76438 5.84403 5.93234 6.03796 6.09073 6.21114 6.25861 6.42570 6.45591 6.50164 6.58838 6.62116 6.64606 6.89138 6.95759 7.08516 7.63099 7.66411 7.87188 8.41653 8.83998 9.41193 10.90834 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.007149 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.133922 B = 3915.906890 C = 4291.563882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.153 3.847 3 H 0.115 0.885 4 O -0.561 6.561 5 C -0.155 4.155 6 C -0.078 4.078 7 C -0.168 4.168 8 C -0.081 4.081 9 C -0.214 4.214 10 C 0.151 3.849 11 O -0.290 6.290 12 C 0.095 3.905 13 C -0.001 4.001 14 C -0.480 4.480 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.890 5.890 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.260 1.260 22 C -0.190 4.190 23 C -0.172 4.172 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.367 0.633 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.266 0.734 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -11.679 5.107 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 H 0.133 0.867 4 O -0.366 6.366 5 C -0.156 4.156 6 C -0.096 4.096 7 C -0.186 4.186 8 C -0.099 4.099 9 C -0.233 4.233 10 C 0.104 3.896 11 O -0.202 6.202 12 C 0.021 3.979 13 C -0.002 4.002 14 C -0.517 4.517 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.526 5.526 18 Si 0.700 3.300 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.185 1.185 22 C -0.227 4.227 23 C -0.209 4.209 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.215 0.785 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.003 -10.928 5.232 14.520 hybrid contribution 0.098 -1.294 -1.395 1.905 sum 8.101 -12.222 3.837 15.156 Atomic orbital electron populations 1.22440 0.95202 1.02296 1.03605 1.20619 0.93221 0.96119 0.80565 0.86741 1.86631 1.77385 1.28701 1.43891 1.19894 1.06584 0.94574 0.94543 1.20607 0.97902 0.92776 0.98325 1.20879 1.04675 0.99888 0.93163 1.20903 0.97724 0.93523 0.97744 1.21337 1.07144 0.96420 0.98388 1.18963 0.92921 0.84658 0.93094 1.86196 1.77654 1.17784 1.38588 1.23149 0.97450 0.93779 0.83537 1.19239 0.94149 0.85679 1.01163 1.20290 0.90619 1.36928 1.03821 0.90083 1.24939 0.94662 0.95519 0.97310 1.69892 1.11916 1.43078 1.27731 0.87140 0.80196 0.81540 0.81104 1.20394 1.21828 1.18468 1.23150 1.00362 1.02745 0.96484 1.22673 1.02718 1.03703 0.91806 0.92859 0.91655 0.90171 0.78533 0.85880 0.86232 0.86153 0.85691 0.93798 0.92984 0.92388 0.91222 0.88834 0.89399 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.52 37.16 0.35 -2.22 16 2 C 0.15 2.32 3.55 -27.89 -0.10 2.22 16 3 H 0.11 1.94 7.69 -51.93 -0.40 1.54 16 4 O -0.56 -7.54 13.00 -35.23 -0.46 -8.00 16 5 C -0.15 -2.45 5.08 -104.47 -0.53 -2.98 16 6 C -0.08 -1.02 9.30 -39.61 -0.37 -1.39 16 7 C -0.17 -2.11 10.04 -39.56 -0.40 -2.51 16 8 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 9 C -0.21 -3.60 9.03 -39.43 -0.36 -3.95 16 10 C 0.15 2.76 6.65 -39.21 -0.26 2.50 16 11 O -0.29 -6.05 9.25 -19.42 -0.18 -6.22 16 12 C 0.09 2.04 3.37 37.16 0.13 2.17 16 13 C 0.00 -0.03 1.19 -155.66 -0.19 -0.22 16 14 C -0.48 -13.23 9.50 -34.44 -0.33 -13.56 16 15 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 18 Si 0.87 21.01 24.81 -169.99 -4.22 16.79 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -5.78 5.86 56.52 0.33 -5.45 16 22 C -0.19 -3.90 9.88 -26.73 -0.26 -4.16 16 23 C -0.17 -3.50 9.93 -26.73 -0.27 -3.76 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.37 3.44 7.32 45.56 0.33 3.77 16 28 H 0.12 1.20 6.41 -52.49 -0.34 0.87 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.13 2.10 6.33 -52.49 -0.33 1.76 16 32 H 0.04 0.85 7.42 -51.93 -0.39 0.46 16 33 H 0.05 1.18 2.60 -51.93 -0.14 1.05 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -30.38 310.83 -7.15 -37.53 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.68 Total: 8.26 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.07 Total: -27.27 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.64 Total: -14.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.22 Total: 16.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.38 -7.15 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.631 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds