Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46819 * 2 1 4 4 O 1.42905 * 109.47285 * 119.99331 * 2 1 3 5 5 C 1.50692 * 109.47290 * 239.99793 * 2 1 3 6 6 C 1.38171 * 120.03219 * 265.30388 * 5 2 1 7 7 C 1.38239 * 120.05901 * 180.29582 * 6 5 2 8 8 C 1.38289 * 120.11011 * 359.68182 * 7 6 5 9 9 C 1.38125 * 120.05755 * 359.97438 * 8 7 6 10 10 C 1.38715 * 120.02825 * 84.98108 * 5 2 1 11 11 O 1.35899 * 120.05450 * 0.02562 * 10 5 2 12 12 C 1.42902 * 116.99552 * 174.45102 * 11 10 5 13 13 C 1.53001 * 109.46839 * 184.87292 * 12 11 10 14 14 C 1.50704 * 115.55106 * 279.50484 * 13 12 11 15 15 H 1.07997 * 119.99647 * 123.79709 * 14 13 12 16 16 C 1.37872 * 119.99909 * 303.79817 * 14 13 12 17 17 N 1.31519 * 120.00135 * 189.46946 * 16 14 13 18 18 Si 1.86800 * 120.00173 * 9.46298 * 16 14 13 19 19 H 1.48504 * 109.47134 * 95.06295 * 18 16 14 20 20 H 1.48496 * 109.47503 * 215.06591 * 18 16 14 21 21 H 1.48500 * 109.46870 * 335.06692 * 18 16 14 22 22 C 1.53003 * 117.50043 * 133.79365 * 13 12 11 23 23 C 1.52996 * 60.00067 * 252.51250 * 22 13 12 24 24 H 1.09006 * 109.46890 * 175.06000 * 1 2 3 25 25 H 1.09002 * 109.47109 * 295.05163 * 1 2 3 26 26 H 1.08996 * 109.47303 * 55.06043 * 1 2 3 27 27 H 0.96701 * 113.99259 * 60.00766 * 4 2 1 28 28 H 1.07999 * 119.96865 * 359.97438 * 6 5 2 29 29 H 1.08005 * 119.94514 * 179.69536 * 7 6 5 30 30 H 1.08004 * 119.96627 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.02552 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47425 * 304.86962 * 12 11 10 33 33 H 1.09000 * 109.47664 * 64.87684 * 12 11 10 34 34 H 0.96992 * 120.00118 * 180.02562 * 17 16 14 35 35 H 1.09000 * 117.49656 * 0.02562 * 22 13 12 36 36 H 1.08998 * 117.49689 * 145.02139 * 22 13 12 37 37 H 1.09005 * 117.49678 * 252.51058 * 23 22 13 38 38 H 1.08996 * 117.51951 * 107.48447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.3552 -2.0525 -1.1706 7 6 2.8219 -2.7033 -2.2974 8 6 2.9606 -2.0148 -3.4886 9 6 2.6325 -0.6748 -3.5555 10 6 2.1647 -0.0191 -2.4257 11 8 1.8421 1.2995 -2.4886 12 6 2.1175 1.9768 -3.7164 13 6 1.8034 3.4659 -3.5590 14 6 0.3490 3.8402 -3.6845 15 1 -0.1423 4.3735 -2.8842 16 6 -0.3543 3.5019 -4.8211 17 7 -1.5621 3.9848 -5.0153 18 14 0.4084 2.3576 -6.0854 19 1 -0.0371 0.9651 -5.8252 20 1 -0.0198 2.7681 -7.4467 21 1 1.8885 2.4298 -5.9892 22 6 2.8381 4.4652 -4.0803 23 6 2.6567 4.2676 -2.5740 24 1 -0.3633 -1.0239 -0.0885 25 1 -0.3633 0.4352 0.9310 26 1 -0.3634 0.5885 -0.8424 27 1 1.7211 -1.5951 1.2330 28 1 2.2478 -2.5924 -0.2414 29 1 3.0784 -3.7513 -2.2473 30 1 3.3250 -2.5257 -4.3677 31 1 2.7406 -0.1377 -4.4862 32 1 3.1698 1.8526 -3.9718 33 1 1.4991 1.5570 -4.5097 34 1 -2.0569 3.7465 -5.8147 35 1 3.7424 4.0618 -4.5358 36 1 2.4669 5.3936 -4.5144 37 1 2.1662 5.0661 -2.0172 38 1 3.4416 3.7342 -2.0380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = -53.296045 kcal Electronic energy + Delta-G solvation = -20127.628958 eV Core-core repulsion = 17128.663056 eV Total energy + Delta-G solvation = -2998.965902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41083 -39.45085 -38.06802 -37.35710 -34.36725 -32.98079 -31.14070 -30.17998 -29.01367 -27.26029 -24.88836 -23.40077 -22.97594 -22.16420 -20.98695 -19.38602 -18.64504 -17.77908 -17.51940 -17.14207 -16.21098 -16.08280 -15.81184 -15.56629 -15.18448 -14.96683 -14.78683 -14.43391 -14.01592 -13.75084 -13.37314 -13.09617 -12.94488 -12.81099 -12.72497 -12.31643 -12.27726 -12.13440 -11.85560 -11.74892 -11.49276 -11.11854 -10.92092 -10.71557 -10.46271 -9.84825 -9.07704 -8.37742 -6.40166 0.31380 0.48266 1.21791 1.25652 1.35925 2.19288 2.25060 2.76091 2.90118 3.38016 3.45026 3.62992 3.82010 3.94985 3.98724 4.12683 4.16531 4.24436 4.25246 4.36864 4.40009 4.50099 4.53101 4.73862 4.79262 4.84244 4.93691 4.96398 5.09169 5.18697 5.22170 5.41525 5.44585 5.49632 5.54311 5.61057 5.89221 6.23477 6.49811 6.63566 6.80631 7.23633 8.78450 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.007149 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.133922 B = 3915.906890 C = 4291.563882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.086 0.914 4 O -0.563 6.563 5 C -0.167 4.167 6 C -0.075 4.075 7 C -0.156 4.156 8 C -0.082 4.082 9 C -0.233 4.233 10 C 0.111 3.889 11 O -0.314 6.314 12 C 0.103 3.897 13 C -0.035 4.035 14 C -0.485 4.485 15 H 0.032 0.968 16 C 0.022 3.978 17 N -0.942 5.942 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.226 1.226 22 C -0.172 4.172 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.387 0.613 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 -14.966 5.097 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.104 0.896 4 O -0.371 6.371 5 C -0.168 4.168 6 C -0.093 4.093 7 C -0.174 4.174 8 C -0.100 4.100 9 C -0.252 4.252 10 C 0.065 3.935 11 O -0.228 6.228 12 C 0.029 3.971 13 C -0.036 4.036 14 C -0.522 4.522 15 H 0.050 0.950 16 C -0.176 4.176 17 N -0.581 5.581 18 Si 0.759 3.241 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.149 1.149 22 C -0.209 4.209 23 C -0.197 4.197 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.238 0.762 28 H 0.178 0.822 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.715 -14.231 5.245 18.569 hybrid contribution -0.751 -0.338 -1.212 1.466 sum 9.963 -14.569 4.033 18.105 Atomic orbital electron populations 1.22360 0.95140 1.02990 1.02398 1.20307 0.93100 0.95138 0.81268 0.89635 1.86600 1.77345 1.30330 1.42853 1.20112 1.07069 0.95844 0.93798 1.21083 0.96341 0.91580 1.00247 1.21388 1.02340 1.01555 0.92129 1.21303 0.96777 0.92401 0.99547 1.21478 1.08087 0.97914 0.97704 1.19351 0.95429 0.83837 0.94867 1.86147 1.78905 1.19666 1.38085 1.22868 0.98387 0.92134 0.83727 1.19195 0.92053 0.87742 1.04600 1.20441 0.93386 1.36051 1.02353 0.94984 1.25774 0.95071 0.97075 0.99714 1.70043 1.13906 1.45248 1.28881 0.86119 0.81364 0.78830 0.77744 1.20412 1.21922 1.14916 1.23176 1.00061 1.01221 0.96465 1.22702 1.02190 1.02729 0.92111 0.90696 0.90890 0.93756 0.76215 0.82226 0.82343 0.83285 0.86257 0.91296 0.94497 0.92355 0.87818 0.89643 0.90335 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 9.52 71.98 0.69 -4.27 16 2 C 0.16 4.79 3.55 29.85 0.11 4.89 16 3 H 0.09 3.01 7.69 -2.38 -0.02 3.00 16 4 O -0.56 -13.85 13.00 -148.98 -1.94 -15.79 16 5 C -0.17 -5.03 5.08 -19.77 -0.10 -5.13 16 6 C -0.07 -1.66 9.30 22.25 0.21 -1.45 16 7 C -0.16 -3.17 10.04 22.28 0.22 -2.95 16 8 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 9 C -0.23 -7.39 9.03 22.37 0.20 -7.18 16 10 C 0.11 3.98 6.65 22.51 0.15 4.13 16 11 O -0.31 -13.31 9.25 -92.42 -0.85 -14.16 16 12 C 0.10 4.36 3.37 71.98 0.24 4.60 16 13 C -0.04 -1.63 1.19 -52.92 -0.06 -1.69 16 14 C -0.48 -28.12 9.50 25.60 0.24 -27.88 16 15 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 16 C 0.02 1.26 5.47 84.65 0.46 1.73 16 17 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 18 Si 0.93 44.06 24.81 68.60 1.70 45.76 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.23 -9.34 5.86 99.48 0.58 -8.76 16 22 C -0.17 -6.77 9.88 30.59 0.30 -6.47 16 23 C -0.16 -6.45 9.93 30.59 0.30 -6.15 16 24 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.39 5.81 7.32 -74.06 -0.54 5.27 16 28 H 0.16 2.26 6.41 -2.91 -0.02 2.24 16 29 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.12 3.80 6.33 -2.91 -0.02 3.78 16 32 H 0.07 2.51 7.42 -2.39 -0.02 2.49 16 33 H 0.04 1.65 2.60 -2.39 -0.01 1.65 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.10 3.41 8.08 -2.39 -0.02 3.39 16 36 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 38 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -70.47 310.83 2.80 -67.68 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.40 Total: 24.91 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.19 Total: -49.57 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.30 Total: -58.81 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -2.79 Total: -29.95 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.70 Total: 45.76 kcal Total: -70.47 2.80 -67.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.380 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds