Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47111 * 2 1 4 4 O 1.42898 * 109.47386 * 120.00167 * 2 1 3 5 5 C 1.50693 * 109.47205 * 240.00292 * 2 1 3 6 6 C 1.38289 * 119.97632 * 280.02127 * 5 2 1 7 7 C 1.38241 * 120.11639 * 179.76588 * 6 5 2 8 8 C 1.38170 * 120.05595 * 0.46691 * 7 6 5 9 9 C 1.38714 * 119.93824 * 359.51328 * 8 7 6 10 10 O 1.35903 * 120.04905 * 180.23166 * 9 8 7 11 11 C 1.42900 * 117.00443 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.47363 * 180.02562 * 11 10 9 13 13 C 1.50702 * 115.54951 * 65.10648 * 12 11 10 14 14 H 1.07999 * 119.99726 * 266.10720 * 13 12 11 15 15 C 1.37876 * 120.00001 * 86.11531 * 13 12 11 16 16 N 1.31513 * 119.99752 * 353.69625 * 15 13 12 17 17 Si 1.86792 * 120.00222 * 173.69851 * 15 13 12 18 18 H 1.48508 * 109.47063 * 89.99682 * 17 15 13 19 19 H 1.48498 * 109.47306 * 209.99890 * 17 15 13 20 20 H 1.48497 * 109.47195 * 329.99948 * 17 15 13 21 21 C 1.53001 * 117.49495 * 279.43973 * 12 11 10 22 22 C 1.53001 * 117.49858 * 210.77999 * 12 11 10 23 23 C 1.38131 * 119.97317 * 100.00102 * 5 2 1 24 24 H 1.08996 * 109.47548 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47038 * 299.99969 * 1 2 3 26 26 H 1.08999 * 109.47312 * 59.99411 * 1 2 3 27 27 H 0.96701 * 114.00028 * 60.00179 * 4 2 1 28 28 H 1.07998 * 119.93760 * 359.97438 * 6 5 2 29 29 H 1.07996 * 119.97126 * 180.23236 * 7 6 5 30 30 H 1.07991 * 120.02646 * 179.78933 * 8 7 6 31 31 H 1.08998 * 109.46769 * 300.00082 * 11 10 9 32 32 H 1.09000 * 109.47125 * 59.99824 * 11 10 9 33 33 H 0.97006 * 120.00194 * 180.02562 * 16 15 13 34 34 H 1.08999 * 117.50302 * 359.97438 * 21 12 11 35 35 H 1.08999 * 117.49653 * 145.02191 * 21 12 11 36 36 H 1.09000 * 117.49625 * 214.97375 * 22 12 11 37 37 H 1.09001 * 117.50007 * 359.97372 * 22 12 11 38 38 H 1.07993 * 120.02594 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7103 -1.2304 6 6 2.0660 -2.0924 -1.2650 7 6 2.5218 -2.7470 -2.3941 8 6 2.9539 -2.0214 -3.4877 9 6 2.9206 -0.6351 -3.4557 10 8 3.3406 0.0808 -4.5318 11 6 3.8036 -0.6596 -5.6630 12 6 4.2316 0.3098 -6.7666 13 6 5.4184 1.1803 -6.4427 14 1 5.2676 2.1689 -6.0351 15 6 6.6966 0.7146 -6.6670 16 7 6.8858 -0.5306 -7.0454 17 14 8.1596 1.8522 -6.4332 18 1 8.6391 1.7602 -5.0307 19 1 9.2510 1.4512 -7.3568 20 1 7.7517 3.2497 -6.7262 21 6 3.1319 0.9121 -7.6433 22 6 4.0698 -0.1536 -8.2157 23 6 2.4582 0.0196 -2.3231 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7210 -1.5952 1.2328 28 1 1.7326 -2.6612 -0.4097 29 1 2.5436 -3.8264 -2.4200 30 1 3.3130 -2.5333 -4.3682 31 1 4.6541 -1.2754 -5.3708 32 1 3.0016 -1.2992 -6.0316 33 1 7.7851 -0.8585 -7.2029 34 1 2.1035 0.6175 -7.4342 35 1 3.2670 1.9379 -7.9862 36 1 4.8216 0.1715 -8.9350 37 1 3.6588 -1.1492 -8.3829 38 1 2.4309 1.0988 -2.2959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = -47.475979 kcal Electronic energy + Delta-G solvation = -19302.289861 eV Core-core repulsion = 16303.576337 eV Total energy + Delta-G solvation = -2998.713525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88418 -38.21520 -36.64681 -35.58152 -31.97778 -31.97206 -30.03137 -28.92286 -26.67882 -25.32181 -23.66798 -22.34311 -21.20716 -20.67744 -19.17491 -17.92210 -16.47041 -16.14575 -15.84184 -15.49521 -15.00815 -14.67115 -14.52229 -14.30532 -13.71323 -13.42155 -13.20947 -12.88375 -12.44368 -12.13755 -11.95053 -11.67622 -11.54750 -11.24863 -10.99912 -10.98145 -10.65666 -10.53292 -10.35742 -10.24314 -10.11639 -9.61649 -8.88459 -8.63704 -8.47788 -8.24395 -7.73456 -6.09208 -4.13445 1.50501 1.74612 3.28783 3.35518 3.39536 3.85107 3.95773 4.37176 4.38964 4.69423 4.93950 5.03382 5.15390 5.21003 5.27276 5.32736 5.46170 5.54652 5.68507 5.76426 5.87514 5.92220 6.01388 6.14772 6.24082 6.26123 6.46616 6.54006 6.63636 6.70065 6.71437 6.75603 6.99073 7.07845 7.32484 7.41121 7.48677 7.85189 8.14078 8.38350 8.88230 9.52518 11.00345 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.004733 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.520867 B = 5913.981187 C = 6300.045985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.145 3.855 3 H 0.108 0.892 4 O -0.558 6.558 5 C -0.083 4.083 6 C -0.170 4.170 7 C -0.076 4.076 8 C -0.214 4.214 9 C 0.153 3.847 10 O -0.294 6.294 11 C 0.105 3.895 12 C 0.039 3.961 13 C -0.487 4.487 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.205 4.205 22 C -0.145 4.145 23 C -0.154 4.154 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.372 0.628 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 -3.615 9.786 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 H 0.125 0.875 4 O -0.363 6.363 5 C -0.083 4.083 6 C -0.188 4.188 7 C -0.094 4.094 8 C -0.233 4.233 9 C 0.106 3.894 10 O -0.206 6.206 11 C 0.030 3.970 12 C 0.038 3.962 13 C -0.525 4.525 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.242 4.242 22 C -0.183 4.183 23 C -0.173 4.173 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.548 -2.950 9.785 14.687 hybrid contribution 0.691 -0.407 -0.266 0.845 sum -9.856 -3.357 9.520 14.108 Atomic orbital electron populations 1.22470 0.95505 1.02761 1.02874 1.20788 0.92899 0.96064 0.81666 0.87454 1.86617 1.77465 1.29043 1.43222 1.20195 0.98561 0.94099 0.95451 1.20531 1.06073 0.93478 0.98713 1.20827 0.96640 0.99347 0.92624 1.21392 1.07393 0.93458 1.01047 1.19220 0.91625 0.90286 0.88306 1.86199 1.75989 1.35913 1.22543 1.22644 0.95923 0.94238 0.84173 1.18730 0.94381 0.96357 0.86689 1.20384 0.88671 1.00484 1.42960 0.91939 1.24988 0.98808 0.94996 0.94562 1.69990 1.21763 1.14207 1.46099 0.86591 0.82129 0.81282 0.78057 1.20569 1.21150 1.19719 1.23007 0.94298 0.98100 1.08840 1.22530 1.01013 0.95973 0.98738 1.20194 1.05023 1.00189 0.91881 0.92180 0.91627 0.91162 0.77985 0.86856 0.86214 0.85324 0.91323 0.95161 0.92958 0.91555 0.90096 0.89449 0.91744 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.51 37.15 0.35 -1.28 16 2 C 0.14 1.65 3.82 -27.89 -0.11 1.54 16 3 H 0.11 1.22 8.00 -51.93 -0.42 0.81 16 4 O -0.56 -6.43 13.19 -35.23 -0.46 -6.90 16 5 C -0.08 -1.14 4.97 -104.65 -0.52 -1.66 16 6 C -0.17 -2.19 9.32 -39.56 -0.37 -2.56 16 7 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 8 C -0.21 -3.65 9.04 -39.43 -0.36 -4.00 16 9 C 0.15 2.91 6.69 -39.22 -0.26 2.64 16 10 O -0.29 -6.54 10.06 -19.44 -0.20 -6.74 16 11 C 0.10 2.38 4.56 37.16 0.17 2.55 16 12 C 0.04 0.96 1.62 -155.66 -0.25 0.71 16 13 C -0.49 -13.36 8.77 -34.44 -0.30 -13.66 16 14 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 15 C 0.07 1.89 5.38 -17.82 -0.10 1.80 16 16 N -0.88 -24.64 12.88 55.43 0.71 -23.93 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 C -0.21 -4.48 9.96 -26.69 -0.27 -4.74 16 22 C -0.15 -3.32 9.37 -26.69 -0.25 -3.57 16 23 C -0.15 -2.54 9.61 -39.43 -0.38 -2.92 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.37 2.98 7.50 45.56 0.34 3.32 16 28 H 0.11 1.09 6.78 -52.49 -0.36 0.74 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 2.18 6.30 -52.49 -0.33 1.85 16 31 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 32 H 0.03 0.62 7.61 -51.93 -0.40 0.22 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.13 1.99 8.03 -52.49 -0.42 1.57 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -29.75 322.73 -8.04 -37.79 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.90 Total: 5.35 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -3.03 Total: -26.63 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.71 Total: -23.93 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.66 Total: -13.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.75 -8.04 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.683 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds