Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47111 * 2 1 4 4 O 1.42898 * 109.47386 * 120.00167 * 2 1 3 5 5 C 1.50693 * 109.47205 * 240.00292 * 2 1 3 6 6 C 1.38289 * 119.97632 * 280.02127 * 5 2 1 7 7 C 1.38241 * 120.11639 * 179.76588 * 6 5 2 8 8 C 1.38170 * 120.05595 * 0.46691 * 7 6 5 9 9 C 1.38714 * 119.93824 * 359.51328 * 8 7 6 10 10 O 1.35903 * 120.04905 * 180.23166 * 9 8 7 11 11 C 1.42900 * 117.00443 * 0.02562 * 10 9 8 12 12 C 1.52995 * 109.47363 * 180.02562 * 11 10 9 13 13 C 1.50702 * 115.54951 * 65.10648 * 12 11 10 14 14 H 1.07999 * 119.99726 * 266.10720 * 13 12 11 15 15 C 1.37876 * 120.00001 * 86.11531 * 13 12 11 16 16 N 1.31513 * 119.99752 * 353.69625 * 15 13 12 17 17 Si 1.86792 * 120.00222 * 173.69851 * 15 13 12 18 18 H 1.48508 * 109.47063 * 89.99682 * 17 15 13 19 19 H 1.48498 * 109.47306 * 209.99890 * 17 15 13 20 20 H 1.48497 * 109.47195 * 329.99948 * 17 15 13 21 21 C 1.53001 * 117.49495 * 279.43973 * 12 11 10 22 22 C 1.53001 * 117.49858 * 210.77999 * 12 11 10 23 23 C 1.38131 * 119.97317 * 100.00102 * 5 2 1 24 24 H 1.08996 * 109.47548 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47038 * 299.99969 * 1 2 3 26 26 H 1.08999 * 109.47312 * 59.99411 * 1 2 3 27 27 H 0.96701 * 114.00028 * 60.00179 * 4 2 1 28 28 H 1.07998 * 119.93760 * 359.97438 * 6 5 2 29 29 H 1.07996 * 119.97126 * 180.23236 * 7 6 5 30 30 H 1.07991 * 120.02646 * 179.78933 * 8 7 6 31 31 H 1.08998 * 109.46769 * 300.00082 * 11 10 9 32 32 H 1.09000 * 109.47125 * 59.99824 * 11 10 9 33 33 H 0.97006 * 120.00194 * 180.02562 * 16 15 13 34 34 H 1.08999 * 117.50302 * 359.97438 * 21 12 11 35 35 H 1.08999 * 117.49653 * 145.02191 * 21 12 11 36 36 H 1.09000 * 117.49625 * 214.97375 * 22 12 11 37 37 H 1.09001 * 117.50007 * 359.97372 * 22 12 11 38 38 H 1.07993 * 120.02594 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7103 -1.2304 6 6 2.0660 -2.0924 -1.2650 7 6 2.5218 -2.7470 -2.3941 8 6 2.9539 -2.0214 -3.4877 9 6 2.9206 -0.6351 -3.4557 10 8 3.3406 0.0808 -4.5318 11 6 3.8036 -0.6596 -5.6630 12 6 4.2316 0.3098 -6.7666 13 6 5.4184 1.1803 -6.4427 14 1 5.2676 2.1689 -6.0351 15 6 6.6966 0.7146 -6.6670 16 7 6.8858 -0.5306 -7.0454 17 14 8.1596 1.8522 -6.4332 18 1 8.6391 1.7602 -5.0307 19 1 9.2510 1.4512 -7.3568 20 1 7.7517 3.2497 -6.7262 21 6 3.1319 0.9121 -7.6433 22 6 4.0698 -0.1536 -8.2157 23 6 2.4582 0.0196 -2.3231 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7210 -1.5952 1.2328 28 1 1.7326 -2.6612 -0.4097 29 1 2.5436 -3.8264 -2.4200 30 1 3.3130 -2.5333 -4.3682 31 1 4.6541 -1.2754 -5.3708 32 1 3.0016 -1.2992 -6.0316 33 1 7.7851 -0.8585 -7.2029 34 1 2.1035 0.6175 -7.4342 35 1 3.2670 1.9379 -7.9862 36 1 4.8216 0.1715 -8.9350 37 1 3.6588 -1.1492 -8.3829 38 1 2.4309 1.0988 -2.2959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = -65.396288 kcal Electronic energy + Delta-G solvation = -19303.066944 eV Core-core repulsion = 16303.576337 eV Total energy + Delta-G solvation = -2999.490608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16849 -39.52511 -38.11022 -36.98600 -34.04202 -32.98632 -31.24068 -29.95126 -28.39883 -27.29650 -24.69618 -23.55448 -22.96810 -21.93687 -20.99723 -19.12792 -18.28315 -17.27722 -17.03095 -16.87158 -16.76396 -16.34333 -15.90827 -15.47653 -15.14570 -14.67416 -14.51360 -14.08187 -13.91122 -13.54622 -13.24077 -13.00823 -12.91691 -12.85061 -12.57642 -12.46175 -12.25885 -12.12244 -11.89974 -11.70171 -11.46086 -11.11373 -10.80750 -10.50484 -10.10407 -9.80741 -9.07505 -8.16790 -6.26547 0.31902 0.52449 1.38093 1.39675 1.49573 2.34781 2.41698 2.77384 3.12584 3.48021 3.55302 3.68301 3.89856 4.10785 4.14901 4.19648 4.26427 4.37977 4.38686 4.42684 4.55163 4.61499 4.66461 4.82019 4.91265 4.94623 5.00456 5.09377 5.16654 5.25777 5.40676 5.47417 5.54736 5.56272 5.58145 5.72288 5.90071 6.34082 6.65831 6.77008 6.81268 7.41457 8.92033 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.004733 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.520867 B = 5913.981187 C = 6300.045985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.148 3.852 3 H 0.102 0.898 4 O -0.569 6.569 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.075 4.075 8 C -0.230 4.230 9 C 0.112 3.888 10 O -0.322 6.322 11 C 0.123 3.877 12 C 0.002 3.998 13 C -0.506 4.506 14 H 0.046 0.954 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.948 3.052 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.184 4.184 22 C -0.141 4.141 23 C -0.169 4.169 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.389 0.611 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.120 0.880 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 -4.490 11.521 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.089 3.911 3 H 0.120 0.880 4 O -0.377 6.377 5 C -0.079 4.079 6 C -0.175 4.175 7 C -0.093 4.093 8 C -0.249 4.249 9 C 0.066 3.934 10 O -0.236 6.236 11 C 0.048 3.952 12 C 0.002 3.998 13 C -0.544 4.544 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.544 5.544 17 Si 0.774 3.226 18 H -0.206 1.206 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.221 4.221 22 C -0.179 4.179 23 C -0.187 4.187 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.239 0.761 28 H 0.175 0.825 29 H 0.170 0.830 30 H 0.138 0.862 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.867 -3.834 11.530 16.984 hybrid contribution 1.026 -0.178 -0.663 1.234 sum -10.841 -4.012 10.867 15.866 Atomic orbital electron populations 1.22410 0.93419 1.03807 1.03302 1.20770 0.94341 0.95503 0.80488 0.88044 1.86607 1.77835 1.30480 1.42766 1.20562 0.97214 0.94810 0.95322 1.21054 1.03740 0.93287 0.99420 1.21222 0.95345 1.00924 0.91774 1.21487 1.08335 0.92890 1.02145 1.19582 0.94126 0.91352 0.88315 1.86117 1.77157 1.36882 1.23417 1.22224 0.95368 0.93401 0.84172 1.18893 0.95143 0.97700 0.88064 1.20590 0.90333 1.00330 1.43116 0.93579 1.25630 1.00989 0.96262 0.94452 1.70073 1.22196 1.15281 1.46818 0.85713 0.79342 0.79707 0.77868 1.20629 1.20300 1.19354 1.23000 0.94796 0.97790 1.06504 1.22455 1.00968 0.97221 0.97227 1.20387 1.05625 1.00516 0.92205 0.90835 0.90397 0.91571 0.76100 0.82546 0.83041 0.86209 0.94294 0.93379 0.92920 0.89177 0.90169 0.91354 0.89952 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.51 71.98 0.68 -1.93 16 2 C 0.15 3.01 3.82 29.84 0.11 3.12 16 3 H 0.10 2.18 8.00 -2.38 -0.02 2.16 16 4 O -0.57 -11.24 13.19 -148.98 -1.96 -13.21 16 5 C -0.08 -2.02 4.97 -19.88 -0.10 -2.12 16 6 C -0.16 -3.51 9.32 22.28 0.21 -3.30 16 7 C -0.07 -1.93 10.04 22.25 0.22 -1.70 16 8 C -0.23 -7.82 9.04 22.37 0.20 -7.62 16 9 C 0.11 4.36 6.69 22.51 0.15 4.51 16 10 O -0.32 -14.91 10.06 -92.46 -0.93 -15.84 16 11 C 0.12 5.77 4.56 71.98 0.33 6.10 16 12 C 0.00 0.12 1.62 -52.93 -0.09 0.04 16 13 C -0.51 -28.59 8.77 25.60 0.22 -28.37 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 15 C 0.03 1.51 5.38 84.65 0.46 1.97 16 16 N -0.91 -51.62 12.88 21.45 0.28 -51.34 16 17 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 C -0.18 -7.98 9.96 30.62 0.30 -7.67 16 22 C -0.14 -6.51 9.37 30.62 0.29 -6.22 16 23 C -0.17 -5.58 9.61 22.37 0.21 -5.37 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.39 4.52 7.50 -74.06 -0.56 3.96 16 28 H 0.16 2.14 6.78 -2.91 -0.02 2.12 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.12 4.18 6.30 -2.92 -0.02 4.16 16 31 H 0.04 2.00 7.66 -2.39 -0.02 1.98 16 32 H 0.05 2.01 7.61 -2.39 -0.02 1.99 16 33 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 34 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.13 4.06 8.03 -2.91 -0.02 4.03 16 Total: -1.00 -65.53 322.73 3.12 -62.42 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.50 Total: 20.24 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 3.21 Total: -48.57 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.28 Total: -51.34 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -2.90 Total: -29.05 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.53 3.12 -62.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.981 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds