Wall clock time and date at job start Mon Mar 30 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46911 * 2 1 4 4 C 1.46499 * 120.00045 * 269.99989 * 3 2 1 5 5 C 1.34769 * 119.99811 * 90.00332 * 3 2 1 6 6 O 1.21590 * 120.00179 * 1.32005 * 5 3 2 7 7 N 1.34776 * 120.00071 * 181.32108 * 5 3 2 8 8 C 1.46504 * 119.99807 * 32.31338 * 7 5 3 9 9 C 1.50701 * 109.46835 * 258.57988 * 8 7 5 10 10 H 1.08003 * 120.00301 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00194 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00511 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46810 * 89.99761 * 13 11 9 15 15 H 1.48494 * 109.47287 * 210.00178 * 13 11 9 16 16 H 1.48505 * 109.47083 * 330.00158 * 13 11 9 17 17 C 1.39946 * 120.00198 * 212.31147 * 7 5 3 18 18 C 1.38865 * 120.07012 * 6.44311 * 17 7 5 19 19 C 1.38112 * 119.92912 * 179.97438 * 18 17 7 20 20 C 1.38275 * 120.07051 * 359.97438 * 19 18 17 21 21 C 1.38277 * 120.14265 * 0.04435 * 20 19 18 22 22 C 1.38117 * 120.06836 * 359.95696 * 21 20 19 23 23 H 1.08997 * 109.47291 * 299.99988 * 1 2 3 24 24 H 1.08996 * 109.46888 * 60.00039 * 1 2 3 25 25 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47228 * 240.00581 * 2 1 3 27 27 H 1.08994 * 109.47593 * 119.99738 * 2 1 3 28 28 H 1.09001 * 109.47187 * 233.42074 * 4 3 2 29 29 H 1.09000 * 109.47168 * 353.41743 * 4 3 2 30 30 H 1.08994 * 109.47223 * 113.41321 * 4 3 2 31 31 H 1.09000 * 109.47236 * 18.57916 * 8 7 5 32 32 H 1.09001 * 109.47258 * 138.58222 * 8 7 5 33 33 H 0.96996 * 119.99843 * 179.97438 * 12 11 9 34 34 H 1.08005 * 120.03414 * 359.70276 * 18 17 7 35 35 H 1.08000 * 119.96478 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.93105 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.96629 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.03557 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.0633 1.4355 2.2200 7 7 2.6667 3.2960 1.1674 8 6 2.2415 4.2086 0.1031 9 6 3.3541 4.3615 -0.9018 10 1 4.2850 3.8322 -0.7615 11 6 3.1840 5.1779 -1.9997 12 7 2.0506 5.8229 -2.1703 13 14 4.5634 5.3680 -3.2450 14 1 4.4216 4.3347 -4.3022 15 1 4.4929 6.7180 -3.8596 16 1 5.8722 5.2023 -2.5631 17 6 3.5128 3.7527 2.1842 18 6 4.0243 2.8603 3.1171 19 6 4.8595 3.3141 4.1191 20 6 5.1870 4.6555 4.1936 21 6 4.6791 5.5468 3.2664 22 6 3.8433 5.0992 2.2620 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5137 0.8899 28 1 3.2778 2.4682 -1.2772 29 1 2.1394 1.3704 -2.0938 30 1 1.5518 2.8909 -1.3792 31 1 1.3584 3.8039 -0.3913 32 1 2.0035 5.1818 0.5325 33 1 1.9311 6.3976 -2.9425 34 1 3.7656 1.8131 3.0618 35 1 5.2572 2.6206 4.8452 36 1 5.8407 5.0079 4.9778 37 1 4.9364 6.5939 3.3275 38 1 3.4472 5.7958 1.5378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091973260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:34 Heat of formation + Delta-G solvation = 33.240355 kcal Electronic energy + Delta-G solvation = -20520.550590 eV Core-core repulsion = 17557.629939 eV Total energy + Delta-G solvation = -2962.920651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37023 -38.10704 -35.55635 -35.24162 -32.77444 -30.83626 -30.26843 -28.83938 -27.86149 -25.23763 -23.63692 -23.24020 -21.80739 -20.88582 -18.89516 -17.29005 -16.68522 -16.40814 -15.85531 -15.02522 -14.72533 -14.32654 -14.30414 -13.55579 -13.35792 -13.27563 -12.85274 -12.72484 -12.36437 -12.25586 -12.14514 -11.77606 -11.56888 -11.23190 -11.01955 -11.00331 -10.75412 -10.52267 -10.26707 -10.11059 -9.77399 -9.24877 -9.17985 -8.68141 -8.27463 -7.98397 -6.95833 -6.28341 -4.32268 2.06704 2.07868 3.14686 3.22293 3.24501 3.29650 3.60855 4.20389 4.46984 4.60019 5.01333 5.27564 5.51479 5.53780 5.54940 5.62840 5.77942 5.90286 5.97636 6.10951 6.13019 6.22789 6.27080 6.41549 6.49078 6.60711 6.80786 6.93820 6.95118 7.12819 7.14463 7.20615 7.25927 7.45549 7.58567 7.63073 7.85137 7.96625 8.45503 8.67995 9.09856 9.27655 10.75778 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.010396 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.112362 B = 2692.713226 C = 4465.040105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.126 3.874 3 N -0.621 5.621 4 C 0.052 3.948 5 C 0.712 3.288 6 O -0.591 6.591 7 N -0.568 5.568 8 C 0.223 3.777 9 C -0.530 4.530 10 H 0.067 0.933 11 C 0.066 3.934 12 N -0.886 5.886 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.210 3.790 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.173 4.173 21 C -0.096 4.096 22 C -0.152 4.152 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -5.400 3.413 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 N -0.357 5.357 4 C -0.089 4.089 5 C 0.416 3.584 6 O -0.470 6.470 7 N -0.290 5.290 8 C 0.104 3.896 9 C -0.569 4.569 10 H 0.085 0.915 11 C -0.138 4.138 12 N -0.524 5.524 13 Si 0.721 3.279 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.112 3.888 18 C -0.192 4.192 19 C -0.118 4.118 20 C -0.192 4.192 21 C -0.115 4.115 22 C -0.173 4.173 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.042 -5.631 3.707 6.822 hybrid contribution 0.607 0.304 -1.035 1.238 sum 1.649 -5.327 2.672 6.184 Atomic orbital electron populations 1.22162 0.96618 1.01432 1.02397 1.21281 0.93903 0.82179 1.02382 1.47397 1.68429 1.13550 1.06283 1.23327 1.07137 0.96296 0.82097 1.15884 0.77657 0.81151 0.83663 1.90766 1.57861 1.67870 1.30539 1.45079 1.47935 1.09408 1.26614 1.20057 0.96498 0.88962 0.84077 1.21338 1.00779 1.27917 1.06840 0.91535 1.24883 0.95848 0.95073 0.97968 1.69910 1.24132 1.28883 1.29438 0.86546 0.82411 0.77736 0.81256 1.20372 1.20991 1.19642 1.17694 0.90194 0.92768 0.88096 1.21351 1.00457 1.00827 0.96533 1.20820 0.97724 0.95436 0.97814 1.20857 1.03722 0.93810 1.00856 1.20836 0.97119 0.99003 0.94557 1.20950 1.01794 0.94152 1.00439 0.92376 0.92600 0.92195 0.90974 0.90398 0.87238 0.93781 0.89438 0.92597 0.94117 0.92292 0.84368 0.86948 0.87225 0.86614 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.13 1.94 6.13 -4.04 -0.02 1.91 16 3 N -0.62 -11.79 2.86 -187.35 -0.54 -12.32 16 4 C 0.05 0.99 8.34 59.85 0.50 1.49 16 5 C 0.71 15.49 7.31 -86.93 -0.64 14.86 16 6 O -0.59 -13.60 13.55 5.29 0.07 -13.53 16 7 N -0.57 -12.64 2.64 -120.10 -0.32 -12.96 16 8 C 0.22 5.15 3.98 -5.19 -0.02 5.13 16 9 C -0.53 -12.64 5.33 -34.44 -0.18 -12.82 16 10 H 0.07 1.65 7.15 -52.48 -0.38 1.27 16 11 C 0.07 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -22.73 13.29 55.43 0.74 -22.00 16 13 Si 0.89 19.33 29.54 -169.99 -5.02 14.30 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 C 0.21 4.53 6.34 -83.69 -0.53 4.00 16 18 C -0.17 -3.45 8.86 -39.40 -0.35 -3.79 16 19 C -0.10 -1.71 10.04 -39.61 -0.40 -2.10 16 20 C -0.17 -2.80 10.04 -39.55 -0.40 -3.20 16 21 C -0.10 -1.66 10.04 -39.61 -0.40 -2.06 16 22 C -0.15 -3.07 9.10 -39.39 -0.36 -3.43 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.08 1.23 7.40 -51.93 -0.38 0.85 16 28 H 0.11 2.31 4.75 -51.93 -0.25 2.06 16 29 H 0.04 0.71 7.76 -51.93 -0.40 0.31 16 30 H 0.09 1.86 4.79 -51.93 -0.25 1.61 16 31 H 0.06 1.34 5.08 -51.93 -0.26 1.08 16 32 H 0.04 1.01 6.61 -51.93 -0.34 0.66 16 33 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.14 2.94 5.57 -52.48 -0.29 2.64 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.14 2.87 6.21 -52.48 -0.33 2.54 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -26.91 304.48 -7.95 -34.87 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.96 Total: 7.51 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.51 Total: -0.46 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.12 Total: -47.28 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.07 Total: -13.53 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.91 -7.95 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.106 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds