Wall clock time and date at job start Mon Mar 30 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.46911 * 2 1 4 4 C 1.46499 * 120.00045 * 269.99989 * 3 2 1 5 5 C 1.34769 * 119.99811 * 90.00332 * 3 2 1 6 6 O 1.21590 * 120.00179 * 1.32005 * 5 3 2 7 7 N 1.34776 * 120.00071 * 181.32108 * 5 3 2 8 8 C 1.46504 * 119.99807 * 32.31338 * 7 5 3 9 9 C 1.50701 * 109.46835 * 258.57988 * 8 7 5 10 10 H 1.08003 * 120.00301 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00194 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00511 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46810 * 89.99761 * 13 11 9 15 15 H 1.48494 * 109.47287 * 210.00178 * 13 11 9 16 16 H 1.48505 * 109.47083 * 330.00158 * 13 11 9 17 17 C 1.39946 * 120.00198 * 212.31147 * 7 5 3 18 18 C 1.38865 * 120.07012 * 6.44311 * 17 7 5 19 19 C 1.38112 * 119.92912 * 179.97438 * 18 17 7 20 20 C 1.38275 * 120.07051 * 359.97438 * 19 18 17 21 21 C 1.38277 * 120.14265 * 0.04435 * 20 19 18 22 22 C 1.38117 * 120.06836 * 359.95696 * 21 20 19 23 23 H 1.08997 * 109.47291 * 299.99988 * 1 2 3 24 24 H 1.08996 * 109.46888 * 60.00039 * 1 2 3 25 25 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47228 * 240.00581 * 2 1 3 27 27 H 1.08994 * 109.47593 * 119.99738 * 2 1 3 28 28 H 1.09001 * 109.47187 * 233.42074 * 4 3 2 29 29 H 1.09000 * 109.47168 * 353.41743 * 4 3 2 30 30 H 1.08994 * 109.47223 * 113.41321 * 4 3 2 31 31 H 1.09000 * 109.47236 * 18.57916 * 8 7 5 32 32 H 1.09001 * 109.47258 * 138.58222 * 8 7 5 33 33 H 0.96996 * 119.99843 * 179.97438 * 12 11 9 34 34 H 1.08005 * 120.03414 * 359.70276 * 18 17 7 35 35 H 1.08000 * 119.96478 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.93105 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.96629 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.03557 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.0633 1.4355 2.2200 7 7 2.6667 3.2960 1.1674 8 6 2.2415 4.2086 0.1031 9 6 3.3541 4.3615 -0.9018 10 1 4.2850 3.8322 -0.7615 11 6 3.1840 5.1779 -1.9997 12 7 2.0506 5.8229 -2.1703 13 14 4.5634 5.3680 -3.2450 14 1 4.4216 4.3347 -4.3022 15 1 4.4929 6.7180 -3.8596 16 1 5.8722 5.2023 -2.5631 17 6 3.5128 3.7527 2.1842 18 6 4.0243 2.8603 3.1171 19 6 4.8595 3.3141 4.1191 20 6 5.1870 4.6555 4.1936 21 6 4.6791 5.5468 3.2664 22 6 3.8433 5.0992 2.2620 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5137 0.8899 28 1 3.2778 2.4682 -1.2772 29 1 2.1394 1.3704 -2.0938 30 1 1.5518 2.8909 -1.3792 31 1 1.3584 3.8039 -0.3913 32 1 2.0035 5.1818 0.5325 33 1 1.9311 6.3976 -2.9425 34 1 3.7656 1.8131 3.0618 35 1 5.2572 2.6206 4.8452 36 1 5.8407 5.0079 4.9778 37 1 4.9364 6.5939 3.3275 38 1 3.4472 5.7958 1.5378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091973260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:33 Heat of formation + Delta-G solvation = 19.800932 kcal Electronic energy + Delta-G solvation = -20521.133367 eV Core-core repulsion = 17557.629939 eV Total energy + Delta-G solvation = -2963.503428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99594 -39.58338 -37.28734 -36.72237 -34.62052 -32.18946 -31.74085 -30.38188 -29.58336 -26.82570 -25.33611 -24.74492 -23.25095 -22.36802 -20.44605 -19.06942 -18.34746 -18.05799 -17.38804 -16.68364 -16.28442 -15.95762 -15.75147 -15.04076 -14.83381 -14.71061 -14.49525 -14.28142 -14.01063 -13.81952 -13.50253 -13.33002 -12.95101 -12.85360 -12.67429 -12.47785 -12.15240 -12.05282 -11.85639 -11.83663 -11.48478 -10.91257 -10.85239 -10.57330 -9.73469 -9.55527 -8.58588 -8.14832 -6.26456 0.59479 0.61320 1.42618 1.47122 1.54951 1.70752 1.96425 2.40307 2.86849 3.10791 3.11092 4.00800 4.15630 4.22140 4.32281 4.39075 4.44932 4.53685 4.61727 4.68930 4.71428 4.81823 4.88669 4.94179 5.02061 5.21054 5.23781 5.27531 5.42267 5.47250 5.65635 5.67808 5.72087 5.77205 5.94587 5.98762 6.04222 6.39059 6.65581 6.88803 7.33716 7.46443 8.86445 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.010396 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.112362 B = 2692.713226 C = 4465.040105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.618 5.618 4 C 0.064 3.936 5 C 0.703 3.297 6 O -0.610 6.610 7 N -0.577 5.577 8 C 0.241 3.759 9 C -0.519 4.519 10 H 0.056 0.944 11 C 0.030 3.970 12 N -0.916 5.916 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.177 3.823 18 C -0.188 4.188 19 C -0.094 4.094 20 C -0.159 4.159 21 C -0.093 4.093 22 C -0.172 4.172 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -6.043 3.720 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.003 4.003 3 N -0.354 5.354 4 C -0.077 4.077 5 C 0.407 3.593 6 O -0.492 6.492 7 N -0.300 5.300 8 C 0.121 3.879 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.171 4.171 12 N -0.554 5.554 13 Si 0.776 3.224 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.080 3.920 18 C -0.209 4.209 19 C -0.113 4.113 20 C -0.178 4.178 21 C -0.111 4.111 22 C -0.194 4.194 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.508 -6.296 4.014 7.877 hybrid contribution 0.178 0.491 -1.022 1.148 sum 2.687 -5.804 2.992 7.062 Atomic orbital electron populations 1.22093 0.95467 1.03164 1.01053 1.21595 0.94840 0.80192 1.03665 1.47553 1.67766 1.14709 1.05323 1.23001 1.04939 0.96601 0.83133 1.16103 0.77820 0.81106 0.84301 1.90732 1.58911 1.68200 1.31338 1.45071 1.48538 1.09590 1.26804 1.19714 0.96096 0.87991 0.84051 1.21259 1.00181 1.27431 1.06848 0.92635 1.25461 0.97519 0.94782 0.99366 1.70004 1.25675 1.29681 1.30086 0.85662 0.79699 0.77667 0.79396 1.19252 1.21140 1.20019 1.18045 0.91353 0.93747 0.88871 1.21363 1.01909 0.99949 0.97674 1.21222 0.96215 0.96778 0.97044 1.21320 1.02755 0.92937 1.00808 1.21216 0.95620 1.00862 0.93420 1.20957 1.03430 0.93408 1.01575 0.95092 0.92482 0.88904 0.87672 0.91061 0.89322 0.90384 0.91873 0.93606 0.96583 0.92248 0.85969 0.83710 0.82949 0.83676 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.24 71.98 0.74 -3.53 16 2 C 0.12 3.52 6.13 86.38 0.53 4.05 16 3 N -0.62 -23.64 2.86 -864.91 -2.47 -26.11 16 4 C 0.06 2.45 8.34 127.77 1.07 3.52 16 5 C 0.70 31.57 7.31 179.06 1.31 32.88 16 6 O -0.61 -29.00 13.55 -4.00 -0.05 -29.06 16 7 N -0.58 -26.82 2.64 -652.15 -1.72 -28.55 16 8 C 0.24 11.73 3.98 85.63 0.34 12.07 16 9 C -0.52 -25.45 5.33 25.60 0.14 -25.31 16 10 H 0.06 2.83 7.15 -2.91 -0.02 2.81 16 11 C 0.03 1.46 5.46 84.65 0.46 1.93 16 12 N -0.92 -47.95 13.29 21.45 0.28 -47.67 16 13 Si 0.95 39.68 29.54 68.60 2.03 41.71 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 C 0.18 7.83 6.34 38.15 0.24 8.07 16 18 C -0.19 -7.62 8.86 22.39 0.20 -7.42 16 19 C -0.09 -3.02 10.04 22.25 0.22 -2.80 16 20 C -0.16 -4.60 10.04 22.29 0.22 -4.38 16 21 C -0.09 -3.03 10.04 22.25 0.22 -2.80 16 22 C -0.17 -7.09 9.10 22.39 0.20 -6.89 16 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 26 H 0.11 2.41 7.87 -2.38 -0.02 2.39 16 27 H 0.07 2.21 7.40 -2.39 -0.02 2.20 16 28 H 0.09 3.78 4.75 -2.39 -0.01 3.77 16 29 H 0.08 2.41 7.76 -2.39 -0.02 2.39 16 30 H 0.06 2.75 4.79 -2.39 -0.01 2.74 16 31 H 0.05 2.33 5.08 -2.39 -0.01 2.32 16 32 H 0.02 0.86 6.61 -2.39 -0.02 0.84 16 33 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.12 5.32 5.57 -2.91 -0.02 5.30 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.11 5.10 6.21 -2.91 -0.02 5.08 16 Total: -1.00 -60.05 304.48 5.01 -55.04 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 1.06 Total: 25.26 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.89 Total: 9.37 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.91 Total: -102.33 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -60.05 5.01 -55.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -60.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds