Wall clock time and date at job start Mon Mar 30 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47149 * 270.00619 * 3 2 1 5 5 H 1.48499 * 109.47097 * 30.00014 * 3 2 1 6 6 H 1.48493 * 109.46918 * 150.00220 * 3 2 1 7 7 C 1.37876 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47222 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47105 * 180.02562 * 10 9 7 12 12 C 1.35911 * 116.99858 * 180.02562 * 11 10 9 13 13 C 1.39136 * 120.47231 * 179.97438 * 12 11 10 14 14 C 1.38545 * 118.37332 * 179.69707 * 13 12 11 15 15 C 1.38251 * 119.21857 * 0.27640 * 14 13 12 16 16 C 1.50702 * 119.55473 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47133 * 95.00106 * 16 15 14 18 18 C 1.46897 * 111.00328 * 180.02562 * 17 16 15 19 19 C 1.52990 * 117.50096 * 223.74659 * 18 17 16 20 20 C 1.52998 * 117.50023 * 155.08228 * 18 17 16 21 21 N 1.31842 * 120.88969 * 359.97438 * 15 14 13 22 22 C 1.31846 * 121.78127 * 359.97438 * 21 15 14 23 23 H 0.96996 * 120.00186 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47083 * 60.00156 * 9 7 2 25 25 H 1.09000 * 109.47558 * 300.00445 * 9 7 2 26 26 H 1.08998 * 109.47020 * 60.00296 * 10 9 7 27 27 H 1.09000 * 109.47381 * 300.00189 * 10 9 7 28 28 H 1.08002 * 120.81609 * 359.97438 * 13 12 11 29 29 H 1.07999 * 120.38409 * 180.29621 * 14 13 12 30 30 H 1.08995 * 109.47660 * 214.99853 * 16 15 14 31 31 H 1.09006 * 109.47102 * 335.00209 * 16 15 14 32 32 H 1.00901 * 111.00086 * 56.04315 * 17 16 15 33 33 H 1.09004 * 115.54833 * 9.42287 * 18 17 16 34 34 H 1.08998 * 117.50532 * 359.97438 * 19 18 17 35 35 H 1.08999 * 117.50141 * 145.01942 * 19 18 17 36 36 H 1.08999 * 117.50312 * 214.97896 * 20 18 17 37 37 H 1.08996 * 117.50265 * 359.97438 * 20 18 17 38 38 H 1.07995 * 119.65565 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2710 -6.0395 -0.0007 13 6 1.6496 -7.2844 -0.0007 14 6 2.4462 -8.4179 -0.0066 15 6 3.8214 -8.2762 -0.0065 16 6 4.6952 -9.5041 -0.0124 17 7 5.0769 -9.8268 -1.3937 18 6 5.9306 -11.0215 -1.4386 19 6 7.1571 -10.9793 -2.3521 20 6 5.9449 -11.8312 -2.7367 21 7 4.3788 -7.0814 -0.0014 22 6 3.6567 -5.9783 0.0034 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6044 -0.8905 28 1 0.5726 -7.3651 -0.0006 29 1 1.9981 -9.4005 -0.0116 30 1 5.5920 -9.3148 0.5775 31 1 4.1471 -10.3421 0.4183 32 1 5.5299 -9.0415 -1.8366 33 1 6.0194 -11.5712 -0.5016 34 1 7.3306 -10.0654 -2.9201 35 1 8.0530 -11.5016 -2.0162 36 1 6.0437 -12.9135 -2.6538 37 1 5.3206 -11.4777 -3.5573 38 1 4.1493 -5.0172 0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094210974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:53 Heat of formation + Delta-G solvation = -6.872513 kcal Electronic energy + Delta-G solvation = -18240.216703 eV Core-core repulsion = 15275.556628 eV Total energy + Delta-G solvation = -2964.660075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65500 -39.49646 -38.54813 -35.56312 -34.71201 -33.48833 -32.24394 -30.81092 -27.22104 -26.36522 -24.77130 -23.20926 -22.80366 -22.62157 -22.09007 -19.44801 -18.21817 -17.82361 -17.31675 -17.12424 -16.90569 -16.52516 -15.93528 -15.48222 -15.09055 -14.72448 -14.58886 -14.32749 -14.03528 -13.91524 -13.44711 -13.37572 -13.03554 -12.76131 -12.71883 -12.51463 -12.34283 -11.83056 -11.76920 -11.67900 -11.44966 -11.23571 -10.68946 -10.59937 -10.46959 -9.43687 -9.15664 -8.27520 -6.40895 0.10820 0.24980 1.41078 1.42826 1.53974 2.17473 2.45169 2.61547 2.95371 3.07258 3.17778 3.46825 3.69394 3.75460 3.98594 4.04315 4.10719 4.22077 4.23596 4.27686 4.36827 4.56903 4.62894 4.66652 4.74244 4.82706 4.83503 5.00092 5.09181 5.15753 5.30536 5.30678 5.45654 5.53951 5.70653 6.04797 6.06071 6.25350 6.34201 6.73838 6.92552 7.29289 8.85475 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.002895 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.812588 B = 9668.350666 C =10152.269641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.080 3.920 11 O -0.329 6.329 12 C 0.068 3.932 13 C -0.121 4.121 14 C -0.100 4.100 15 C 0.072 3.928 16 C 0.126 3.874 17 N -0.662 5.662 18 C 0.015 3.985 19 C -0.207 4.207 20 C -0.171 4.171 21 N -0.462 5.462 22 C 0.003 3.997 23 H 0.267 0.733 24 H 0.000 1.000 25 H 0.001 0.999 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.341 0.659 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 -22.992 -1.212 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.006 3.994 11 O -0.242 6.242 12 C 0.020 3.980 13 C -0.147 4.147 14 C -0.120 4.120 15 C -0.068 4.068 16 C -0.003 4.003 17 N -0.292 5.292 18 C -0.095 4.095 19 C -0.245 4.245 20 C -0.209 4.209 21 N -0.172 5.172 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.173 0.827 29 H 0.192 0.808 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.976 -23.097 -1.320 25.606 hybrid contribution 0.026 1.711 0.197 1.723 sum 11.001 -21.385 -1.123 24.075 Atomic orbital electron populations 1.70111 1.07986 1.28233 1.50612 1.26017 0.95815 1.03620 0.94188 0.85306 0.78591 0.77670 0.78642 1.19595 1.20672 1.18381 1.21395 0.93857 0.91017 1.52121 0.91107 1.18960 0.94514 0.91166 0.96215 1.22961 0.95604 0.80017 1.00860 1.86118 1.36840 1.13441 1.87808 1.20510 0.92111 0.88210 0.97202 1.21299 1.02353 0.89068 1.01998 1.22094 0.93296 0.99777 0.96840 1.21386 0.92854 0.92678 0.99857 1.20742 0.97069 0.92703 0.89792 1.60289 1.45206 1.07006 1.16737 1.22537 0.95869 0.95094 0.96023 1.23477 0.93466 1.02953 1.04634 1.23172 1.00402 0.98616 0.98729 1.67302 1.40921 0.98505 1.10505 1.22930 0.89882 0.98236 1.04361 0.92431 0.98142 0.98085 0.91795 0.91878 0.82656 0.80752 0.93329 0.87047 0.83973 0.85754 0.89386 0.87510 0.87230 0.89456 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -30.49 9.11 25.60 0.23 -30.25 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.08 3.39 4.69 71.98 0.34 3.73 16 11 O -0.33 -13.40 10.15 -92.55 -0.94 -14.34 16 12 C 0.07 2.30 6.71 22.60 0.15 2.45 16 13 C -0.12 -3.29 10.13 22.56 0.23 -3.06 16 14 C -0.10 -2.20 9.71 22.35 0.22 -1.98 16 15 C 0.07 1.72 6.29 42.56 0.27 1.99 16 16 C 0.13 2.21 5.84 85.56 0.50 2.71 16 17 N -0.66 -11.91 6.77 -495.59 -3.35 -15.27 16 18 C 0.01 0.21 6.31 44.91 0.28 0.49 16 19 C -0.21 -2.69 10.23 30.62 0.31 -2.37 16 20 C -0.17 -2.23 10.46 30.62 0.32 -1.91 16 21 N -0.46 -13.65 10.27 -183.49 -1.88 -15.54 16 22 C 0.00 0.10 10.22 84.80 0.87 0.97 16 23 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 27 H 0.06 2.53 7.69 -2.39 -0.02 2.51 16 28 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 1.42 8.04 -2.38 -0.02 1.40 16 32 H 0.34 6.96 8.51 -89.69 -0.76 6.19 16 33 H 0.12 1.37 7.90 -2.39 -0.02 1.35 16 34 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.16 5.00 6.32 -2.91 -0.02 4.98 16 Total: -1.00 -65.46 327.07 0.76 -64.70 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.29 Total: 15.95 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.34 Total: -24.95 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -4.95 Total: -86.69 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.94 Total: -14.34 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.46 0.76 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094210974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.827 kcal (2) G-P(sol) polarization free energy of solvation -65.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds