Wall clock time and date at job start Mon Mar 30 2020 07:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 C 1.52992 * 109.47299 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47414 * 60.00073 * 4 3 2 6 6 C 1.53003 * 109.47163 * 300.00044 * 5 4 3 7 7 C 1.50696 * 109.47504 * 179.97438 * 6 5 4 8 8 O 1.21434 * 120.00071 * 239.99888 * 7 6 5 9 9 C 1.41026 * 119.99969 * 60.00237 * 7 6 5 10 10 H 1.08005 * 119.99925 * 6.38305 * 9 7 6 11 11 C 1.40461 * 120.00388 * 186.38187 * 9 7 6 12 12 N 1.30518 * 120.00199 * 184.87325 * 11 9 7 13 13 Si 1.86799 * 119.99787 * 4.88040 * 11 9 7 14 14 H 1.48500 * 109.47326 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47059 * 300.00150 * 13 11 9 16 16 H 1.48506 * 109.47100 * 59.99697 * 13 11 9 17 17 C 1.53001 * 109.46808 * 240.00207 * 2 1 3 18 18 C 1.52999 * 109.47259 * 300.00286 * 6 5 4 19 19 C 1.53001 * 109.47456 * 59.99493 * 18 6 5 20 20 C 1.52997 * 109.47326 * 180.02562 * 19 18 6 21 21 C 1.53002 * 109.46964 * 300.00310 * 19 18 6 22 22 C 1.52991 * 109.47102 * 60.00014 * 19 18 6 23 23 H 1.08989 * 109.47329 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47176 * 300.00076 * 1 2 3 25 25 H 1.09002 * 109.46917 * 59.99389 * 1 2 3 26 26 H 1.09000 * 109.46842 * 300.00290 * 3 2 1 27 27 H 1.08998 * 109.47123 * 60.00065 * 3 2 1 28 28 H 1.09003 * 109.47375 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47513 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47161 * 59.99717 * 5 4 3 31 31 H 0.96994 * 120.00229 * 354.91939 * 12 11 9 32 32 H 1.08994 * 109.47200 * 60.00167 * 17 2 1 33 33 H 1.08998 * 109.46758 * 299.99697 * 17 2 1 34 34 H 1.08999 * 109.47654 * 180.02562 * 18 6 5 35 35 H 1.09007 * 109.46809 * 299.99908 * 18 6 5 36 36 H 1.09003 * 109.46760 * 299.99671 * 20 19 18 37 37 H 1.09001 * 109.47188 * 59.99781 * 20 19 18 38 38 H 1.08998 * 109.47053 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47123 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47284 * 300.00056 * 21 19 18 41 41 H 1.08998 * 109.47262 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.47045 * 60.00291 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 3.5695 -0.7211 -1.2502 7 6 4.0708 -1.4312 -2.4812 8 8 3.2810 -1.8925 -3.2801 9 6 5.4571 -1.5600 -2.7055 10 1 6.1585 -1.2427 -1.9480 11 6 5.9258 -2.1011 -3.9141 12 7 7.2031 -2.3087 -4.0843 13 14 4.7210 -2.5232 -5.2778 14 1 5.4625 -3.0745 -6.4403 15 1 3.7499 -3.5330 -4.7853 16 1 3.9928 -1.2971 -5.6920 17 6 2.0399 -0.7212 -1.2493 18 6 4.0799 -1.4426 -0.0013 19 6 3.5704 -0.7215 1.2483 20 6 4.0814 -1.4426 2.4972 21 6 4.0805 0.7210 1.2483 22 6 2.0405 -0.7214 1.2489 23 1 -0.3633 -1.0275 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.9334 2.4701 -0.0002 29 1 5.1695 0.7210 -1.2504 30 1 3.7158 1.2354 -2.1399 31 1 7.8355 -2.0220 -3.4071 32 1 1.6766 -0.2074 -2.1392 33 1 1.6766 -1.7489 -1.2492 34 1 3.7170 -2.4704 -0.0015 35 1 5.1700 -1.4425 -0.0017 36 1 3.7182 -2.4704 2.4974 37 1 5.1714 -1.4423 2.4966 38 1 3.7188 -0.9286 3.3874 39 1 3.7172 1.2348 2.1383 40 1 5.1705 0.7210 1.2478 41 1 1.6776 -0.2081 2.1393 42 1 1.6771 -1.7490 1.2489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094543998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:05 Heat of formation + Delta-G solvation = -102.772677 kcal Electronic energy + Delta-G solvation = -21814.046809 eV Core-core repulsion = 18948.768534 eV Total energy + Delta-G solvation = -2865.278275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39401 -37.20238 -34.41383 -33.27816 -33.05634 -32.03457 -27.12183 -26.58748 -26.19176 -25.55894 -25.27589 -22.19702 -20.66775 -19.46319 -18.81020 -17.06019 -16.89511 -14.66251 -14.35053 -14.16026 -14.11065 -14.01081 -13.81048 -13.75466 -13.60563 -12.98097 -12.71352 -12.30575 -12.15205 -11.85381 -11.70457 -11.67667 -11.52512 -11.48793 -11.34214 -10.49013 -10.43234 -10.37275 -10.27677 -10.22143 -10.15410 -10.03246 -9.61109 -9.39548 -9.21557 -9.05151 -9.03048 -7.65261 -6.86638 -5.14297 3.40909 3.65121 4.03815 4.11980 4.48811 4.80588 4.84723 4.85370 5.19473 5.25835 5.41972 5.48330 5.49251 5.60504 5.63636 5.78263 5.79240 5.85546 5.87883 5.95513 6.00704 6.02615 6.03772 6.12051 6.14965 6.16395 6.25545 6.30804 6.33704 6.39191 6.52274 6.53867 6.60806 6.67712 6.72222 6.73996 6.91159 6.99571 7.12521 7.14727 7.61484 7.91571 8.41180 8.68938 9.95459 10.13611 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.007915 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.275324 B = 3536.875452 C = 3947.085445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.097 4.097 4 C -0.088 4.088 5 C -0.087 4.087 6 C -0.082 4.082 7 C 0.365 3.635 8 O -0.587 6.587 9 C -0.573 4.573 10 H 0.072 0.928 11 C 0.054 3.946 12 N -0.809 5.809 13 Si 1.132 2.868 14 H -0.326 1.326 15 H -0.280 1.280 16 H -0.289 1.289 17 C -0.078 4.078 18 C -0.080 4.080 19 C -0.062 4.062 20 C -0.139 4.139 21 C -0.097 4.097 22 C -0.090 4.090 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.281 0.719 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 6.058 11.471 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.125 4.125 6 C -0.083 4.083 7 C 0.269 3.731 8 O -0.487 6.487 9 C -0.604 4.604 10 H 0.090 0.910 11 C -0.167 4.167 12 N -0.435 5.435 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.207 1.207 16 H -0.217 1.217 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.062 4.062 20 C -0.196 4.196 21 C -0.134 4.134 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.622 5.234 9.750 13.437 hybrid contribution 0.464 0.836 1.871 2.101 sum -7.158 6.070 11.621 14.938 Atomic orbital electron populations 1.21825 0.95239 1.01429 1.01012 1.20557 0.94310 0.95338 0.96133 1.21530 0.95279 0.95844 1.00834 1.21109 0.95315 0.98448 0.95726 1.21386 1.00578 0.94405 0.96127 1.20803 0.94850 0.95655 0.97012 1.19671 0.89767 0.78881 0.84819 1.89874 1.58744 1.52611 1.47438 1.21869 0.94539 1.40098 1.03866 0.91010 1.27610 0.98598 0.89361 1.01122 1.70565 1.03185 1.32301 1.37485 0.82270 0.71595 0.78412 0.71201 1.25839 1.20749 1.21694 1.21302 0.94819 0.99938 0.95505 1.21406 1.00437 0.97994 0.91920 1.20531 0.95106 0.95223 0.95312 1.21835 1.00880 1.00029 0.96847 1.21521 1.00020 0.94866 0.97008 1.21543 0.94607 0.99905 0.96693 0.92861 0.93311 0.92841 0.92329 0.92798 0.91882 0.91598 0.92571 0.90829 0.92200 0.92195 0.92621 0.91722 0.92868 0.92807 0.93228 0.92782 0.92247 0.92790 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.48 37.16 0.31 -1.47 16 2 C -0.06 -0.95 0.77 -154.51 -0.12 -1.07 16 3 C -0.10 -1.38 4.47 -26.73 -0.12 -1.50 16 4 C -0.09 -1.32 3.19 -90.62 -0.29 -1.61 16 5 C -0.09 -1.64 4.29 -26.73 -0.11 -1.75 16 6 C -0.08 -1.70 0.60 -155.68 -0.09 -1.79 16 7 C 0.37 9.49 5.62 -33.25 -0.19 9.30 16 8 O -0.59 -16.66 11.53 5.42 0.06 -16.60 16 9 C -0.57 -15.66 8.63 -37.69 -0.33 -15.99 16 10 H 0.07 1.94 7.21 -52.48 -0.38 1.56 16 11 C 0.05 1.52 5.53 -17.27 -0.10 1.42 16 12 N -0.81 -22.72 13.64 55.57 0.76 -21.96 16 13 Si 1.13 29.70 25.97 -169.99 -4.42 25.28 16 14 H -0.33 -8.25 7.11 56.52 0.40 -7.85 16 15 H -0.28 -7.59 6.77 56.52 0.38 -7.21 16 16 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 17 C -0.08 -1.49 3.04 -26.75 -0.08 -1.57 16 18 C -0.08 -1.49 3.57 -26.73 -0.10 -1.59 16 19 C -0.06 -0.92 0.77 -154.51 -0.12 -1.04 16 20 C -0.14 -1.79 8.47 37.16 0.31 -1.47 16 21 C -0.10 -1.37 4.47 -26.73 -0.12 -1.49 16 22 C -0.09 -1.27 3.76 -26.74 -0.10 -1.37 16 23 H 0.05 0.68 8.14 -51.94 -0.42 0.26 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.30 7.56 -51.93 -0.39 0.91 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.28 7.53 8.72 -40.82 -0.36 7.18 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.28 7.31 -51.92 -0.38 0.90 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -28.96 306.89 -7.70 -36.66 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -7.50 Total: -5.03 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.23 Total: -22.98 kcal Atomic # 7 Polarization: -22.72 SS G_CDS: 0.76 Total: -21.96 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.06 Total: -16.60 kcal Atomic # 14 Polarization: 29.70 SS G_CDS: -4.42 Total: 25.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.96 -7.70 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094543998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.114 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds