Wall clock time and date at job start Mon Mar 30 2020 07:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 C 1.52992 * 109.47299 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47414 * 60.00073 * 4 3 2 6 6 C 1.53003 * 109.47163 * 300.00044 * 5 4 3 7 7 C 1.50696 * 109.47504 * 179.97438 * 6 5 4 8 8 O 1.21434 * 120.00071 * 239.99888 * 7 6 5 9 9 C 1.41026 * 119.99969 * 60.00237 * 7 6 5 10 10 H 1.08005 * 119.99925 * 6.38305 * 9 7 6 11 11 C 1.40461 * 120.00388 * 186.38187 * 9 7 6 12 12 N 1.30518 * 120.00199 * 184.87325 * 11 9 7 13 13 Si 1.86799 * 119.99787 * 4.88040 * 11 9 7 14 14 H 1.48500 * 109.47326 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47059 * 300.00150 * 13 11 9 16 16 H 1.48506 * 109.47100 * 59.99697 * 13 11 9 17 17 C 1.53001 * 109.46808 * 240.00207 * 2 1 3 18 18 C 1.52999 * 109.47259 * 300.00286 * 6 5 4 19 19 C 1.53001 * 109.47456 * 59.99493 * 18 6 5 20 20 C 1.52997 * 109.47326 * 180.02562 * 19 18 6 21 21 C 1.53002 * 109.46964 * 300.00310 * 19 18 6 22 22 C 1.52991 * 109.47102 * 60.00014 * 19 18 6 23 23 H 1.08989 * 109.47329 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47176 * 300.00076 * 1 2 3 25 25 H 1.09002 * 109.46917 * 59.99389 * 1 2 3 26 26 H 1.09000 * 109.46842 * 300.00290 * 3 2 1 27 27 H 1.08998 * 109.47123 * 60.00065 * 3 2 1 28 28 H 1.09003 * 109.47375 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47513 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47161 * 59.99717 * 5 4 3 31 31 H 0.96994 * 120.00229 * 354.91939 * 12 11 9 32 32 H 1.08994 * 109.47200 * 60.00167 * 17 2 1 33 33 H 1.08998 * 109.46758 * 299.99697 * 17 2 1 34 34 H 1.08999 * 109.47654 * 180.02562 * 18 6 5 35 35 H 1.09007 * 109.46809 * 299.99908 * 18 6 5 36 36 H 1.09003 * 109.46760 * 299.99671 * 20 19 18 37 37 H 1.09001 * 109.47188 * 59.99781 * 20 19 18 38 38 H 1.08998 * 109.47053 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47123 * 179.97438 * 21 19 18 40 40 H 1.09001 * 109.47284 * 300.00056 * 21 19 18 41 41 H 1.08998 * 109.47262 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.47045 * 60.00291 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 3.5695 -0.7211 -1.2502 7 6 4.0708 -1.4312 -2.4812 8 8 3.2810 -1.8925 -3.2801 9 6 5.4571 -1.5600 -2.7055 10 1 6.1585 -1.2427 -1.9480 11 6 5.9258 -2.1011 -3.9141 12 7 7.2031 -2.3087 -4.0843 13 14 4.7210 -2.5232 -5.2778 14 1 5.4625 -3.0745 -6.4403 15 1 3.7499 -3.5330 -4.7853 16 1 3.9928 -1.2971 -5.6920 17 6 2.0399 -0.7212 -1.2493 18 6 4.0799 -1.4426 -0.0013 19 6 3.5704 -0.7215 1.2483 20 6 4.0814 -1.4426 2.4972 21 6 4.0805 0.7210 1.2483 22 6 2.0405 -0.7214 1.2489 23 1 -0.3633 -1.0275 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.9334 2.4701 -0.0002 29 1 5.1695 0.7210 -1.2504 30 1 3.7158 1.2354 -2.1399 31 1 7.8355 -2.0220 -3.4071 32 1 1.6766 -0.2074 -2.1392 33 1 1.6766 -1.7489 -1.2492 34 1 3.7170 -2.4704 -0.0015 35 1 5.1700 -1.4425 -0.0017 36 1 3.7182 -2.4704 2.4974 37 1 5.1714 -1.4423 2.4966 38 1 3.7188 -0.9286 3.3874 39 1 3.7172 1.2348 2.1383 40 1 5.1705 0.7210 1.2478 41 1 1.6776 -0.2081 2.1393 42 1 1.6771 -1.7490 1.2489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094543998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:05 Heat of formation + Delta-G solvation = -117.974296 kcal Electronic energy + Delta-G solvation = -21814.706000 eV Core-core repulsion = 18948.768534 eV Total energy + Delta-G solvation = -2865.937466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.75349 -39.23498 -35.62497 -35.23571 -34.61855 -33.53124 -29.09013 -27.69857 -27.32936 -26.88221 -26.71915 -23.98001 -21.93533 -20.96380 -20.49186 -19.03304 -18.25484 -16.63765 -16.25595 -15.48552 -15.41421 -15.38014 -15.33703 -15.07639 -15.02004 -14.57647 -14.46129 -13.93690 -13.61276 -13.34623 -12.95248 -12.90304 -12.74014 -12.69379 -12.56952 -12.51531 -12.33408 -11.81754 -11.71892 -11.61041 -11.49338 -11.48104 -11.32437 -11.28375 -10.95231 -10.53300 -10.46155 -9.82977 -8.99592 -7.37437 1.23038 1.47114 1.87965 1.97695 2.34684 3.10081 3.57206 3.60558 3.64619 4.05656 4.14297 4.23958 4.27202 4.33167 4.35811 4.45569 4.47719 4.49414 4.68076 4.72644 4.79365 4.82430 4.87643 4.93761 4.98251 5.01042 5.05267 5.10529 5.16151 5.23686 5.24829 5.27043 5.29848 5.35369 5.37369 5.38554 5.41806 5.59421 5.65181 5.67085 5.71822 5.73244 6.28540 6.48563 7.80871 7.91073 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.007915 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.275324 B = 3536.875452 C = 3947.085445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.095 4.095 4 C -0.083 4.083 5 C -0.085 4.085 6 C -0.083 4.083 7 C 0.353 3.647 8 O -0.613 6.613 9 C -0.588 4.588 10 H 0.066 0.934 11 C 0.024 3.976 12 N -0.819 5.819 13 Si 1.160 2.840 14 H -0.308 1.308 15 H -0.297 1.297 16 H -0.294 1.294 17 C -0.073 4.073 18 C -0.076 4.076 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.094 4.094 22 C -0.088 4.088 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.283 0.717 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 7.813 14.287 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.101 4.101 5 C -0.123 4.123 6 C -0.084 4.084 7 C 0.258 3.742 8 O -0.514 6.514 9 C -0.619 4.619 10 H 0.084 0.916 11 C -0.194 4.194 12 N -0.446 5.446 13 Si 0.993 3.007 14 H -0.239 1.239 15 H -0.226 1.226 16 H -0.222 1.222 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.058 4.058 20 C -0.192 4.192 21 C -0.132 4.132 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.973 6.991 12.564 16.948 hybrid contribution 0.927 0.241 0.932 1.337 sum -8.046 7.232 13.497 17.297 Atomic orbital electron populations 1.21792 0.93368 1.01670 1.02318 1.20557 0.95808 0.95625 0.94039 1.21549 0.94155 0.95114 1.02395 1.21120 0.96269 0.99001 0.93757 1.21352 0.99411 0.93366 0.98182 1.20729 0.96197 0.96431 0.95058 1.20351 0.89259 0.78190 0.86434 1.89843 1.59266 1.53430 1.48896 1.22015 0.95466 1.40621 1.03764 0.91578 1.28193 0.99235 0.89617 1.02378 1.70557 1.03245 1.32973 1.37812 0.81888 0.70442 0.77576 0.70831 1.23894 1.22600 1.22187 1.21250 0.93382 0.99054 0.97436 1.21355 0.99104 0.97402 0.93475 1.20529 0.95939 0.95646 0.93721 1.21803 1.00693 1.00012 0.96723 1.21542 0.99829 0.94087 0.97707 1.21559 0.93585 0.99982 0.97360 0.93266 0.90359 0.93159 0.92739 0.89227 0.89751 0.93456 0.94168 0.90625 0.94378 0.94520 0.94578 0.93745 0.93168 0.93207 0.90321 0.89233 0.92823 0.89304 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.48 71.98 0.61 -2.44 16 2 C -0.06 -1.64 0.77 -52.18 -0.04 -1.68 16 3 C -0.09 -2.30 4.47 30.59 0.14 -2.16 16 4 C -0.08 -2.25 3.19 -10.80 -0.03 -2.28 16 5 C -0.09 -3.21 4.29 30.59 0.13 -3.08 16 6 C -0.08 -3.52 0.60 -52.94 -0.03 -3.55 16 7 C 0.35 19.13 5.62 26.37 0.15 19.27 16 8 O -0.61 -36.26 11.53 -3.51 -0.04 -36.30 16 9 C -0.59 -33.45 8.63 23.50 0.20 -33.24 16 10 H 0.07 3.75 7.21 -2.91 -0.02 3.73 16 11 C 0.02 1.39 5.53 85.43 0.47 1.86 16 12 N -0.82 -46.85 13.64 21.91 0.30 -46.55 16 13 Si 1.16 61.83 25.97 68.60 1.78 63.61 16 14 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 15 H -0.30 -16.58 6.77 99.48 0.67 -15.91 16 16 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 17 C -0.07 -2.83 3.04 30.58 0.09 -2.74 16 18 C -0.08 -2.86 3.57 30.59 0.11 -2.75 16 19 C -0.06 -1.58 0.77 -52.18 -0.04 -1.62 16 20 C -0.14 -3.06 8.47 71.98 0.61 -2.45 16 21 C -0.09 -2.30 4.47 30.60 0.14 -2.16 16 22 C -0.09 -2.15 3.76 30.59 0.11 -2.03 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.28 15.53 8.72 -92.71 -0.81 14.73 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 1.81 7.31 -2.38 -0.02 1.80 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.99 306.89 5.55 -59.44 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 0.89 Total: 0.84 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 2.62 Total: -41.05 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.30 Total: -46.55 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.04 Total: -36.30 kcal Atomic # 14 Polarization: 61.83 SS G_CDS: 1.78 Total: 63.61 kcal Total: -64.99 5.55 -59.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094543998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.532 kcal (2) G-P(sol) polarization free energy of solvation -64.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds