Wall clock time and date at job start Mon Mar 30 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38874 * 120.00397 * 2 1 4 4 C 1.38963 * 120.17141 * 5.24346 * 3 2 1 5 5 C 1.37953 * 120.06147 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.78711 * 179.97438 * 5 4 3 7 7 C 1.38603 * 120.42649 * 0.02562 * 5 4 3 8 8 C 1.37757 * 120.35251 * 359.95352 * 7 5 4 9 9 C 1.39732 * 119.92397 * 0.06707 * 8 7 5 10 10 C 1.47436 * 120.20874 * 180.23005 * 9 8 7 11 11 O 1.21596 * 119.99833 * 130.00288 * 10 9 8 12 12 N 1.34777 * 119.99590 * 310.00415 * 10 9 8 13 13 C 1.46498 * 120.00289 * 4.32090 * 12 10 9 14 14 C 1.46507 * 119.99595 * 184.31626 * 12 10 9 15 15 C 1.50697 * 109.46865 * 89.99973 * 14 12 10 16 16 H 1.08006 * 120.00049 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99969 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00174 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00070 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47270 * 89.99799 * 19 17 15 21 21 H 1.48503 * 109.47383 * 209.99923 * 19 17 15 22 22 H 1.48500 * 109.46799 * 329.99444 * 19 17 15 23 23 H 1.09007 * 109.46571 * 299.99666 * 1 2 3 24 24 H 1.09000 * 109.47373 * 59.99666 * 1 2 3 25 25 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99777 * 180.02562 * 2 1 3 27 27 H 1.07997 * 119.96904 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47111 * 89.99901 * 6 5 4 29 29 H 1.09005 * 109.47208 * 210.00284 * 6 5 4 30 30 H 1.09003 * 109.47007 * 329.99747 * 6 5 4 31 31 H 1.07995 * 119.82780 * 179.97438 * 7 5 4 32 32 H 1.08001 * 120.03610 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47691 * 84.92370 * 13 12 10 34 34 H 1.08998 * 109.46994 * 204.92437 * 13 12 10 35 35 H 1.09006 * 109.46949 * 324.92027 * 13 12 10 36 36 H 1.08998 * 109.47012 * 210.00178 * 14 12 10 37 37 H 1.08994 * 109.46911 * 330.00528 * 14 12 10 38 38 H 0.97001 * 119.99772 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2026 0.0000 4 6 1.4727 2.4057 0.1098 5 6 2.1648 3.5990 0.1101 6 6 1.4138 4.9001 0.2289 7 6 3.5465 3.6091 0.0007 8 6 4.2448 2.4266 -0.1086 9 6 3.5585 1.2095 -0.1109 10 6 4.2999 -0.0600 -0.2225 11 8 4.0829 -0.9619 0.5637 12 7 5.2182 -0.2207 -1.1958 13 6 5.5479 0.8970 -2.0836 14 6 5.8867 -1.5132 -1.3660 15 6 5.0933 -2.3671 -2.3211 16 1 4.1824 -1.9851 -2.7581 17 6 5.5307 -3.6357 -2.6380 18 7 4.8386 -4.3808 -3.4720 19 14 7.1065 -4.2961 -1.8828 20 1 6.7914 -4.9918 -0.6094 21 1 7.7441 -5.2514 -2.8242 22 1 8.0367 -3.1700 -1.6147 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 -0.0004 27 1 0.3961 2.4065 0.1950 28 1 1.3132 5.1668 1.2809 29 1 1.9608 5.6845 -0.2942 30 1 0.4240 4.7901 -0.2143 31 1 4.0786 4.5489 0.0016 32 1 5.3214 2.4404 -0.1931 33 1 6.3066 1.5227 -1.6138 34 1 5.9300 0.5101 -3.0283 35 1 4.6522 1.4898 -2.2695 36 1 6.8880 -1.3544 -1.7663 37 1 5.9564 -2.0159 -0.4014 38 1 5.1462 -5.2734 -3.6946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094919117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:19 Heat of formation + Delta-G solvation = -6.354596 kcal Electronic energy + Delta-G solvation = -19807.397229 eV Core-core repulsion = 16842.759612 eV Total energy + Delta-G solvation = -2964.637617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05872 -38.09905 -35.75526 -34.75123 -32.87564 -32.14868 -29.59119 -28.70499 -27.29103 -26.03150 -25.48758 -22.84199 -21.70444 -21.05030 -19.00212 -16.99136 -16.76857 -16.61629 -15.77003 -15.47983 -14.65396 -14.39156 -14.18198 -14.05333 -13.69914 -13.61718 -13.52546 -12.86750 -12.52426 -12.37651 -12.11477 -12.02587 -11.93906 -11.82303 -11.49900 -11.41171 -10.97711 -10.87499 -10.52260 -10.15941 -9.89924 -9.56155 -9.06874 -8.60442 -8.51773 -7.69913 -7.20913 -6.10143 -4.09093 1.33534 1.79591 3.29010 3.34681 3.35628 3.37110 3.71571 3.83961 4.15534 4.38907 4.86530 4.96369 5.13173 5.23925 5.24962 5.32004 5.48474 5.51229 5.54016 5.64754 5.72436 5.74206 5.79625 5.87408 5.93822 6.13260 6.24765 6.34248 6.54908 6.72239 6.75012 6.95436 6.98887 7.34626 7.52783 7.60042 7.94481 8.26842 8.45882 8.90982 8.98025 9.50348 11.03092 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027706 B = 0.005517 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.378776 B = 5073.933249 C = 5640.422053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.737 5.737 3 C 0.266 3.734 4 C -0.210 4.210 5 C -0.028 4.028 6 C -0.114 4.114 7 C -0.192 4.192 8 C -0.039 4.039 9 C -0.206 4.206 10 C 0.560 3.440 11 O -0.549 6.549 12 N -0.589 5.589 13 C 0.083 3.917 14 C 0.213 3.787 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.416 0.584 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 16.962 5.602 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.366 5.366 3 C 0.158 3.842 4 C -0.232 4.232 5 C -0.029 4.029 6 C -0.171 4.171 7 C -0.212 4.212 8 C -0.058 4.058 9 C -0.214 4.214 10 C 0.348 3.652 11 O -0.428 6.428 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.093 3.907 15 C -0.568 4.568 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.255 0.745 27 H 0.140 0.860 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.631 16.253 5.894 18.182 hybrid contribution 0.944 -0.826 0.149 1.263 sum -4.687 15.427 6.043 17.218 Atomic orbital electron populations 1.21562 0.80430 1.02650 1.00679 1.44683 1.05902 1.06633 1.79377 1.17645 0.89648 0.86698 0.90215 1.20378 0.99405 0.90412 1.13041 1.19692 0.93743 0.94384 0.95064 1.20812 0.99814 0.94327 1.02139 1.20594 0.93392 0.97572 1.09687 1.21071 0.99509 0.90802 0.94425 1.19499 0.92333 0.94399 1.15206 1.18063 0.79650 0.86463 0.81048 1.90712 1.66292 1.43373 1.42420 1.47759 1.40083 1.13415 1.30704 1.21790 1.00151 0.89383 0.94783 1.19707 0.92668 0.80414 0.97916 1.21325 1.10397 0.99121 1.25912 0.90808 1.24852 0.97038 0.96420 0.94652 1.69900 1.39049 1.10061 1.34608 0.86839 0.83871 0.79401 0.79533 1.19894 1.21064 1.19027 0.93065 0.92954 0.90665 0.74495 0.85994 0.91182 0.91492 0.91710 0.86328 0.85672 0.93653 0.90667 0.91681 0.95132 0.94365 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 9.96 59.85 0.60 1.71 16 2 N -0.74 -12.38 5.75 -65.20 -0.37 -12.76 16 3 C 0.27 4.47 6.63 -83.61 -0.55 3.92 16 4 C -0.21 -2.87 8.94 -39.42 -0.35 -3.22 16 5 C -0.03 -0.34 5.88 -104.59 -0.62 -0.95 16 6 C -0.11 -0.98 10.00 36.01 0.36 -0.62 16 7 C -0.19 -2.40 9.67 -39.62 -0.38 -2.78 16 8 C -0.04 -0.57 7.82 -39.20 -0.31 -0.88 16 9 C -0.21 -3.70 4.86 -104.80 -0.51 -4.21 16 10 C 0.56 12.21 6.69 -12.51 -0.08 12.13 16 11 O -0.55 -13.81 15.05 5.28 0.08 -13.73 16 12 N -0.59 -12.74 2.86 -184.23 -0.53 -13.27 16 13 C 0.08 1.38 9.08 59.85 0.54 1.93 16 14 C 0.21 5.33 4.24 -5.19 -0.02 5.31 16 15 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 16 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 H 0.05 0.54 7.74 -51.93 -0.40 0.14 16 24 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.42 8.19 6.64 -40.82 -0.27 7.92 16 27 H 0.12 1.42 6.72 -52.49 -0.35 1.06 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.64 6.40 -52.49 -0.34 1.31 16 33 H 0.05 0.62 7.10 -51.93 -0.37 0.25 16 34 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.06 1.01 6.33 -51.93 -0.33 0.69 16 36 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 37 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -33.83 312.89 -7.09 -40.92 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.32 Total: 5.29 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.77 Total: -1.28 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.13 Total: -52.92 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.83 -7.09 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094919117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.565 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds