Wall clock time and date at job start Mon Mar 30 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38874 * 120.00397 * 2 1 4 4 C 1.38963 * 120.17141 * 5.24346 * 3 2 1 5 5 C 1.37953 * 120.06147 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.78711 * 179.97438 * 5 4 3 7 7 C 1.38603 * 120.42649 * 0.02562 * 5 4 3 8 8 C 1.37757 * 120.35251 * 359.95352 * 7 5 4 9 9 C 1.39732 * 119.92397 * 0.06707 * 8 7 5 10 10 C 1.47436 * 120.20874 * 180.23005 * 9 8 7 11 11 O 1.21596 * 119.99833 * 130.00288 * 10 9 8 12 12 N 1.34777 * 119.99590 * 310.00415 * 10 9 8 13 13 C 1.46498 * 120.00289 * 4.32090 * 12 10 9 14 14 C 1.46507 * 119.99595 * 184.31626 * 12 10 9 15 15 C 1.50697 * 109.46865 * 89.99973 * 14 12 10 16 16 H 1.08006 * 120.00049 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99969 * 179.97438 * 15 14 12 18 18 N 1.31519 * 120.00174 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00070 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47270 * 89.99799 * 19 17 15 21 21 H 1.48503 * 109.47383 * 209.99923 * 19 17 15 22 22 H 1.48500 * 109.46799 * 329.99444 * 19 17 15 23 23 H 1.09007 * 109.46571 * 299.99666 * 1 2 3 24 24 H 1.09000 * 109.47373 * 59.99666 * 1 2 3 25 25 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99777 * 180.02562 * 2 1 3 27 27 H 1.07997 * 119.96904 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47111 * 89.99901 * 6 5 4 29 29 H 1.09005 * 109.47208 * 210.00284 * 6 5 4 30 30 H 1.09003 * 109.47007 * 329.99747 * 6 5 4 31 31 H 1.07995 * 119.82780 * 179.97438 * 7 5 4 32 32 H 1.08001 * 120.03610 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47691 * 84.92370 * 13 12 10 34 34 H 1.08998 * 109.46994 * 204.92437 * 13 12 10 35 35 H 1.09006 * 109.46949 * 324.92027 * 13 12 10 36 36 H 1.08998 * 109.47012 * 210.00178 * 14 12 10 37 37 H 1.08994 * 109.46911 * 330.00528 * 14 12 10 38 38 H 0.97001 * 119.99772 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2026 0.0000 4 6 1.4727 2.4057 0.1098 5 6 2.1648 3.5990 0.1101 6 6 1.4138 4.9001 0.2289 7 6 3.5465 3.6091 0.0007 8 6 4.2448 2.4266 -0.1086 9 6 3.5585 1.2095 -0.1109 10 6 4.2999 -0.0600 -0.2225 11 8 4.0829 -0.9619 0.5637 12 7 5.2182 -0.2207 -1.1958 13 6 5.5479 0.8970 -2.0836 14 6 5.8867 -1.5132 -1.3660 15 6 5.0933 -2.3671 -2.3211 16 1 4.1824 -1.9851 -2.7581 17 6 5.5307 -3.6357 -2.6380 18 7 4.8386 -4.3808 -3.4720 19 14 7.1065 -4.2961 -1.8828 20 1 6.7914 -4.9918 -0.6094 21 1 7.7441 -5.2514 -2.8242 22 1 8.0367 -3.1700 -1.6147 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 -0.0004 27 1 0.3961 2.4065 0.1950 28 1 1.3132 5.1668 1.2809 29 1 1.9608 5.6845 -0.2942 30 1 0.4240 4.7901 -0.2143 31 1 4.0786 4.5489 0.0016 32 1 5.3214 2.4404 -0.1931 33 1 6.3066 1.5227 -1.6138 34 1 5.9300 0.5101 -3.0283 35 1 4.6522 1.4898 -2.2695 36 1 6.8880 -1.3544 -1.7663 37 1 5.9564 -2.0159 -0.4014 38 1 5.1462 -5.2734 -3.6946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094919117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:19 Heat of formation + Delta-G solvation = -29.711057 kcal Electronic energy + Delta-G solvation = -19808.410041 eV Core-core repulsion = 16842.759612 eV Total energy + Delta-G solvation = -2965.650429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40710 -39.51102 -37.02358 -36.34135 -34.79961 -33.50891 -30.68395 -30.51414 -28.38556 -27.42011 -26.74611 -24.59521 -22.90958 -22.24258 -20.52818 -19.16768 -18.22742 -17.89374 -17.19819 -16.90050 -16.29462 -15.90169 -15.48336 -15.21114 -15.02130 -14.74542 -14.63861 -14.29386 -14.14896 -13.86142 -13.68761 -13.25707 -12.99911 -12.94159 -12.84765 -12.72425 -12.54964 -12.43469 -12.07170 -11.94225 -11.77650 -10.95933 -10.85755 -10.72363 -9.62302 -9.43486 -8.38267 -8.36622 -6.42296 0.19957 0.71663 1.31555 1.35442 1.44274 1.79848 2.29037 2.34883 2.55522 2.93657 2.97601 3.71841 3.93983 4.08124 4.26263 4.37000 4.45114 4.53129 4.57878 4.59208 4.67701 4.74120 4.79687 4.87934 4.90197 4.94487 4.96161 4.99697 5.28219 5.33721 5.41891 5.50291 5.58951 5.74986 5.99162 6.20762 6.40268 6.55191 6.58335 6.66926 7.17251 7.34684 8.80227 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027706 B = 0.005517 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.378776 B = 5073.933249 C = 5640.422053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.756 5.756 3 C 0.243 3.757 4 C -0.213 4.213 5 C -0.019 4.019 6 C -0.113 4.113 7 C -0.186 4.186 8 C -0.039 4.039 9 C -0.242 4.242 10 C 0.554 3.446 11 O -0.597 6.597 12 N -0.599 5.599 13 C 0.080 3.920 14 C 0.222 3.778 15 C -0.537 4.537 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.944 5.944 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.239 1.239 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.396 0.604 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 20.125 6.288 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.383 5.383 3 C 0.135 3.865 4 C -0.235 4.235 5 C -0.021 4.021 6 C -0.169 4.169 7 C -0.205 4.205 8 C -0.058 4.058 9 C -0.250 4.250 10 C 0.344 3.656 11 O -0.480 6.480 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.100 3.900 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.198 1.198 22 H -0.162 1.162 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.230 0.770 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.835 19.495 6.557 21.129 hybrid contribution 0.553 -1.701 -0.089 1.791 sum -4.282 17.794 6.468 19.411 Atomic orbital electron populations 1.21763 0.78201 1.03515 1.02050 1.44929 1.07476 1.05975 1.79919 1.18036 0.89671 0.87637 0.91123 1.20664 1.00465 0.89754 1.12629 1.20216 0.94071 0.95414 0.92349 1.20902 1.00075 0.92472 1.03449 1.21007 0.93720 0.97991 1.07821 1.21254 1.00264 0.90264 0.93971 1.19377 0.92855 0.93510 1.19215 1.18771 0.79130 0.87499 0.80156 1.90656 1.67538 1.45532 1.44307 1.47859 1.40123 1.13351 1.31526 1.22030 1.01718 0.88353 0.94075 1.19396 0.93197 0.81648 0.95743 1.21499 1.09282 1.00225 1.26511 0.95604 1.25834 1.01127 0.96534 0.94962 1.70049 1.41356 1.10713 1.36275 0.85698 0.79409 0.79466 0.78284 1.20154 1.19821 1.16168 0.91126 0.91841 0.90241 0.76972 0.84036 0.89723 0.89661 0.90667 0.82843 0.84361 0.89768 0.91216 0.90706 0.92953 0.96116 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.15 9.96 127.77 1.27 3.43 16 2 N -0.76 -26.54 5.75 -360.19 -2.07 -28.61 16 3 C 0.24 8.20 6.63 38.71 0.26 8.45 16 4 C -0.21 -5.40 8.94 22.38 0.20 -5.20 16 5 C -0.02 -0.40 5.88 -19.84 -0.12 -0.52 16 6 C -0.11 -1.39 10.00 71.24 0.71 -0.68 16 7 C -0.19 -3.92 9.67 22.24 0.22 -3.71 16 8 C -0.04 -1.05 7.82 22.52 0.18 -0.87 16 9 C -0.24 -8.71 4.86 -19.98 -0.10 -8.80 16 10 C 0.55 25.07 6.69 86.67 0.58 25.65 16 11 O -0.60 -31.86 15.05 -4.02 -0.06 -31.92 16 12 N -0.60 -26.36 2.86 -855.05 -2.44 -28.80 16 13 C 0.08 2.61 9.08 127.77 1.16 3.77 16 14 C 0.22 11.27 4.24 85.63 0.36 11.64 16 15 C -0.54 -32.35 9.94 25.60 0.25 -32.10 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 17 C 0.01 0.81 5.47 84.65 0.46 1.28 16 18 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 19 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 23 H 0.07 1.42 7.74 -2.38 -0.02 1.40 16 24 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.40 16.88 6.64 -92.71 -0.62 16.26 16 27 H 0.14 2.93 6.72 -2.91 -0.02 2.91 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.80 8.08 -2.38 -0.02 0.78 16 30 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.14 3.26 6.40 -2.91 -0.02 3.24 16 33 H 0.08 2.07 7.10 -2.39 -0.02 2.05 16 34 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16 35 H 0.07 2.27 6.33 -2.38 -0.02 2.26 16 36 H 0.05 2.42 7.13 -2.39 -0.02 2.40 16 37 H 0.02 1.12 6.79 -2.39 -0.02 1.11 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -78.57 312.89 3.44 -75.13 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.39 Total: 24.85 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.44 Total: 2.32 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -4.21 Total: -117.32 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.06 Total: -31.92 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -78.57 3.44 -75.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094919117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.419 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds