Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20827 * 119.99834 * 2 1 4 4 C 1.47562 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.40246 * 120.90941 * 359.97379 * 4 2 1 6 6 C 1.37922 * 119.14159 * 180.02562 * 5 4 2 7 7 N 1.31915 * 121.03052 * 359.72709 * 6 5 4 8 8 C 1.32305 * 122.01130 * 0.56939 * 7 6 5 9 9 N 1.39033 * 119.63484 * 179.70932 * 8 7 6 10 10 C 1.46495 * 119.99902 * 12.64050 * 9 8 7 11 11 C 1.50703 * 109.47205 * 269.99991 * 10 9 8 12 12 H 1.07999 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00296 * 179.97438 * 11 10 9 14 14 N 1.31524 * 120.00170 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00311 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47030 * 60.00043 * 15 13 11 17 17 H 1.48502 * 109.47702 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47235 * 300.00435 * 15 13 11 19 19 C 1.46502 * 120.00001 * 192.64086 * 9 8 7 20 20 C 1.52992 * 109.47003 * 246.02098 * 19 9 8 21 21 C 1.53001 * 109.46730 * 126.02127 * 19 9 8 22 22 C 1.39108 * 120.73397 * 359.43059 * 8 7 6 23 23 H 1.08996 * 109.47247 * 269.99931 * 1 2 3 24 24 H 1.08999 * 109.47202 * 30.00655 * 1 2 3 25 25 H 1.09003 * 109.46606 * 150.00261 * 1 2 3 26 26 H 1.07999 * 120.42639 * 0.02562 * 5 4 2 27 27 H 1.08003 * 119.48320 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47491 * 30.00229 * 10 9 8 29 29 H 1.08995 * 109.47420 * 150.00507 * 10 9 8 30 30 H 0.96995 * 120.00043 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.46997 * 6.02345 * 19 9 8 32 32 H 1.08997 * 109.47446 * 299.99972 * 20 19 9 33 33 H 1.09004 * 109.47616 * 60.00367 * 20 19 9 34 34 H 1.09001 * 109.47140 * 180.02562 * 20 19 9 35 35 H 1.09001 * 109.46698 * 179.97438 * 21 19 9 36 36 H 1.09004 * 109.47222 * 300.00036 * 21 19 9 37 37 H 1.08997 * 109.47202 * 60.00344 * 21 19 9 38 38 H 1.08000 * 120.55143 * 180.29555 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 6 2.2449 -1.2779 0.0006 5 6 1.5630 -2.5035 0.0017 6 6 2.2891 -3.6761 0.0027 7 7 3.6081 -3.6591 -0.0027 8 6 4.2950 -2.5284 0.0018 9 7 5.6848 -2.5682 0.0019 10 6 6.3815 -3.8256 -0.2806 11 6 6.6113 -4.5729 1.0078 12 1 6.2719 -4.1535 1.9433 13 6 7.2538 -5.7926 0.9920 14 7 7.6668 -6.3038 -0.1473 15 14 7.5381 -6.7193 2.5888 16 1 6.2313 -7.0106 3.2315 17 1 8.2433 -7.9944 2.3025 18 1 8.3648 -5.8901 3.5020 19 6 6.4524 -1.3528 0.2844 20 6 7.2273 -0.9366 -0.9674 21 6 7.4346 -1.6239 1.4258 22 6 3.6422 -1.3000 0.0007 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5138 26 1 0.4833 -2.5286 0.0017 27 1 1.7696 -4.6230 0.0040 28 1 5.7748 -4.4346 -0.9507 29 1 7.3404 -3.6116 -0.7523 30 1 8.1192 -7.1617 -0.1583 31 1 5.7716 -0.5521 0.5733 32 1 7.9081 -1.7373 -1.2563 33 1 6.5276 -0.7435 -1.7805 34 1 7.7988 -0.0326 -0.7571 35 1 8.0061 -0.7197 1.6356 36 1 6.8825 -1.9204 2.3176 37 1 8.1154 -2.4246 1.1368 38 1 4.2058 -0.3787 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094997223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = 6.393768 kcal Electronic energy + Delta-G solvation = -19798.467602 eV Core-core repulsion = 16834.382796 eV Total energy + Delta-G solvation = -2964.084806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19245 -38.82370 -36.87567 -32.96614 -32.61085 -31.51248 -30.26377 -28.96982 -26.86627 -26.50006 -24.15759 -22.83787 -22.38370 -20.16430 -18.84634 -17.29123 -16.40362 -16.14747 -15.61540 -15.10246 -15.02434 -14.71016 -14.35589 -13.86323 -13.75762 -13.53313 -12.98718 -12.71469 -12.42966 -12.26868 -12.22107 -11.80060 -11.60169 -11.42080 -11.08661 -11.03423 -10.81659 -10.55179 -10.29858 -10.02315 -9.92268 -9.72814 -9.39750 -9.03330 -8.68839 -8.37664 -6.81588 -5.96566 -4.01064 0.91320 1.80042 2.70731 3.33440 3.37885 3.40867 3.70017 4.07017 4.42329 4.48119 4.93353 5.04988 5.14756 5.26956 5.32778 5.36317 5.48313 5.50549 5.60545 5.62146 5.73089 5.79831 6.04821 6.08106 6.18706 6.27601 6.31201 6.40733 6.44312 6.65660 6.86678 7.03129 7.14461 7.48010 7.50364 7.86828 7.99803 8.29128 8.32399 8.85196 9.03064 9.61745 11.08929 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005914 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.594339 B = 4733.036080 C = 5454.428940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.400 3.600 3 O -0.458 6.458 4 C -0.094 4.094 5 C -0.224 4.224 6 C 0.145 3.855 7 N -0.499 5.499 8 C 0.414 3.586 9 N -0.582 5.582 10 C 0.257 3.743 11 C -0.508 4.508 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.898 5.898 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.145 3.855 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.201 4.201 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.152 0.848 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 9.933 -0.377 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.278 3.722 3 O -0.332 6.332 4 C -0.103 4.103 5 C -0.247 4.247 6 C -0.016 4.016 7 N -0.216 5.216 8 C 0.176 3.824 9 N -0.290 5.290 10 C 0.138 3.862 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.538 5.538 15 Si 0.721 3.279 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.205 1.205 19 C 0.040 3.960 20 C -0.220 4.220 21 C -0.211 4.211 22 C -0.228 4.228 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.253 9.547 -0.472 13.303 hybrid contribution -0.339 -0.074 0.944 1.006 sum -9.592 9.473 0.472 13.489 Atomic orbital electron populations 1.22222 0.93790 1.04835 1.04700 1.22537 0.91607 0.87509 0.70576 1.90398 1.72274 1.34515 1.36040 1.20483 0.93827 0.94698 1.01248 1.21886 1.00403 0.92411 1.10029 1.22445 0.88907 0.97601 0.92603 1.67336 1.08450 1.28985 1.16809 1.18414 0.86350 0.88002 0.89592 1.47310 1.00132 1.11365 1.70235 1.19204 0.91667 0.78627 0.96670 1.21383 1.36276 1.03638 0.93441 0.92643 1.24891 0.95942 0.97163 0.96107 1.69919 1.40034 1.18958 1.24914 0.86652 0.78252 0.79103 0.83917 1.20359 1.21370 1.20459 1.20968 0.93264 0.86606 0.95114 1.22186 1.00594 1.01376 0.97864 1.22116 0.99562 1.01491 0.97975 1.21721 0.93841 0.98299 1.08891 0.88518 0.89672 0.89232 0.85205 0.83077 0.94149 0.95182 0.92875 0.90719 0.91527 0.92920 0.92208 0.93213 0.92561 0.90192 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 9.79 36.01 0.35 -1.34 16 2 C 0.40 5.36 7.24 -30.50 -0.22 5.13 16 3 O -0.46 -7.50 17.16 5.94 0.10 -7.39 16 4 C -0.09 -1.43 5.90 -104.78 -0.62 -2.05 16 5 C -0.22 -3.05 9.43 -38.94 -0.37 -3.41 16 6 C 0.14 2.36 11.16 -17.63 -0.20 2.16 16 7 N -0.50 -10.51 9.26 -12.49 -0.12 -10.62 16 8 C 0.41 8.50 7.30 -155.08 -1.13 7.37 16 9 N -0.58 -12.39 2.50 -167.65 -0.42 -12.81 16 10 C 0.26 6.48 4.37 -5.19 -0.02 6.46 16 11 C -0.51 -13.80 7.85 -34.44 -0.27 -14.07 16 12 H 0.06 1.54 7.52 -52.49 -0.39 1.15 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.15 2.57 3.06 -67.93 -0.21 2.36 16 20 C -0.16 -2.55 9.27 37.15 0.34 -2.20 16 21 C -0.15 -2.72 8.34 37.16 0.31 -2.41 16 22 C -0.20 -3.58 8.78 -38.69 -0.34 -3.92 16 23 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.61 6.55 -51.93 -0.34 0.27 16 26 H 0.13 1.24 6.50 -52.49 -0.34 0.90 16 27 H 0.15 2.02 8.06 -52.48 -0.42 1.59 16 28 H 0.04 1.13 7.60 -51.93 -0.39 0.74 16 29 H 0.03 0.79 6.72 -51.93 -0.35 0.44 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.23 5.60 -51.93 -0.29 0.93 16 32 H 0.07 1.14 6.92 -51.93 -0.36 0.78 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.06 7.95 -51.93 -0.41 0.65 16 37 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 38 H 0.13 2.31 5.74 -52.49 -0.30 2.01 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -31.45 316.11 -7.63 -39.09 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.21 Total: 0.08 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.47 Total: -4.34 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.20 Total: -48.81 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.10 Total: -7.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.45 -7.63 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094997223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.483 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds