Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20827 * 119.99834 * 2 1 4 4 C 1.47562 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.40246 * 120.90941 * 359.97379 * 4 2 1 6 6 C 1.37922 * 119.14159 * 180.02562 * 5 4 2 7 7 N 1.31915 * 121.03052 * 359.72709 * 6 5 4 8 8 C 1.32305 * 122.01130 * 0.56939 * 7 6 5 9 9 N 1.39033 * 119.63484 * 179.70932 * 8 7 6 10 10 C 1.46495 * 119.99902 * 12.64050 * 9 8 7 11 11 C 1.50703 * 109.47205 * 269.99991 * 10 9 8 12 12 H 1.07999 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00296 * 179.97438 * 11 10 9 14 14 N 1.31524 * 120.00170 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00311 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47030 * 60.00043 * 15 13 11 17 17 H 1.48502 * 109.47702 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47235 * 300.00435 * 15 13 11 19 19 C 1.46502 * 120.00001 * 192.64086 * 9 8 7 20 20 C 1.52992 * 109.47003 * 246.02098 * 19 9 8 21 21 C 1.53001 * 109.46730 * 126.02127 * 19 9 8 22 22 C 1.39108 * 120.73397 * 359.43059 * 8 7 6 23 23 H 1.08996 * 109.47247 * 269.99931 * 1 2 3 24 24 H 1.08999 * 109.47202 * 30.00655 * 1 2 3 25 25 H 1.09003 * 109.46606 * 150.00261 * 1 2 3 26 26 H 1.07999 * 120.42639 * 0.02562 * 5 4 2 27 27 H 1.08003 * 119.48320 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47491 * 30.00229 * 10 9 8 29 29 H 1.08995 * 109.47420 * 150.00507 * 10 9 8 30 30 H 0.96995 * 120.00043 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.46997 * 6.02345 * 19 9 8 32 32 H 1.08997 * 109.47446 * 299.99972 * 20 19 9 33 33 H 1.09004 * 109.47616 * 60.00367 * 20 19 9 34 34 H 1.09001 * 109.47140 * 180.02562 * 20 19 9 35 35 H 1.09001 * 109.46698 * 179.97438 * 21 19 9 36 36 H 1.09004 * 109.47222 * 300.00036 * 21 19 9 37 37 H 1.08997 * 109.47202 * 60.00344 * 21 19 9 38 38 H 1.08000 * 120.55143 * 180.29555 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 6 2.2449 -1.2779 0.0006 5 6 1.5630 -2.5035 0.0017 6 6 2.2891 -3.6761 0.0027 7 7 3.6081 -3.6591 -0.0027 8 6 4.2950 -2.5284 0.0018 9 7 5.6848 -2.5682 0.0019 10 6 6.3815 -3.8256 -0.2806 11 6 6.6113 -4.5729 1.0078 12 1 6.2719 -4.1535 1.9433 13 6 7.2538 -5.7926 0.9920 14 7 7.6668 -6.3038 -0.1473 15 14 7.5381 -6.7193 2.5888 16 1 6.2313 -7.0106 3.2315 17 1 8.2433 -7.9944 2.3025 18 1 8.3648 -5.8901 3.5020 19 6 6.4524 -1.3528 0.2844 20 6 7.2273 -0.9366 -0.9674 21 6 7.4346 -1.6239 1.4258 22 6 3.6422 -1.3000 0.0007 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5138 26 1 0.4833 -2.5286 0.0017 27 1 1.7696 -4.6230 0.0040 28 1 5.7748 -4.4346 -0.9507 29 1 7.3404 -3.6116 -0.7523 30 1 8.1192 -7.1617 -0.1583 31 1 5.7716 -0.5521 0.5733 32 1 7.9081 -1.7373 -1.2563 33 1 6.5276 -0.7435 -1.7805 34 1 7.7988 -0.0326 -0.7571 35 1 8.0061 -0.7197 1.6356 36 1 6.8825 -1.9204 2.3176 37 1 8.1154 -2.4246 1.1368 38 1 4.2058 -0.3787 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094997223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -12.134469 kcal Electronic energy + Delta-G solvation = -19799.271047 eV Core-core repulsion = 16834.382796 eV Total energy + Delta-G solvation = -2964.888251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47665 -40.05479 -38.34263 -34.89399 -34.04399 -32.89622 -31.53646 -30.25182 -28.53096 -27.95840 -25.66870 -24.17759 -24.07154 -21.44416 -20.23133 -18.63009 -18.45697 -17.54878 -16.89136 -16.57794 -16.26760 -16.09507 -15.68986 -15.37433 -15.07502 -14.93168 -14.41274 -14.26985 -13.96963 -13.42177 -13.30265 -13.06346 -12.99804 -12.92937 -12.77780 -12.62509 -12.41612 -12.30711 -12.10996 -11.62357 -11.51663 -11.03773 -10.84608 -10.58759 -10.54020 -10.07027 -8.44932 -8.00052 -6.21761 -0.28435 0.48929 1.38032 1.40229 1.47673 1.57954 2.23333 2.45285 3.02603 3.09538 3.17693 3.70034 3.93862 4.06662 4.13658 4.19752 4.24452 4.34657 4.40987 4.63941 4.72730 4.78068 4.81508 4.86026 4.93885 4.95192 4.97155 5.15416 5.16968 5.22723 5.31226 5.42381 5.48722 5.70177 5.81075 6.18278 6.34194 6.48409 6.65457 6.89369 7.42299 7.50611 8.94576 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005914 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.594339 B = 4733.036080 C = 5454.428940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.403 3.597 3 O -0.494 6.494 4 C -0.101 4.101 5 C -0.187 4.187 6 C 0.127 3.873 7 N -0.550 5.550 8 C 0.385 3.615 9 N -0.600 5.600 10 C 0.283 3.717 11 C -0.507 4.507 12 H 0.044 0.956 13 C 0.010 3.990 14 N -0.932 5.932 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.141 3.859 20 C -0.153 4.153 21 C -0.145 4.145 22 C -0.212 4.212 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.185 0.815 27 H 0.178 0.822 28 H 0.002 0.998 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 11.067 0.532 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.283 3.717 3 O -0.371 6.371 4 C -0.110 4.110 5 C -0.209 4.209 6 C -0.032 4.032 7 N -0.268 5.268 8 C 0.150 3.850 9 N -0.310 5.310 10 C 0.162 3.838 11 C -0.546 4.546 12 H 0.062 0.938 13 C -0.188 4.188 14 N -0.573 5.573 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.195 1.195 19 C 0.038 3.962 20 C -0.211 4.211 21 C -0.203 4.203 22 C -0.238 4.238 23 H 0.138 0.862 24 H 0.114 0.886 25 H 0.133 0.867 26 H 0.202 0.798 27 H 0.195 0.805 28 H 0.020 0.980 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.955 10.701 0.443 16.051 hybrid contribution 0.306 -0.387 0.637 0.806 sum -11.649 10.314 1.081 15.596 Atomic orbital electron populations 1.22270 0.89054 1.06672 1.06595 1.23132 0.93790 0.85777 0.68998 1.90399 1.73494 1.35352 1.37821 1.20991 0.93062 0.96824 1.00119 1.22387 1.02778 0.90419 1.05344 1.23048 0.87707 1.00047 0.92407 1.67249 1.11077 1.30215 1.18225 1.18632 0.86006 0.89031 0.91343 1.47149 1.00910 1.10783 1.72172 1.18529 0.90250 0.80082 0.94915 1.21528 1.35586 1.03865 0.93632 0.93763 1.25670 0.95852 0.98110 0.99196 1.70039 1.40971 1.19381 1.26873 0.85668 0.78112 0.78009 0.80166 1.20310 1.20692 1.19515 1.21177 0.93413 0.85812 0.95845 1.22111 1.00163 1.01881 0.96967 1.22029 0.99057 1.02012 0.97200 1.21736 0.95357 0.97015 1.09687 0.86233 0.88580 0.86729 0.79789 0.80465 0.97961 0.97070 0.92827 0.89148 0.93748 0.92973 0.88925 0.89555 0.94301 0.93348 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 9.79 71.24 0.70 -1.55 16 2 C 0.40 9.55 7.24 28.15 0.20 9.75 16 3 O -0.49 -15.32 17.16 -1.65 -0.03 -15.35 16 4 C -0.10 -2.85 5.90 -19.96 -0.12 -2.97 16 5 C -0.19 -4.40 9.43 22.68 0.21 -4.19 16 6 C 0.13 3.93 11.16 84.61 0.94 4.88 16 7 N -0.55 -23.66 9.26 -193.44 -1.79 -25.45 16 8 C 0.38 16.29 7.30 133.07 0.97 17.26 16 9 N -0.60 -26.79 2.50 -684.32 -1.71 -28.50 16 10 C 0.28 15.20 4.37 85.63 0.37 15.58 16 11 C -0.51 -28.76 7.85 25.60 0.20 -28.56 16 12 H 0.04 2.56 7.52 -2.91 -0.02 2.54 16 13 C 0.01 0.55 5.46 84.65 0.46 1.01 16 14 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 15 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.14 5.12 3.06 44.99 0.14 5.26 16 20 C -0.15 -4.89 9.27 71.98 0.67 -4.22 16 21 C -0.14 -5.26 8.34 71.98 0.60 -4.66 16 22 C -0.21 -7.52 8.78 22.84 0.20 -7.32 16 23 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 0.80 6.55 -2.39 -0.02 0.79 16 26 H 0.18 2.30 6.50 -2.91 -0.02 2.28 16 27 H 0.18 4.33 8.06 -2.91 -0.02 4.30 16 28 H 0.00 0.14 7.60 -2.39 -0.02 0.12 16 29 H 0.01 0.64 6.72 -2.39 -0.02 0.62 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.09 2.98 5.60 -2.39 -0.01 2.97 16 32 H 0.04 1.60 6.92 -2.39 -0.02 1.58 16 33 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.50 7.95 -2.39 -0.02 1.48 16 37 H 0.05 2.04 6.93 -2.39 -0.02 2.03 16 38 H 0.13 4.62 5.74 -2.91 -0.02 4.60 16 Total: -1.00 -73.32 316.11 5.39 -67.92 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.06 Total: 9.60 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.56 Total: 0.28 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.22 Total: -109.75 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.03 Total: -15.35 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.32 5.39 -67.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094997223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.789 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds