Wall clock time and date at job start Mon Mar 30 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47423 * 2 1 4 4 O 1.42902 * 109.46860 * 119.99938 * 2 1 3 5 5 C 1.50700 * 109.47220 * 239.99453 * 2 1 3 6 6 C 1.38880 * 120.74926 * 279.72450 * 5 2 1 7 7 C 1.38025 * 119.32570 * 179.75465 * 6 5 2 8 8 N 1.31970 * 120.85921 * 0.52401 * 7 6 5 9 9 C 1.32395 * 121.62174 * 359.75190 * 8 7 6 10 10 N 1.39007 * 119.70570 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00042 * 268.30269 * 10 9 8 12 12 C 1.50698 * 109.46800 * 90.00094 * 11 10 9 13 13 H 1.08003 * 120.00461 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46997 * 119.99807 * 16 14 12 19 19 H 1.48497 * 109.47169 * 239.99776 * 16 14 12 20 20 C 1.46496 * 119.99973 * 88.30444 * 10 9 8 21 21 C 1.53004 * 117.49761 * 3.38671 * 20 10 9 22 22 C 1.52996 * 117.50220 * 294.72392 * 20 10 9 23 23 C 1.38302 * 120.74394 * 100.00216 * 5 2 1 24 24 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46891 * 299.99871 * 1 2 3 26 26 H 1.08997 * 109.47214 * 59.99999 * 1 2 3 27 27 H 0.96695 * 114.00740 * 60.00369 * 4 2 1 28 28 H 1.07996 * 120.33440 * 359.97438 * 6 5 2 29 29 H 1.08004 * 119.57062 * 180.30054 * 7 6 5 30 30 H 1.08996 * 109.47517 * 210.00181 * 11 10 9 31 31 H 1.09004 * 109.47065 * 330.00625 * 11 10 9 32 32 H 0.96994 * 120.00476 * 180.02562 * 15 14 12 33 33 H 1.09001 * 115.54732 * 149.05081 * 20 10 9 34 34 H 1.08997 * 117.50134 * 359.97438 * 21 20 10 35 35 H 1.09001 * 117.49842 * 145.02230 * 21 20 10 36 36 H 1.09000 * 117.50184 * 214.98135 * 22 20 10 37 37 H 1.09004 * 117.49588 * 0.02562 * 22 20 10 38 38 H 1.08008 * 120.44978 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 6 2.0790 -2.0976 -1.2800 7 6 2.5396 -2.7181 -2.4237 8 7 2.9439 -2.0104 -3.4617 9 6 2.9201 -0.6867 -3.4511 10 7 3.3560 0.0190 -4.5665 11 6 4.7555 0.4406 -4.6657 12 6 5.5578 -0.6376 -5.3474 13 1 5.0736 -1.5459 -5.6745 14 6 6.9100 -0.4646 -5.5536 15 7 7.4998 0.6412 -5.1549 16 14 7.9047 -1.8015 -6.3979 17 1 7.0130 -2.9368 -6.7458 18 1 8.5166 -1.2558 -7.6362 19 1 8.9752 -2.2741 -5.4837 20 6 2.4159 0.3412 -5.6429 21 6 0.9518 -0.0567 -5.4447 22 6 1.8265 -0.8250 -6.4387 23 6 2.4627 0.0043 -2.3334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.7210 -1.5952 1.2330 28 1 1.7548 -2.6849 -0.4337 29 1 2.5730 -3.7967 -2.4684 30 1 4.8174 1.3613 -5.2459 31 1 5.1546 0.6135 -3.6662 32 1 8.4510 0.7631 -5.3003 33 1 2.6173 1.2672 -6.1814 34 1 0.6882 -0.5585 -4.5137 35 1 0.1901 0.6073 -5.8534 36 1 1.6398 -0.6662 -7.5008 37 1 2.1379 -1.8321 -6.1611 38 1 2.4438 1.0842 -2.3273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095003229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:08 Heat of formation + Delta-G solvation = 25.924368 kcal Electronic energy + Delta-G solvation = -19791.677337 eV Core-core repulsion = 16828.439442 eV Total energy + Delta-G solvation = -2963.237896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14239 -37.84133 -36.73997 -33.72547 -32.69887 -32.18004 -29.81946 -29.63237 -26.46134 -24.22969 -23.23883 -22.31275 -21.92028 -21.57713 -19.51845 -17.28574 -16.66079 -16.14304 -15.77836 -15.46717 -15.36170 -14.78604 -14.32268 -14.26650 -13.72782 -13.51151 -13.06342 -12.51910 -12.39187 -12.22754 -12.07813 -11.75130 -11.22012 -11.12833 -11.01956 -10.92886 -10.58134 -10.47624 -10.39724 -10.10799 -9.70604 -9.36263 -9.25506 -8.94765 -8.48844 -8.34779 -6.90047 -5.91672 -3.97469 1.50801 1.58280 3.34929 3.42322 3.49251 3.96967 4.10718 4.34502 4.42419 4.53396 4.60003 4.88996 4.96333 5.06939 5.27217 5.32399 5.39084 5.44263 5.47581 5.55615 5.62011 5.71323 5.82130 5.91362 5.99683 6.06942 6.30473 6.36811 6.46316 6.49451 6.75123 6.85608 7.25378 7.42040 7.45192 7.99881 8.33492 8.42062 8.49845 8.78207 9.14891 9.68315 11.12514 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.005986 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.476229 B = 4676.676890 C = 5249.065604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.145 3.855 3 H 0.110 0.890 4 O -0.556 6.556 5 C -0.076 4.076 6 C -0.191 4.191 7 C 0.110 3.890 8 N -0.484 5.484 9 C 0.416 3.584 10 N -0.635 5.635 11 C 0.277 3.723 12 C -0.517 4.517 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.903 5.903 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.140 3.860 21 C -0.206 4.206 22 C -0.205 4.205 23 C -0.166 4.166 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.373 0.627 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.030 0.970 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.144 -1.720 7.672 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 H 0.127 0.873 4 O -0.361 6.361 5 C -0.084 4.084 6 C -0.211 4.211 7 C -0.048 4.048 8 N -0.196 5.196 9 C 0.188 3.812 10 N -0.360 5.360 11 C 0.158 3.842 12 C -0.556 4.556 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.544 5.544 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C 0.033 3.967 21 C -0.245 4.245 22 C -0.245 4.245 23 C -0.189 4.189 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.221 0.779 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.323 -1.437 7.031 16.021 hybrid contribution 0.189 -1.059 0.043 1.076 sum -14.134 -2.495 7.074 16.002 Atomic orbital electron populations 1.22462 0.95316 1.02814 1.02965 1.20806 0.92984 0.96124 0.81494 0.87270 1.86633 1.77418 1.29068 1.42999 1.20782 0.97399 0.94278 0.95986 1.21647 1.05182 0.94321 0.99985 1.22522 0.93924 0.99837 0.88561 1.67837 1.13273 1.09336 1.29128 1.18101 0.89041 0.86336 0.87678 1.45779 1.09987 1.62792 1.17420 1.18985 0.73855 0.94728 0.96637 1.21838 0.92974 1.03790 1.37015 0.91731 1.24978 0.97768 0.95685 0.96093 1.69943 1.10807 1.25674 1.47930 0.86520 0.80003 0.82263 0.79131 1.19744 1.21145 1.21220 1.21128 0.86978 0.96649 0.91941 1.23208 0.94608 1.05131 1.01504 1.23445 1.05049 0.99648 0.96345 1.22232 1.01417 1.01291 0.93976 0.92141 0.91438 0.91204 0.77924 0.85895 0.83542 0.95184 0.96165 0.93052 0.86604 0.90033 0.89165 0.89584 0.88485 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.52 37.16 0.35 -1.22 16 2 C 0.14 1.65 3.86 -27.88 -0.11 1.54 16 3 H 0.11 1.25 8.04 -51.93 -0.42 0.83 16 4 O -0.56 -6.47 13.20 -35.23 -0.46 -6.93 16 5 C -0.08 -1.07 5.00 -104.36 -0.52 -1.59 16 6 C -0.19 -2.55 9.41 -39.42 -0.37 -2.92 16 7 C 0.11 1.75 11.17 -17.57 -0.20 1.55 16 8 N -0.48 -9.78 10.39 -12.44 -0.13 -9.91 16 9 C 0.42 8.38 4.45 -155.02 -0.69 7.69 16 10 N -0.63 -13.79 2.79 -167.62 -0.47 -14.26 16 11 C 0.28 7.20 5.48 -5.19 -0.03 7.17 16 12 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 13 H 0.06 1.93 7.81 -52.48 -0.41 1.52 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 16 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.14 2.61 6.56 -67.93 -0.45 2.16 16 21 C -0.21 -3.23 9.84 -26.69 -0.26 -3.50 16 22 C -0.20 -3.60 10.37 -26.69 -0.28 -3.88 16 23 C -0.17 -2.81 9.68 -39.22 -0.38 -3.19 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.37 2.99 7.59 45.56 0.35 3.33 16 28 H 0.12 1.17 6.89 -52.49 -0.36 0.80 16 29 H 0.15 1.91 8.06 -52.48 -0.42 1.48 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 31 H 0.02 0.57 8.05 -51.93 -0.42 0.15 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.08 1.35 7.06 -51.93 -0.37 0.98 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -32.57 325.63 -8.77 -41.35 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.99 Total: 3.55 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.35 Total: -9.82 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.14 Total: -50.44 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.46 Total: -6.93 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.57 -8.77 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095003229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.270 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds