Wall clock time and date at job start Mon Mar 30 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47423 * 2 1 4 4 O 1.42902 * 109.46860 * 119.99938 * 2 1 3 5 5 C 1.50700 * 109.47220 * 239.99453 * 2 1 3 6 6 C 1.38880 * 120.74926 * 279.72450 * 5 2 1 7 7 C 1.38025 * 119.32570 * 179.75465 * 6 5 2 8 8 N 1.31970 * 120.85921 * 0.52401 * 7 6 5 9 9 C 1.32395 * 121.62174 * 359.75190 * 8 7 6 10 10 N 1.39007 * 119.70570 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00042 * 268.30269 * 10 9 8 12 12 C 1.50698 * 109.46800 * 90.00094 * 11 10 9 13 13 H 1.08003 * 120.00461 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46997 * 119.99807 * 16 14 12 19 19 H 1.48497 * 109.47169 * 239.99776 * 16 14 12 20 20 C 1.46496 * 119.99973 * 88.30444 * 10 9 8 21 21 C 1.53004 * 117.49761 * 3.38671 * 20 10 9 22 22 C 1.52996 * 117.50220 * 294.72392 * 20 10 9 23 23 C 1.38302 * 120.74394 * 100.00216 * 5 2 1 24 24 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46891 * 299.99871 * 1 2 3 26 26 H 1.08997 * 109.47214 * 59.99999 * 1 2 3 27 27 H 0.96695 * 114.00740 * 60.00369 * 4 2 1 28 28 H 1.07996 * 120.33440 * 359.97438 * 6 5 2 29 29 H 1.08004 * 119.57062 * 180.30054 * 7 6 5 30 30 H 1.08996 * 109.47517 * 210.00181 * 11 10 9 31 31 H 1.09004 * 109.47065 * 330.00625 * 11 10 9 32 32 H 0.96994 * 120.00476 * 180.02562 * 15 14 12 33 33 H 1.09001 * 115.54732 * 149.05081 * 20 10 9 34 34 H 1.08997 * 117.50134 * 359.97438 * 21 20 10 35 35 H 1.09001 * 117.49842 * 145.02230 * 21 20 10 36 36 H 1.09000 * 117.50184 * 214.98135 * 22 20 10 37 37 H 1.09004 * 117.49588 * 0.02562 * 22 20 10 38 38 H 1.08008 * 120.44978 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 6 2.0790 -2.0976 -1.2800 7 6 2.5396 -2.7181 -2.4237 8 7 2.9439 -2.0104 -3.4617 9 6 2.9201 -0.6867 -3.4511 10 7 3.3560 0.0190 -4.5665 11 6 4.7555 0.4406 -4.6657 12 6 5.5578 -0.6376 -5.3474 13 1 5.0736 -1.5459 -5.6745 14 6 6.9100 -0.4646 -5.5536 15 7 7.4998 0.6412 -5.1549 16 14 7.9047 -1.8015 -6.3979 17 1 7.0130 -2.9368 -6.7458 18 1 8.5166 -1.2558 -7.6362 19 1 8.9752 -2.2741 -5.4837 20 6 2.4159 0.3412 -5.6429 21 6 0.9518 -0.0567 -5.4447 22 6 1.8265 -0.8250 -6.4387 23 6 2.4627 0.0043 -2.3334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.7210 -1.5952 1.2330 28 1 1.7548 -2.6849 -0.4337 29 1 2.5730 -3.7967 -2.4684 30 1 4.8174 1.3613 -5.2459 31 1 5.1546 0.6135 -3.6662 32 1 8.4510 0.7631 -5.3003 33 1 2.6173 1.2672 -6.1814 34 1 0.6882 -0.5585 -4.5137 35 1 0.1901 0.6073 -5.8534 36 1 1.6398 -0.6662 -7.5008 37 1 2.1379 -1.8321 -6.1611 38 1 2.4438 1.0842 -2.3273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095003229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:08 Heat of formation + Delta-G solvation = 4.168534 kcal Electronic energy + Delta-G solvation = -19792.620741 eV Core-core repulsion = 16828.439442 eV Total energy + Delta-G solvation = -2964.181299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39892 -39.02943 -37.95169 -35.56440 -34.08281 -33.76506 -31.17282 -30.72207 -28.38629 -25.34321 -24.72317 -24.08991 -23.19781 -22.83400 -20.83093 -18.59303 -18.36682 -17.61511 -17.30274 -16.90947 -16.56045 -16.19487 -15.81569 -15.41351 -14.99026 -14.60218 -14.45637 -14.32579 -13.79721 -13.49863 -13.30807 -12.98222 -12.89490 -12.74986 -12.47459 -12.36972 -12.17052 -12.09553 -12.01297 -11.40063 -11.33032 -11.16725 -10.60297 -10.47290 -10.29159 -9.76439 -8.63551 -8.03881 -6.27938 0.23977 0.37272 1.34936 1.35806 1.49579 2.36225 2.52493 2.87732 3.06858 3.12202 3.48674 3.57018 3.77150 3.94375 4.06973 4.10375 4.21857 4.25389 4.28424 4.37023 4.53853 4.74209 4.79933 4.85876 4.92143 4.94880 5.09077 5.10143 5.14302 5.23712 5.26768 5.34019 5.37155 5.69901 5.76355 6.20311 6.57064 6.77787 6.93519 6.99574 7.37055 7.45724 8.89637 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.005986 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.476229 B = 4676.676890 C = 5249.065604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 H 0.104 0.896 4 O -0.568 6.568 5 C -0.069 4.069 6 C -0.173 4.173 7 C 0.095 3.905 8 N -0.529 5.529 9 C 0.381 3.619 10 N -0.642 5.642 11 C 0.296 3.704 12 C -0.527 4.527 13 H 0.046 0.954 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.279 1.279 20 C 0.108 3.892 21 C -0.167 4.167 22 C -0.209 4.209 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.390 0.610 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.014 0.986 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.804 -2.738 8.773 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.091 3.909 3 H 0.122 0.878 4 O -0.376 6.376 5 C -0.078 4.078 6 C -0.192 4.192 7 C -0.063 4.063 8 N -0.242 5.242 9 C 0.155 3.845 10 N -0.367 5.367 11 C 0.174 3.826 12 C -0.566 4.566 13 H 0.064 0.936 14 C -0.191 4.191 15 N -0.573 5.573 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.205 1.205 20 C 0.002 3.998 21 C -0.204 4.204 22 C -0.249 4.249 23 C -0.200 4.200 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.240 0.760 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.021 -2.467 8.138 18.138 hybrid contribution 0.653 -0.799 -0.198 1.051 sum -15.367 -3.266 7.940 17.603 Atomic orbital electron populations 1.22395 0.92918 1.03895 1.03533 1.20795 0.94620 0.95455 0.80057 0.87817 1.86622 1.77849 1.30540 1.42580 1.21170 0.95830 0.94824 0.95968 1.22097 1.02581 0.94285 1.00265 1.23056 0.93723 1.00974 0.88547 1.67691 1.15098 1.09781 1.31584 1.18250 0.91543 0.86668 0.88070 1.45523 1.08616 1.63491 1.19060 1.18432 0.76612 0.93491 0.94033 1.21982 0.93676 1.03664 1.37285 0.93556 1.25769 0.98795 0.97867 0.96686 1.70041 1.11281 1.27251 1.48768 0.85512 0.78329 0.79359 0.78462 1.19959 1.19834 1.20523 1.21378 0.88726 0.97316 0.92378 1.23175 0.93223 1.03725 1.00324 1.23373 1.05927 0.97749 0.97823 1.22253 1.02021 1.01541 0.94145 0.90818 0.90149 0.91370 0.76005 0.81166 0.81096 0.96824 0.99274 0.92677 0.86186 0.90779 0.85664 0.87557 0.91431 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.52 71.98 0.69 -1.76 16 2 C 0.15 3.03 3.86 29.85 0.12 3.15 16 3 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 4 O -0.57 -11.41 13.20 -148.98 -1.97 -13.37 16 5 C -0.07 -1.82 5.00 -19.70 -0.10 -1.92 16 6 C -0.17 -4.13 9.41 22.37 0.21 -3.92 16 7 C 0.09 2.91 11.17 84.62 0.95 3.85 16 8 N -0.53 -21.78 10.39 -193.26 -2.01 -23.79 16 9 C 0.38 15.78 4.45 133.06 0.59 16.37 16 10 N -0.64 -29.18 2.79 -684.23 -1.91 -31.09 16 11 C 0.30 16.26 5.48 85.63 0.47 16.73 16 12 C -0.53 -31.41 9.39 25.60 0.24 -31.17 16 13 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 16 Si 0.96 46.76 29.54 68.60 2.03 48.78 16 17 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 C 0.11 4.12 6.56 44.99 0.30 4.41 16 21 C -0.17 -5.05 9.84 30.62 0.30 -4.75 16 22 C -0.21 -7.38 10.37 30.62 0.32 -7.07 16 23 C -0.18 -6.04 9.68 22.50 0.22 -5.82 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.39 4.59 7.59 -74.06 -0.56 4.03 16 28 H 0.17 2.38 6.89 -2.91 -0.02 2.36 16 29 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.01 0.78 8.07 -2.39 -0.02 0.76 16 31 H -0.01 -0.64 8.05 -2.38 -0.02 -0.66 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 34 H 0.07 2.39 7.06 -2.39 -0.02 2.37 16 35 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -73.44 325.63 1.67 -71.77 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.49 Total: 15.52 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.75 Total: -11.04 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.63 Total: -111.66 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.97 Total: -13.37 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.44 1.67 -71.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095003229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.937 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds