Wall clock time and date at job start Mon Mar 30 2020 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36008 * 116.99714 * 2 1 4 4 C 1.38478 * 120.04569 * 0.25846 * 3 2 1 5 5 C 1.38845 * 119.94958 * 180.25192 * 4 3 2 6 6 N 1.39985 * 119.98583 * 179.74275 * 5 4 3 7 7 C 1.46499 * 119.99996 * 359.72274 * 6 5 4 8 8 C 1.50703 * 109.47219 * 89.99757 * 7 6 5 9 9 H 1.07996 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00012 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00204 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99711 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47162 * 90.00216 * 12 10 8 14 14 H 1.48504 * 109.46778 * 209.99667 * 12 10 8 15 15 H 1.48495 * 109.47398 * 329.99635 * 12 10 8 16 16 C 1.46499 * 119.99868 * 179.72537 * 6 5 4 17 17 C 1.52999 * 117.49608 * 188.62098 * 16 6 5 18 18 C 1.52997 * 60.00104 * 252.51109 * 17 16 6 19 19 C 1.38850 * 120.03080 * 359.46470 * 5 4 3 20 20 C 1.38212 * 120.08040 * 0.30295 * 19 5 4 21 21 C 1.38677 * 120.05643 * 359.95048 * 20 19 5 22 22 N 1.40291 * 120.01738 * 180.02562 * 21 20 19 23 23 H 1.09010 * 109.46837 * 59.99867 * 1 2 3 24 24 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47169 * 300.00185 * 1 2 3 26 26 H 1.08002 * 120.02536 * 0.02562 * 4 3 2 27 27 H 1.08998 * 109.47416 * 209.99938 * 7 6 5 28 28 H 1.09008 * 109.47058 * 330.00537 * 7 6 5 29 29 H 0.97000 * 120.00290 * 180.02562 * 11 10 8 30 30 H 1.08997 * 115.55300 * 334.32661 * 16 6 5 31 31 H 1.09005 * 117.49951 * 0.02562 * 17 16 6 32 32 H 1.09006 * 117.50176 * 145.01458 * 17 16 6 33 33 H 1.09000 * 117.49599 * 252.51248 * 18 17 16 34 34 H 1.09000 * 117.49830 * 107.49330 * 18 17 16 35 35 H 1.07991 * 119.95974 * 180.27510 * 19 5 4 36 36 H 1.08001 * 119.96877 * 179.97438 * 20 19 5 37 37 H 0.96997 * 120.00064 * 359.97438 * 22 21 20 38 38 H 0.97000 * 119.99835 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3738 0.0054 5 6 1.9254 3.6099 0.0001 6 7 1.1646 4.7850 0.0001 7 6 -0.2985 4.7103 -0.0004 8 6 -0.8007 4.6843 1.4202 9 1 -0.1001 4.7194 2.2413 10 6 -2.1546 4.6146 1.6717 11 7 -3.0077 4.5703 0.6718 12 14 -2.7770 4.5830 3.4326 13 1 -3.0141 5.9729 3.8988 14 1 -4.0475 3.8166 3.4949 15 1 -1.7645 3.9345 4.3041 16 6 1.8315 6.0893 0.0006 17 6 0.9582 7.3291 0.2040 18 6 1.5492 7.0275 -1.1746 19 6 3.3121 3.6811 0.0006 20 6 4.0652 2.5222 0.0001 21 6 3.4373 1.2858 0.0001 22 7 4.2025 0.1100 0.0001 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2145 2.3186 0.0100 27 1 -0.7066 5.5807 -0.5141 28 1 -0.6158 3.8029 -0.5145 29 1 -3.9602 4.5216 0.8486 30 1 2.8345 6.1044 0.4270 31 1 -0.1124 7.1741 0.3379 32 1 1.3866 8.1600 0.7646 33 1 2.3665 7.6600 -1.5211 34 1 0.8673 6.6742 -1.9481 35 1 3.8027 4.6431 0.0010 36 1 5.1437 2.5797 0.0001 37 1 5.1711 0.1617 -0.0003 38 1 3.7630 -0.7548 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104237132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:35 Heat of formation + Delta-G solvation = 27.551582 kcal Electronic energy + Delta-G solvation = -19970.100690 eV Core-core repulsion = 17006.933356 eV Total energy + Delta-G solvation = -2963.167334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.66822 -37.97260 -36.49791 -34.38503 -33.07619 -31.52049 -29.51451 -27.90903 -27.30376 -25.47623 -23.26449 -21.89828 -21.63256 -21.15622 -19.26292 -17.66440 -16.59640 -16.42898 -15.94649 -15.66037 -15.18411 -14.91647 -14.45248 -14.09479 -13.75231 -13.45075 -12.91099 -12.62451 -12.37371 -12.18130 -11.76672 -11.38506 -11.30482 -10.93682 -10.84402 -10.81944 -10.63591 -10.54301 -10.31336 -10.03022 -9.88035 -9.71067 -9.43943 -8.50475 -8.05743 -7.52062 -6.20792 -5.75791 -4.16021 2.07800 2.46688 3.25381 3.32466 3.37369 3.77924 4.04095 4.38828 4.41717 4.50811 4.71646 5.21444 5.39286 5.45184 5.52262 5.59123 5.64893 5.69956 5.84659 5.91634 6.07610 6.10075 6.16386 6.24433 6.38205 6.53205 6.67849 6.83904 6.88219 7.02023 7.18701 7.30597 7.37265 7.70064 7.82811 8.17153 8.19653 8.33947 8.36285 8.59090 8.94985 9.50599 10.95786 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.007840 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.708065 B = 3570.369711 C = 4878.029587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.328 6.328 3 C 0.096 3.904 4 C -0.228 4.228 5 C 0.229 3.771 6 N -0.587 5.587 7 C 0.251 3.749 8 C -0.524 4.524 9 H 0.060 0.940 10 C 0.061 3.939 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.102 3.898 17 C -0.182 4.182 18 C -0.210 4.210 19 C -0.203 4.203 20 C -0.121 4.121 21 C 0.115 3.885 22 N -0.890 5.890 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.141 0.859 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.387 0.613 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 -3.617 -2.504 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.242 6.242 3 C 0.048 3.952 4 C -0.251 4.251 5 C 0.124 3.876 6 N -0.293 5.293 7 C 0.132 3.868 8 C -0.563 4.563 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.005 4.005 17 C -0.220 4.220 18 C -0.249 4.249 19 C -0.227 4.227 20 C -0.144 4.144 21 C 0.014 3.986 22 N -0.435 5.435 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.158 0.842 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.214 0.786 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.850 -3.598 -2.539 10.790 hybrid contribution -0.621 -0.033 1.018 1.193 sum 9.229 -3.631 -1.521 10.034 Atomic orbital electron populations 1.22943 0.78510 1.02672 1.02185 1.85863 1.21217 1.27190 1.89917 1.18187 0.89977 0.84190 1.02858 1.20747 1.00729 0.90156 1.13515 1.17397 0.89909 0.86223 0.94074 1.46475 1.06295 0.99989 1.76577 1.19203 0.73093 0.97662 0.96854 1.21601 0.91626 1.50309 0.92750 0.92188 1.24944 0.96735 0.95233 0.97167 1.69930 1.02435 1.50608 1.30628 0.86580 0.78246 0.78157 0.85021 1.20605 1.21198 1.19829 1.21212 0.96557 0.81786 1.00953 1.23328 1.01956 0.98297 0.98398 1.23413 1.03795 1.04820 0.92910 1.20268 0.91887 0.97679 1.12844 1.19991 0.98292 0.90015 1.06148 1.16790 0.87138 0.87514 1.07168 1.42026 1.07054 1.05155 1.89222 0.92801 0.89222 0.92253 0.84193 0.95028 0.95144 0.92736 0.87128 0.86732 0.89341 0.89453 0.89092 0.86711 0.86667 0.78602 0.77889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.33 -5.69 9.74 -19.77 -0.19 -5.89 16 3 C 0.10 1.82 6.70 -39.10 -0.26 1.56 16 4 C -0.23 -4.75 8.19 -39.27 -0.32 -5.07 16 5 C 0.23 4.74 6.56 -83.68 -0.55 4.19 16 6 N -0.59 -12.61 2.94 -165.48 -0.49 -13.09 16 7 C 0.25 6.22 4.21 -5.19 -0.02 6.20 16 8 C -0.52 -14.05 9.19 -34.44 -0.32 -14.37 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 12 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 16 C 0.10 1.86 5.98 -67.93 -0.41 1.45 16 17 C -0.18 -3.23 9.72 -26.73 -0.26 -3.49 16 18 C -0.21 -3.43 10.13 -26.73 -0.27 -3.71 16 19 C -0.20 -3.63 9.28 -39.36 -0.37 -3.99 16 20 C -0.12 -1.97 9.89 -39.43 -0.39 -2.36 16 21 C 0.12 1.96 6.77 -83.43 -0.57 1.39 16 22 N -0.89 -11.95 9.11 32.56 0.30 -11.65 16 23 H 0.05 0.84 7.67 -51.92 -0.40 0.44 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 26 H 0.14 3.14 4.38 -52.49 -0.23 2.91 16 27 H 0.03 0.82 6.33 -51.93 -0.33 0.49 16 28 H 0.03 0.81 6.21 -51.92 -0.32 0.48 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.11 1.80 6.42 -51.93 -0.33 1.47 16 31 H 0.11 2.41 6.29 -51.93 -0.33 2.08 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.61 8.12 -51.93 -0.42 1.18 16 35 H 0.11 1.84 6.12 -52.49 -0.32 1.51 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.39 4.15 8.85 -40.82 -0.36 3.79 16 38 H 0.39 5.06 8.19 -40.82 -0.33 4.72 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -29.13 312.64 -7.80 -36.93 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.01 Total: 12.51 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.83 Total: -15.15 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.55 Total: -49.25 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.19 Total: -5.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.13 -7.80 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104237132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.481 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds