Wall clock time and date at job start Mon Mar 30 2020 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36008 * 116.99714 * 2 1 4 4 C 1.38478 * 120.04569 * 0.25846 * 3 2 1 5 5 C 1.38845 * 119.94958 * 180.25192 * 4 3 2 6 6 N 1.39985 * 119.98583 * 179.74275 * 5 4 3 7 7 C 1.46499 * 119.99996 * 359.72274 * 6 5 4 8 8 C 1.50703 * 109.47219 * 89.99757 * 7 6 5 9 9 H 1.07996 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00012 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00204 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99711 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47162 * 90.00216 * 12 10 8 14 14 H 1.48504 * 109.46778 * 209.99667 * 12 10 8 15 15 H 1.48495 * 109.47398 * 329.99635 * 12 10 8 16 16 C 1.46499 * 119.99868 * 179.72537 * 6 5 4 17 17 C 1.52999 * 117.49608 * 188.62098 * 16 6 5 18 18 C 1.52997 * 60.00104 * 252.51109 * 17 16 6 19 19 C 1.38850 * 120.03080 * 359.46470 * 5 4 3 20 20 C 1.38212 * 120.08040 * 0.30295 * 19 5 4 21 21 C 1.38677 * 120.05643 * 359.95048 * 20 19 5 22 22 N 1.40291 * 120.01738 * 180.02562 * 21 20 19 23 23 H 1.09010 * 109.46837 * 59.99867 * 1 2 3 24 24 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47169 * 300.00185 * 1 2 3 26 26 H 1.08002 * 120.02536 * 0.02562 * 4 3 2 27 27 H 1.08998 * 109.47416 * 209.99938 * 7 6 5 28 28 H 1.09008 * 109.47058 * 330.00537 * 7 6 5 29 29 H 0.97000 * 120.00290 * 180.02562 * 11 10 8 30 30 H 1.08997 * 115.55300 * 334.32661 * 16 6 5 31 31 H 1.09005 * 117.49951 * 0.02562 * 17 16 6 32 32 H 1.09006 * 117.50176 * 145.01458 * 17 16 6 33 33 H 1.09000 * 117.49599 * 252.51248 * 18 17 16 34 34 H 1.09000 * 117.49830 * 107.49330 * 18 17 16 35 35 H 1.07991 * 119.95974 * 180.27510 * 19 5 4 36 36 H 1.08001 * 119.96877 * 179.97438 * 20 19 5 37 37 H 0.96997 * 120.00064 * 359.97438 * 22 21 20 38 38 H 0.97000 * 119.99835 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3738 0.0054 5 6 1.9254 3.6099 0.0001 6 7 1.1646 4.7850 0.0001 7 6 -0.2985 4.7103 -0.0004 8 6 -0.8007 4.6843 1.4202 9 1 -0.1001 4.7194 2.2413 10 6 -2.1546 4.6146 1.6717 11 7 -3.0077 4.5703 0.6718 12 14 -2.7770 4.5830 3.4326 13 1 -3.0141 5.9729 3.8988 14 1 -4.0475 3.8166 3.4949 15 1 -1.7645 3.9345 4.3041 16 6 1.8315 6.0893 0.0006 17 6 0.9582 7.3291 0.2040 18 6 1.5492 7.0275 -1.1746 19 6 3.3121 3.6811 0.0006 20 6 4.0652 2.5222 0.0001 21 6 3.4373 1.2858 0.0001 22 7 4.2025 0.1100 0.0001 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2145 2.3186 0.0100 27 1 -0.7066 5.5807 -0.5141 28 1 -0.6158 3.8029 -0.5145 29 1 -3.9602 4.5216 0.8486 30 1 2.8345 6.1044 0.4270 31 1 -0.1124 7.1741 0.3379 32 1 1.3866 8.1600 0.7646 33 1 2.3665 7.6600 -1.5211 34 1 0.8673 6.6742 -1.9481 35 1 3.8027 4.6431 0.0010 36 1 5.1437 2.5797 0.0001 37 1 5.1711 0.1617 -0.0003 38 1 3.7630 -0.7548 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104237132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:35 Heat of formation + Delta-G solvation = 9.378708 kcal Electronic energy + Delta-G solvation = -19970.888725 eV Core-core repulsion = 17006.933356 eV Total energy + Delta-G solvation = -2963.955369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07779 -39.43921 -37.86254 -35.81297 -34.97825 -33.10133 -30.94490 -29.64644 -28.71214 -27.03210 -25.06771 -23.32203 -23.04558 -22.59113 -20.76563 -19.14335 -18.52415 -17.90461 -17.29133 -17.08458 -16.69505 -16.55904 -15.84013 -15.69745 -15.20485 -14.86803 -14.61198 -14.08155 -13.95795 -13.67315 -13.28431 -13.01594 -12.95730 -12.62845 -12.59332 -12.29717 -12.22006 -12.09251 -11.89103 -11.73814 -11.42853 -11.23578 -11.08694 -10.62372 -9.44209 -9.01857 -8.24746 -7.24475 -6.33503 0.65468 1.02859 1.35295 1.36393 1.47135 2.33091 2.45644 2.56980 3.01790 3.08169 3.28088 3.33086 4.02441 4.03839 4.16907 4.25917 4.34699 4.37541 4.51621 4.56818 4.70005 4.74017 4.85112 4.88212 4.99028 5.06925 5.14773 5.26565 5.39898 5.40658 5.50392 5.61664 5.72929 5.93331 6.12009 6.35330 6.56855 6.88084 6.90923 7.07440 7.33329 7.38060 8.85292 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.007840 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.708065 B = 3570.369711 C = 4878.029587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.078 3.922 4 C -0.251 4.251 5 C 0.196 3.804 6 N -0.600 5.600 7 C 0.274 3.726 8 C -0.528 4.528 9 H 0.046 0.954 10 C 0.015 3.985 11 N -0.927 5.927 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.274 1.274 16 C 0.085 3.915 17 C -0.189 4.189 18 C -0.189 4.189 19 C -0.195 4.195 20 C -0.114 4.114 21 C 0.120 3.880 22 N -0.875 5.875 23 H 0.042 0.958 24 H 0.128 0.872 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.011 0.989 28 H 0.002 0.998 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.404 0.596 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.906 -3.764 -1.893 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.241 6.241 3 C 0.029 3.971 4 C -0.275 4.275 5 C 0.093 3.907 6 N -0.308 5.308 7 C 0.153 3.847 8 C -0.567 4.567 9 H 0.065 0.935 10 C -0.184 4.184 11 N -0.567 5.567 12 Si 0.779 3.221 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.199 1.199 16 C -0.020 4.020 17 C -0.227 4.227 18 C -0.228 4.228 19 C -0.218 4.218 20 C -0.138 4.138 21 C 0.017 3.983 22 N -0.421 5.421 23 H 0.061 0.939 24 H 0.146 0.854 25 H 0.056 0.944 26 H 0.127 0.873 27 H 0.028 0.972 28 H 0.020 0.980 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.234 0.766 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.629 -3.768 -1.932 13.319 hybrid contribution -1.398 -0.071 0.785 1.606 sum 11.230 -3.838 -1.147 11.923 Atomic orbital electron populations 1.23033 0.77815 1.04603 1.00661 1.85845 1.21877 1.26565 1.89838 1.18384 0.91064 0.83916 1.03723 1.20651 0.99543 0.91682 1.15611 1.17715 0.91299 0.85651 0.96043 1.46321 1.04875 1.01721 1.77898 1.18625 0.75823 0.95096 0.95195 1.21723 0.91713 1.50028 0.93269 0.93537 1.25690 0.96913 0.94843 1.00955 1.70035 1.02712 1.51414 1.32544 0.85614 0.77666 0.78456 0.80327 1.19699 1.20483 1.19866 1.21588 0.97381 0.80420 1.02597 1.23265 0.99712 0.99363 1.00348 1.23421 1.03926 1.03930 0.91512 1.20548 0.90473 0.99490 1.11277 1.20419 1.00167 0.88885 1.04290 1.17011 0.86616 0.89140 1.05556 1.41976 1.07847 1.04237 1.88031 0.93880 0.85387 0.94365 0.87304 0.97157 0.98046 0.92539 0.84390 0.90924 0.86314 0.85488 0.91229 0.84403 0.82610 0.76594 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 9.81 113.37 1.11 2.19 16 2 O -0.33 -11.36 9.74 -93.65 -0.91 -12.27 16 3 C 0.08 2.95 6.70 22.58 0.15 3.10 16 4 C -0.25 -10.93 8.19 22.47 0.18 -10.75 16 5 C 0.20 8.22 6.56 38.13 0.25 8.47 16 6 N -0.60 -26.56 2.94 -677.47 -1.99 -28.55 16 7 C 0.27 14.46 4.21 85.63 0.36 14.82 16 8 C -0.53 -29.70 9.19 25.60 0.24 -29.47 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 10 C 0.01 0.84 5.46 84.65 0.46 1.30 16 11 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 12 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 C 0.09 3.06 5.98 44.99 0.27 3.33 16 17 C -0.19 -6.67 9.72 30.59 0.30 -6.37 16 18 C -0.19 -5.96 10.13 30.59 0.31 -5.65 16 19 C -0.19 -6.53 9.28 22.41 0.21 -6.32 16 20 C -0.11 -3.33 9.89 22.37 0.22 -3.11 16 21 C 0.12 3.80 6.77 38.14 0.26 4.06 16 22 N -0.88 -20.72 9.11 -50.90 -0.46 -21.18 16 23 H 0.04 1.44 7.67 -2.38 -0.02 1.42 16 24 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 25 H 0.04 1.36 7.65 -2.39 -0.02 1.34 16 26 H 0.11 5.34 4.38 -2.91 -0.01 5.32 16 27 H 0.01 0.59 6.33 -2.39 -0.02 0.57 16 28 H 0.00 0.09 6.21 -2.38 -0.01 0.08 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.14 4.12 6.42 -2.39 -0.02 4.10 16 31 H 0.07 3.21 6.29 -2.38 -0.02 3.19 16 32 H 0.12 3.39 8.14 -2.38 -0.02 3.37 16 33 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 35 H 0.14 3.91 6.12 -2.92 -0.02 3.89 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.40 6.99 8.85 -92.71 -0.82 6.17 16 38 H 0.40 9.14 8.19 -92.71 -0.76 8.38 16 Total: -1.00 -66.06 312.64 2.78 -63.28 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.48 Total: 30.76 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.32 Total: -24.39 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -2.17 Total: -103.76 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.91 Total: -12.27 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.06 2.78 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104237132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.659 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds