Wall clock time and date at job start Mon Mar 30 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47021 * 2 1 4 4 C 1.50704 * 109.47200 * 240.00284 * 2 1 3 5 5 H 1.07998 * 119.99707 * 239.99478 * 4 2 1 6 6 C 1.37871 * 120.00025 * 60.00317 * 4 2 1 7 7 N 1.31513 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99896 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47394 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47130 * 119.99615 * 8 6 4 11 11 H 1.48507 * 109.47047 * 239.99484 * 8 6 4 12 12 O 1.45197 * 109.47372 * 119.99793 * 2 1 3 13 13 C 1.34227 * 117.00288 * 270.00223 * 12 2 1 14 14 O 1.20825 * 119.99799 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99893 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47167 * 299.99862 * 15 13 12 17 17 C 1.52996 * 109.47001 * 60.00054 * 15 13 12 18 18 C 1.53001 * 109.46686 * 180.02562 * 15 13 12 19 19 C 1.50706 * 109.46607 * 174.99874 * 18 15 13 20 20 C 1.38238 * 119.99744 * 90.00198 * 19 18 15 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00173 * 269.97579 * 19 18 15 25 25 H 1.09002 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47390 * 299.99913 * 1 2 3 27 27 H 1.09008 * 109.47201 * 60.00004 * 1 2 3 28 28 H 0.97006 * 119.99933 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46738 * 179.97438 * 17 15 13 30 30 H 1.08998 * 109.47178 * 299.99779 * 17 15 13 31 31 H 1.09007 * 109.46972 * 60.00219 * 17 15 13 32 32 H 1.08997 * 109.47212 * 55.00577 * 18 15 13 33 33 H 1.08995 * 109.47163 * 294.99987 * 18 15 13 34 34 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 38 38 H 1.07999 * 120.00025 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 8 2.0140 -0.6844 1.1855 13 6 2.2171 0.0641 2.2811 14 8 1.9981 1.2519 2.2503 15 6 2.7183 -0.5772 3.5495 16 1 2.0088 -1.3369 3.8774 17 6 4.0782 -1.2280 3.2890 18 6 2.8624 0.4889 4.6374 19 6 3.2450 -0.1693 5.9380 20 6 4.5784 -0.3451 6.2576 21 6 4.9294 -0.9483 7.4508 22 6 3.9471 -1.3753 8.3247 23 6 2.6137 -1.2040 8.0028 24 6 2.2627 -0.5968 6.8116 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7083 1.1610 -3.4845 29 1 4.4409 -1.6914 4.2065 30 1 3.9751 -1.9875 2.5141 31 1 4.7878 -0.4682 2.9611 32 1 1.9145 1.0128 4.7605 33 1 3.6360 1.2003 4.3487 34 1 5.3458 -0.0111 5.5751 35 1 5.9711 -1.0860 7.7004 36 1 4.2214 -1.8470 9.2567 37 1 1.8461 -1.5416 8.6835 38 1 1.2210 -0.4595 6.5619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:20 Heat of formation + Delta-G solvation = -84.947306 kcal Electronic energy + Delta-G solvation = -19197.899738 eV Core-core repulsion = 16197.561335 eV Total energy + Delta-G solvation = -3000.338403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95034 -39.13600 -36.01491 -34.73244 -33.23926 -31.10165 -30.88907 -29.44459 -26.70255 -25.33054 -24.13871 -22.60686 -21.71247 -20.57208 -19.18884 -17.14788 -16.73412 -16.44837 -15.64085 -15.43622 -15.04495 -14.90885 -14.54281 -13.74558 -13.45174 -13.38620 -13.07738 -12.70501 -12.43973 -12.17102 -11.96599 -11.73697 -11.31344 -11.18947 -11.13134 -10.99686 -10.97160 -10.82859 -10.80124 -10.34533 -10.27750 -9.56300 -9.46702 -9.00524 -8.88850 -8.76240 -8.49022 -6.18050 -4.24803 1.24690 1.29865 3.03317 3.23648 3.30285 3.35162 3.57329 3.80537 4.33548 4.75510 4.79516 4.90448 4.99702 5.03885 5.10562 5.15143 5.36393 5.42138 5.42837 5.71211 5.81223 5.84698 5.94502 5.99157 6.05206 6.24922 6.35670 6.38238 6.40156 6.59909 6.65481 6.89357 6.90938 6.92952 7.19565 7.61108 7.74035 7.95372 8.15461 8.66052 8.90774 9.40817 10.89461 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042980 B = 0.003756 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.308145 B = 7452.251039 C = 7758.212070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.355 6.355 13 C 0.455 3.545 14 O -0.523 6.523 15 C -0.079 4.079 16 H 0.102 0.898 17 C -0.145 4.145 18 C -0.068 4.068 19 C -0.073 4.073 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.117 4.117 25 H 0.036 0.964 26 H 0.015 0.985 27 H 0.099 0.901 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -4.250 18.266 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.271 6.271 13 C 0.298 3.702 14 O -0.413 6.413 15 C -0.098 4.098 16 H 0.120 0.880 17 C -0.202 4.202 18 C -0.105 4.105 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.135 4.135 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.023 -3.788 18.044 19.110 hybrid contribution 0.121 -0.265 -0.861 0.909 sum 5.144 -4.053 17.184 18.389 Atomic orbital electron populations 1.22158 0.97634 1.00075 1.01376 1.20627 0.91354 0.93924 0.77949 0.93627 1.21072 1.32341 1.13411 0.88913 0.91271 1.24895 0.94962 0.95109 0.99093 1.69913 1.36156 1.22641 1.24036 0.86228 0.78632 0.79503 0.81824 1.19465 1.20717 1.20756 1.86478 1.75606 1.43642 1.21330 1.23322 0.74700 0.85936 0.86240 1.90589 1.48939 1.17005 1.84800 1.20918 0.99809 0.98507 0.90575 0.88031 1.21816 0.94502 1.01271 1.02604 1.20503 1.03728 0.96438 0.89875 1.19905 0.93402 0.98148 0.95840 1.21134 0.95775 0.99387 0.96885 1.21139 0.99306 0.98974 0.94466 1.21120 0.93156 1.00745 0.99632 1.21131 0.96272 0.99398 0.96990 1.21124 0.99365 0.98741 0.94223 0.94454 0.96567 0.88263 0.92475 0.91445 0.90881 0.92195 0.89917 0.90038 0.85873 0.86217 0.86398 0.86226 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.33 37.15 0.35 -3.63 16 2 C 0.21 5.81 2.56 -27.88 -0.07 5.74 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.70 8.90 -34.44 -0.31 -15.01 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 O -0.35 -8.50 9.77 -39.25 -0.38 -8.89 16 13 C 0.46 9.51 7.23 36.01 0.26 9.77 16 14 O -0.52 -12.33 15.14 -18.75 -0.28 -12.61 16 15 C -0.08 -1.19 2.82 -91.77 -0.26 -1.45 16 16 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 17 C -0.14 -1.95 8.70 37.16 0.32 -1.63 16 18 C -0.07 -0.92 4.19 -27.88 -0.12 -1.03 16 19 C -0.07 -0.85 4.71 -104.62 -0.49 -1.34 16 20 C -0.11 -1.20 7.96 -39.58 -0.32 -1.52 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 22 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 2.72 6.07 -51.92 -0.32 2.40 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.07 0.76 6.27 -51.93 -0.33 0.44 16 30 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 33 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 34 H 0.12 1.18 8.04 -52.49 -0.42 0.75 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -30.98 321.17 -8.14 -39.12 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.61 Total: 1.01 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.30 Total: -14.77 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.63 Total: -24.84 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.67 Total: -21.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.98 -8.14 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.828 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds