Wall clock time and date at job start Mon Mar 30 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47021 * 2 1 4 4 C 1.50704 * 109.47200 * 240.00284 * 2 1 3 5 5 H 1.07998 * 119.99707 * 239.99478 * 4 2 1 6 6 C 1.37871 * 120.00025 * 60.00317 * 4 2 1 7 7 N 1.31513 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99896 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47394 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47130 * 119.99615 * 8 6 4 11 11 H 1.48507 * 109.47047 * 239.99484 * 8 6 4 12 12 O 1.45197 * 109.47372 * 119.99793 * 2 1 3 13 13 C 1.34227 * 117.00288 * 270.00223 * 12 2 1 14 14 O 1.20825 * 119.99799 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99893 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47167 * 299.99862 * 15 13 12 17 17 C 1.52996 * 109.47001 * 60.00054 * 15 13 12 18 18 C 1.53001 * 109.46686 * 180.02562 * 15 13 12 19 19 C 1.50706 * 109.46607 * 174.99874 * 18 15 13 20 20 C 1.38238 * 119.99744 * 90.00198 * 19 18 15 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00173 * 269.97579 * 19 18 15 25 25 H 1.09002 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47390 * 299.99913 * 1 2 3 27 27 H 1.09008 * 109.47201 * 60.00004 * 1 2 3 28 28 H 0.97006 * 119.99933 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46738 * 179.97438 * 17 15 13 30 30 H 1.08998 * 109.47178 * 299.99779 * 17 15 13 31 31 H 1.09007 * 109.46972 * 60.00219 * 17 15 13 32 32 H 1.08997 * 109.47212 * 55.00577 * 18 15 13 33 33 H 1.08995 * 109.47163 * 294.99987 * 18 15 13 34 34 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 38 38 H 1.07999 * 120.00025 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 8 2.0140 -0.6844 1.1855 13 6 2.2171 0.0641 2.2811 14 8 1.9981 1.2519 2.2503 15 6 2.7183 -0.5772 3.5495 16 1 2.0088 -1.3369 3.8774 17 6 4.0782 -1.2280 3.2890 18 6 2.8624 0.4889 4.6374 19 6 3.2450 -0.1693 5.9380 20 6 4.5784 -0.3451 6.2576 21 6 4.9294 -0.9483 7.4508 22 6 3.9471 -1.3753 8.3247 23 6 2.6137 -1.2040 8.0028 24 6 2.2627 -0.5968 6.8116 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7083 1.1610 -3.4845 29 1 4.4409 -1.6914 4.2065 30 1 3.9751 -1.9875 2.5141 31 1 4.7878 -0.4682 2.9611 32 1 1.9145 1.0128 4.7605 33 1 3.6360 1.2003 4.3487 34 1 5.3458 -0.0111 5.5751 35 1 5.9711 -1.0860 7.7004 36 1 4.2214 -1.8470 9.2567 37 1 1.8461 -1.5416 8.6835 38 1 1.2210 -0.4595 6.5619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:20 Heat of formation + Delta-G solvation = -100.248805 kcal Electronic energy + Delta-G solvation = -19198.563261 eV Core-core repulsion = 16197.561335 eV Total energy + Delta-G solvation = -3001.001926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51697 -40.15411 -37.78379 -36.03404 -35.31686 -32.15225 -31.74345 -31.32889 -27.71400 -27.48372 -25.58543 -23.42480 -23.13748 -21.92535 -20.77589 -18.85609 -18.47478 -17.63050 -17.25330 -16.93665 -16.39554 -16.06291 -15.85664 -15.02806 -14.93407 -14.53568 -14.19462 -13.93857 -13.86376 -13.67349 -13.32053 -13.18370 -13.08102 -12.94425 -12.82325 -12.41694 -12.26220 -12.15261 -12.14264 -11.86167 -11.75290 -11.58853 -11.19876 -10.98356 -10.61315 -9.75120 -9.57560 -8.29921 -6.46938 0.46406 0.55748 1.32607 1.41528 1.42306 1.56290 2.01721 2.40987 2.93199 3.00762 3.67104 3.81442 3.87784 4.12196 4.13832 4.22775 4.32917 4.36980 4.52488 4.55728 4.69959 4.75489 4.78468 4.81440 4.86430 4.89440 5.06929 5.15186 5.20433 5.22670 5.27070 5.47798 5.61590 5.63394 5.68408 5.77573 5.91057 6.08390 6.17678 6.58857 6.96245 7.25392 8.78122 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042980 B = 0.003756 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.308145 B = 7452.251039 C = 7758.212070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.276 1.276 12 O -0.361 6.361 13 C 0.448 3.552 14 O -0.554 6.554 15 C -0.068 4.068 16 H 0.120 0.880 17 C -0.139 4.139 18 C -0.059 4.059 19 C -0.087 4.087 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.081 0.919 28 H 0.271 0.729 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -5.974 19.462 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.201 1.201 12 O -0.277 6.277 13 C 0.294 3.706 14 O -0.446 6.446 15 C -0.087 4.087 16 H 0.138 0.862 17 C -0.196 4.196 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.024 -5.514 19.267 20.927 hybrid contribution -0.184 0.320 -1.114 1.174 sum 5.840 -5.194 18.153 19.764 Atomic orbital electron populations 1.21987 0.96829 1.00415 1.00797 1.20342 0.91999 0.92049 0.79382 0.97626 1.21332 1.33335 1.13862 0.89935 0.91392 1.25859 0.94715 0.95677 1.02229 1.70029 1.36644 1.23750 1.25175 0.85116 0.78361 0.78426 0.77380 1.18631 1.19633 1.20100 1.86477 1.75992 1.43755 1.21494 1.24562 0.73531 0.85750 0.86807 1.90569 1.50207 1.18561 1.85244 1.21064 1.00886 0.99107 0.87607 0.86231 1.21806 0.93266 1.00837 1.03670 1.20375 1.02940 0.95822 0.90530 1.19732 0.94303 0.99543 0.95158 1.21281 0.95380 0.99664 0.97764 1.21444 1.00702 0.98180 0.93845 1.21495 0.92846 0.99858 1.00393 1.21420 0.97296 0.98820 0.96704 1.21277 0.99463 0.99152 0.94829 0.93485 0.95841 0.90062 0.91987 0.88632 0.91818 0.92489 0.91086 0.90862 0.85287 0.83998 0.83899 0.84208 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 2 C 0.22 12.11 2.56 29.85 0.08 12.19 16 3 H 0.01 0.37 7.16 -2.38 -0.02 0.36 16 4 C -0.55 -31.49 8.90 25.60 0.23 -31.27 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.31 11.32 21.44 0.24 -53.07 16 8 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 O -0.36 -17.73 9.77 -51.39 -0.50 -18.23 16 13 C 0.45 19.21 7.23 71.24 0.51 19.73 16 14 O -0.55 -27.18 15.14 21.97 0.33 -26.85 16 15 C -0.07 -2.02 2.82 -11.54 -0.03 -2.06 16 16 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 17 C -0.14 -3.60 8.70 71.98 0.63 -2.97 16 18 C -0.06 -1.59 4.19 29.85 0.13 -1.46 16 19 C -0.09 -1.92 4.71 -19.86 -0.09 -2.02 16 20 C -0.12 -2.36 7.96 22.27 0.18 -2.18 16 21 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 23 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 4.57 6.07 -2.38 -0.01 4.56 16 28 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 29 H 0.10 1.96 6.27 -2.39 -0.01 1.94 16 30 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 33 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 34 H 0.13 2.24 8.04 -2.91 -0.02 2.22 16 35 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -67.64 321.17 6.76 -60.89 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.03 Total: 15.37 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.63 Total: -23.25 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.24 Total: -53.07 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.17 Total: -45.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.64 6.76 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.363 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds