Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.52996 * 109.47255 * 240.00165 * 2 1 3 5 5 C 1.50700 * 109.47144 * 65.00224 * 4 2 1 6 6 C 1.38244 * 119.99818 * 269.72356 * 5 4 2 7 7 C 1.38225 * 119.99769 * 179.76815 * 6 5 4 8 8 C 1.38236 * 120.00553 * 0.50663 * 7 6 5 9 9 C 1.38237 * 119.99436 * 359.74641 * 8 7 6 10 10 C 1.38232 * 120.00317 * 89.99598 * 5 4 2 11 11 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 12 12 O 1.20833 * 119.99747 * 120.00770 * 11 2 1 13 13 O 1.34230 * 120.00262 * 299.72392 * 11 2 1 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 2 15 15 H 1.09000 * 109.47281 * 330.00745 * 14 13 11 16 16 C 1.53000 * 109.46662 * 90.00373 * 14 13 11 17 17 C 1.50695 * 109.47280 * 210.00118 * 14 13 11 18 18 H 1.08003 * 120.00156 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00318 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99731 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00302 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47070 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47305 * 120.00395 * 21 19 17 24 24 H 1.48495 * 109.47669 * 240.00388 * 21 19 17 25 25 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 26 26 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 27 27 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47051 * 184.99481 * 4 2 1 29 29 H 1.08997 * 109.46989 * 304.99822 * 4 2 1 30 30 H 1.08001 * 119.99364 * 359.97438 * 6 5 4 31 31 H 1.08004 * 120.00164 * 180.23091 * 7 6 5 32 32 H 1.07997 * 120.00305 * 179.72646 * 8 7 6 33 33 H 1.07998 * 119.99761 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00236 * 0.02562 * 10 5 4 35 35 H 1.09000 * 109.47394 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.47630 * 300.00223 * 16 14 13 37 37 H 1.09000 * 109.46969 * 60.00181 * 16 14 13 38 38 H 0.97006 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4765 6 6 0.4382 -0.2088 -3.1031 7 6 0.0704 0.5084 -4.2260 8 6 0.9104 1.4844 -4.7287 9 6 2.1160 1.7468 -4.1052 10 6 2.4814 1.0332 -2.9791 11 6 2.0323 -0.7104 1.2305 12 8 2.7270 -1.6927 1.1196 13 8 1.7126 -0.2486 2.4496 14 6 2.2364 -0.9795 3.5896 15 1 2.3497 -2.0311 3.3262 16 6 3.5979 -0.4028 3.9832 17 6 1.2827 -0.8521 4.7494 18 1 0.3735 -0.2794 4.6405 19 6 1.5702 -1.4674 5.9492 20 7 2.6771 -2.1651 6.0817 21 14 0.3877 -1.3100 7.3867 22 1 -0.7749 -0.4792 6.9825 23 1 -0.0846 -2.6592 7.7891 24 1 1.0821 -0.6671 8.5310 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1264 -0.7993 -1.2056 29 1 1.6055 -1.7197 -1.2951 30 1 -0.2159 -0.9747 -2.7132 31 1 -0.8714 0.3032 -4.7134 32 1 0.6250 2.0417 -5.6087 33 1 2.7725 2.5090 -4.4982 34 1 3.4236 1.2377 -2.4925 35 1 3.9910 -0.9511 4.8392 36 1 4.2878 -0.4949 3.1443 37 1 3.4846 0.6488 4.2466 38 1 2.8796 -2.5978 6.9260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = -84.972825 kcal Electronic energy + Delta-G solvation = -19197.057801 eV Core-core repulsion = 16196.718291 eV Total energy + Delta-G solvation = -3000.339510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94917 -39.13565 -36.01496 -34.73154 -33.23924 -31.10173 -30.89066 -29.44521 -26.70068 -25.33050 -24.13953 -22.60740 -21.71254 -20.57175 -19.18877 -17.14800 -16.73474 -16.44817 -15.64025 -15.43602 -15.04362 -14.90917 -14.54340 -13.74686 -13.45304 -13.38456 -13.07700 -12.70447 -12.44137 -12.17106 -11.96548 -11.73724 -11.31179 -11.18885 -11.13143 -10.99759 -10.97400 -10.82820 -10.80137 -10.34565 -10.27751 -9.56330 -9.46691 -9.00583 -8.88866 -8.76229 -8.49024 -6.18061 -4.24795 1.24662 1.29886 3.03337 3.23656 3.30310 3.35167 3.57302 3.80516 4.33566 4.75463 4.79525 4.90420 4.99715 5.03909 5.10531 5.15141 5.36405 5.42140 5.42831 5.71208 5.81189 5.84700 5.94456 5.99139 6.05175 6.24904 6.35635 6.38180 6.40145 6.59893 6.65457 6.89397 6.90924 6.92924 7.19516 7.61113 7.74050 7.95351 8.15486 8.66041 8.90762 9.40813 10.89467 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043026 B = 0.003755 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.618890 B = 7455.517067 C = 7759.733039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.102 0.898 4 C -0.068 4.068 5 C -0.073 4.073 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.117 4.117 11 C 0.455 3.545 12 O -0.523 6.523 13 O -0.355 6.355 14 C 0.214 3.786 15 H 0.046 0.954 16 C -0.155 4.155 17 C -0.519 4.519 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.015 0.985 37 H 0.036 0.964 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 6.529 -18.029 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.120 0.880 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.132 4.132 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.138 4.138 10 C -0.135 4.135 11 C 0.298 3.702 12 O -0.413 6.413 13 O -0.271 6.271 14 C 0.162 3.838 15 H 0.064 0.936 16 C -0.212 4.212 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.034 6.122 -17.852 19.115 hybrid contribution -0.365 -0.032 0.832 0.909 sum -3.399 6.090 -17.020 18.394 Atomic orbital electron populations 1.21816 0.92403 1.02819 1.03153 1.20917 0.98269 1.00594 0.90030 0.88021 1.20502 1.02364 0.98276 0.89402 1.19904 0.94530 0.96481 0.96375 1.21133 0.96257 1.00027 0.95765 1.21137 0.99624 0.96498 0.96623 1.21120 0.94860 0.98499 1.00174 1.21131 0.96845 0.99728 0.96088 1.21122 0.99796 0.96010 0.96525 1.23323 0.77710 0.82873 0.86291 1.90592 1.36472 1.26471 1.87804 1.86480 1.69079 1.56491 1.15006 1.20626 0.92085 0.91893 0.79246 0.93624 1.22158 0.97071 1.00567 1.01441 1.21072 1.06457 1.33137 0.95077 0.91273 1.24896 0.95838 0.94683 0.98645 1.69914 1.23944 1.32841 1.26046 0.86226 0.80607 0.77980 0.81367 1.19467 1.20758 1.20719 0.90887 0.91451 0.92195 0.89919 0.90037 0.85876 0.86218 0.86396 0.86227 0.85962 0.88265 0.96566 0.94457 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.71 37.16 0.32 -1.63 16 2 C -0.08 -1.19 2.82 -91.77 -0.26 -1.45 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 4 C -0.07 -0.92 4.19 -27.88 -0.12 -1.03 16 5 C -0.07 -0.85 4.70 -104.62 -0.49 -1.34 16 6 C -0.11 -1.20 7.98 -39.58 -0.32 -1.52 16 7 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 8 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 11 C 0.46 9.51 7.23 36.00 0.26 9.77 16 12 O -0.52 -12.33 15.14 -18.76 -0.28 -12.61 16 13 O -0.35 -8.50 9.78 -39.26 -0.38 -8.89 16 14 C 0.21 5.82 2.56 -27.89 -0.07 5.74 16 15 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 16 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 17 C -0.52 -14.70 8.90 -34.44 -0.31 -15.01 16 18 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 21 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.07 0.76 6.28 -51.93 -0.33 0.44 16 27 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 29 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.12 1.17 8.05 -52.49 -0.42 0.75 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -30.98 321.23 -8.14 -39.12 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.61 Total: 1.01 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.30 Total: -14.77 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.63 Total: -24.84 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.67 Total: -21.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.98 -8.14 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.851 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds