Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46495 * 2 1 4 4 C 1.52996 * 109.47255 * 240.00165 * 2 1 3 5 5 C 1.50700 * 109.47144 * 65.00224 * 4 2 1 6 6 C 1.38244 * 119.99818 * 269.72356 * 5 4 2 7 7 C 1.38225 * 119.99769 * 179.76815 * 6 5 4 8 8 C 1.38236 * 120.00553 * 0.50663 * 7 6 5 9 9 C 1.38237 * 119.99436 * 359.74641 * 8 7 6 10 10 C 1.38232 * 120.00317 * 89.99598 * 5 4 2 11 11 C 1.50697 * 109.46796 * 119.99832 * 2 1 3 12 12 O 1.20833 * 119.99747 * 120.00770 * 11 2 1 13 13 O 1.34230 * 120.00262 * 299.72392 * 11 2 1 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 2 15 15 H 1.09000 * 109.47281 * 330.00745 * 14 13 11 16 16 C 1.53000 * 109.46662 * 90.00373 * 14 13 11 17 17 C 1.50695 * 109.47280 * 210.00118 * 14 13 11 18 18 H 1.08003 * 120.00156 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00318 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99731 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00302 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47070 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47305 * 120.00395 * 21 19 17 24 24 H 1.48495 * 109.47669 * 240.00388 * 21 19 17 25 25 H 1.08993 * 109.47452 * 300.00203 * 1 2 3 26 26 H 1.09003 * 109.46969 * 60.00096 * 1 2 3 27 27 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47051 * 184.99481 * 4 2 1 29 29 H 1.08997 * 109.46989 * 304.99822 * 4 2 1 30 30 H 1.08001 * 119.99364 * 359.97438 * 6 5 4 31 31 H 1.08004 * 120.00164 * 180.23091 * 7 6 5 32 32 H 1.07997 * 120.00305 * 179.72646 * 8 7 6 33 33 H 1.07998 * 119.99761 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00236 * 0.02562 * 10 5 4 35 35 H 1.09000 * 109.47394 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.47630 * 300.00223 * 16 14 13 37 37 H 1.09000 * 109.46969 * 60.00181 * 16 14 13 38 38 H 0.97006 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4765 6 6 0.4382 -0.2088 -3.1031 7 6 0.0704 0.5084 -4.2260 8 6 0.9104 1.4844 -4.7287 9 6 2.1160 1.7468 -4.1052 10 6 2.4814 1.0332 -2.9791 11 6 2.0323 -0.7104 1.2305 12 8 2.7270 -1.6927 1.1196 13 8 1.7126 -0.2486 2.4496 14 6 2.2364 -0.9795 3.5896 15 1 2.3497 -2.0311 3.3262 16 6 3.5979 -0.4028 3.9832 17 6 1.2827 -0.8521 4.7494 18 1 0.3735 -0.2794 4.6405 19 6 1.5702 -1.4674 5.9492 20 7 2.6771 -2.1651 6.0817 21 14 0.3877 -1.3100 7.3867 22 1 -0.7749 -0.4792 6.9825 23 1 -0.0846 -2.6592 7.7891 24 1 1.0821 -0.6671 8.5310 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1264 -0.7993 -1.2056 29 1 1.6055 -1.7197 -1.2951 30 1 -0.2159 -0.9747 -2.7132 31 1 -0.8714 0.3032 -4.7134 32 1 0.6250 2.0417 -5.6087 33 1 2.7725 2.5090 -4.4982 34 1 3.4236 1.2377 -2.4925 35 1 3.9910 -0.9511 4.8392 36 1 4.2878 -0.4949 3.1443 37 1 3.4846 0.6488 4.2466 38 1 2.8796 -2.5978 6.9260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = -100.275097 kcal Electronic energy + Delta-G solvation = -19197.721357 eV Core-core repulsion = 16196.718291 eV Total energy + Delta-G solvation = -3001.003066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51559 -40.15388 -37.78356 -36.03352 -35.31703 -32.15264 -31.74359 -31.33034 -27.71182 -27.48370 -25.58633 -23.42493 -23.13759 -21.92563 -20.77541 -18.85625 -18.47560 -17.62857 -17.25440 -16.93592 -16.39622 -16.06283 -15.85565 -15.02813 -14.93583 -14.53445 -14.19478 -13.93931 -13.86144 -13.67348 -13.32206 -13.18360 -13.08183 -12.94397 -12.82293 -12.41718 -12.26017 -12.15360 -12.14297 -11.86240 -11.75297 -11.58901 -11.19894 -10.98388 -10.61326 -9.75170 -9.57532 -8.29948 -6.46945 0.46388 0.55778 1.32611 1.41538 1.42300 1.56287 2.01680 2.40992 2.93206 3.00748 3.67111 3.81449 3.87785 4.12184 4.13806 4.22786 4.32951 4.36992 4.52495 4.55715 4.69982 4.75526 4.78474 4.81428 4.86394 4.89422 5.06934 5.15178 5.20406 5.22672 5.27039 5.47789 5.61597 5.63405 5.68405 5.77569 5.91039 6.08384 6.17674 6.58840 6.96217 7.25371 8.78114 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043026 B = 0.003755 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.618890 B = 7455.517067 C = 7759.733039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 H 0.120 0.880 4 C -0.059 4.059 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.124 4.124 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.129 4.129 11 C 0.448 3.552 12 O -0.554 6.554 13 O -0.361 6.361 14 C 0.216 3.784 15 H 0.006 0.994 16 C -0.142 4.142 17 C -0.547 4.547 18 H 0.068 0.932 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.271 1.271 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.046 0.954 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 7.993 -19.140 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 H 0.138 0.862 4 C -0.097 4.097 5 C -0.087 4.087 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.146 4.146 9 C -0.142 4.142 10 C -0.147 4.147 11 C 0.294 3.706 12 O -0.446 6.446 13 O -0.277 6.277 14 C 0.162 3.838 15 H 0.024 0.976 16 C -0.200 4.200 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.196 1.196 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.451 7.595 -18.989 20.930 hybrid contribution 0.111 -0.502 1.055 1.174 sum -4.339 7.093 -17.934 19.767 Atomic orbital electron populations 1.21805 0.90783 1.02966 1.04024 1.21062 0.99416 1.00757 0.87430 0.86231 1.20374 1.01490 0.98123 0.89678 1.19731 0.95633 0.97276 0.96093 1.21280 0.95978 1.00482 0.96344 1.21442 1.00576 0.96067 0.96083 1.21496 0.94350 0.98135 1.00610 1.21420 0.97471 0.99840 0.95513 1.21275 0.99965 0.96192 0.97291 1.24562 0.76795 0.82673 0.86617 1.90571 1.37922 1.28075 1.88017 1.86479 1.69361 1.56238 1.15641 1.20341 0.92904 0.90198 0.80324 0.97624 1.21986 0.96511 1.00616 1.00908 1.21331 1.06908 1.34171 0.96059 0.91395 1.25859 0.97547 0.93754 1.01321 1.70030 1.25473 1.33048 1.27046 0.85113 0.78375 0.78258 0.77529 1.18634 1.20103 1.19631 0.91822 0.88644 0.92478 0.91094 0.90852 0.85285 0.83997 0.83898 0.84212 0.85707 0.90064 0.95840 0.93488 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.71 71.98 0.63 -2.97 16 2 C -0.07 -2.03 2.82 -11.54 -0.03 -2.06 16 3 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 4 C -0.06 -1.59 4.19 29.85 0.13 -1.46 16 5 C -0.09 -1.92 4.70 -19.86 -0.09 -2.02 16 6 C -0.12 -2.35 7.98 22.27 0.18 -2.18 16 7 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 8 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 9 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 10 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 11 C 0.45 19.21 7.23 71.23 0.51 19.73 16 12 O -0.55 -27.19 15.14 21.94 0.33 -26.85 16 13 O -0.36 -17.73 9.78 -51.41 -0.50 -18.24 16 14 C 0.22 12.11 2.56 29.85 0.08 12.19 16 15 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 16 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 17 C -0.55 -31.50 8.90 25.60 0.23 -31.27 16 18 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 19 C 0.01 0.82 5.30 84.65 0.45 1.27 16 20 N -0.92 -53.32 11.32 21.44 0.24 -53.07 16 21 Si 0.98 43.13 29.54 68.60 2.03 45.16 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 26 H 0.09 1.96 6.28 -2.39 -0.01 1.94 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 29 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 30 H 0.13 2.24 8.05 -2.91 -0.02 2.22 16 31 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.08 4.57 6.07 -2.39 -0.01 4.56 16 36 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -67.65 321.23 6.76 -60.89 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.03 Total: 15.36 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.63 Total: -23.25 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.24 Total: -53.07 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.17 Total: -45.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.65 6.76 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.386 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds