Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47531 * 2 1 4 4 C 1.50703 * 109.47158 * 120.00573 * 2 1 3 5 5 H 1.07997 * 120.00033 * 119.99267 * 4 2 1 6 6 C 1.37884 * 119.99439 * 299.99830 * 4 2 1 7 7 N 1.31506 * 120.00081 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99506 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47262 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46942 * 119.99967 * 8 6 4 11 11 H 1.48502 * 109.47126 * 240.00140 * 8 6 4 12 12 O 1.45203 * 109.47085 * 239.99994 * 2 1 3 13 13 C 1.34232 * 116.99936 * 90.00019 * 12 2 1 14 14 O 1.20831 * 119.99523 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00097 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46754 * 64.62181 * 15 13 12 17 17 C 1.52994 * 109.47241 * 304.62078 * 15 13 12 18 18 C 1.50707 * 109.46961 * 184.61596 * 15 13 12 19 19 C 1.38230 * 120.00038 * 293.86371 * 18 15 13 20 20 C 1.38236 * 119.99959 * 180.32190 * 19 18 15 21 21 C 1.38235 * 119.99765 * 359.95674 * 20 19 18 22 22 C 1.38235 * 120.00273 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.99542 * 114.13870 * 18 15 13 24 24 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46867 * 300.00017 * 1 2 3 26 26 H 1.09007 * 109.46534 * 59.99525 * 1 2 3 27 27 H 0.96999 * 119.99737 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46777 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.47028 * 299.99440 * 16 15 13 30 30 H 1.09001 * 109.47402 * 59.99943 * 16 15 13 31 31 H 1.09000 * 109.46967 * 299.99310 * 17 15 13 32 32 H 1.08998 * 109.47482 * 59.99984 * 17 15 13 33 33 H 1.09005 * 109.46962 * 180.02562 * 17 15 13 34 34 H 1.08007 * 120.00560 * 0.27804 * 19 18 15 35 35 H 1.08003 * 120.00284 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99985 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.00077 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00605 * 359.72414 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1472 -0.1860 4.8160 11 1 1.1678 -1.5869 4.8164 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2519 -2.2503 15 6 2.7193 -0.5770 -3.5492 16 6 1.6715 -1.5615 -4.0725 17 6 4.0227 -1.3246 -3.2612 18 6 2.9695 0.4882 -4.5855 19 6 1.9113 1.2124 -5.1018 20 6 2.1400 2.1848 -6.0573 21 6 3.4271 2.4337 -6.4957 22 6 4.4854 1.7098 -5.9792 23 6 4.2566 0.7372 -5.0239 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.7090 1.1612 3.4844 28 1 2.0346 -2.0248 -4.9899 29 1 1.4906 -2.3319 -3.3230 30 1 0.7429 -1.0288 -4.2776 31 1 4.7692 -0.6231 -2.8885 32 1 3.8418 -2.0950 -2.5117 33 1 4.3862 -1.7878 -4.1786 34 1 0.9056 1.0179 -4.7592 35 1 1.3131 2.7504 -6.4610 36 1 3.6058 3.1932 -7.2425 37 1 5.4909 1.9040 -6.3221 38 1 5.0834 0.1714 -4.6206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -74.466818 kcal Electronic energy + Delta-G solvation = -19913.884631 eV Core-core repulsion = 16914.000696 eV Total energy + Delta-G solvation = -2999.883935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34330 -38.71026 -35.86171 -35.01938 -33.20639 -30.95363 -29.86974 -29.28168 -27.30472 -25.31989 -24.13779 -22.58741 -22.10447 -20.58375 -18.94535 -17.15936 -16.61688 -16.39440 -15.59031 -15.16199 -14.81066 -14.58922 -14.31950 -13.91078 -13.38319 -13.23784 -12.74283 -12.50227 -12.31103 -12.01759 -11.96659 -11.67208 -11.59924 -11.42680 -11.18116 -11.06080 -10.82908 -10.73499 -10.58472 -10.34623 -10.27631 -9.53625 -9.41656 -8.88209 -8.77438 -8.62337 -8.48825 -6.17917 -4.24641 1.43234 1.53924 3.04197 3.23586 3.30217 3.34934 3.59612 4.04826 4.35172 4.59041 4.86758 5.05815 5.09789 5.15164 5.18343 5.23632 5.52477 5.57179 5.63692 5.73174 5.87213 5.90105 6.02289 6.06918 6.14662 6.26750 6.30593 6.58228 6.60867 6.65247 6.75004 6.89269 6.92874 7.09910 7.20183 7.61131 7.74068 7.95666 8.15498 8.67043 8.91367 9.40936 10.89630 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.004822 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.380023 B = 5805.553956 C = 5965.640782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.352 6.352 13 C 0.461 3.539 14 O -0.513 6.513 15 C -0.019 4.019 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.060 4.060 19 C -0.087 4.087 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -2.214 -15.975 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.268 6.268 13 C 0.302 3.698 14 O -0.402 6.402 15 C -0.020 4.020 16 C -0.193 4.193 17 C -0.199 4.199 18 C -0.061 4.061 19 C -0.105 4.105 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.132 4.132 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.913 -1.750 -15.756 16.329 hybrid contribution 0.136 -0.073 0.963 0.975 sum 4.049 -1.823 -14.794 15.446 Atomic orbital electron populations 1.22153 0.97638 1.00034 1.01329 1.20626 0.91333 0.93917 0.77907 0.93714 1.21064 1.32354 1.13398 0.88879 0.91272 1.24890 0.94956 0.95092 0.99072 1.69909 1.36187 1.22594 1.24031 0.86235 0.78640 0.79502 0.81859 1.19462 1.20764 1.20723 1.86467 1.75705 1.43512 1.21129 1.23060 0.74953 0.85878 0.85870 1.90610 1.48292 1.16792 1.84517 1.19370 0.98277 0.94686 0.89712 1.21847 0.97287 0.98429 1.01736 1.21914 0.94770 1.00618 1.02554 1.19401 0.93741 0.96698 0.96210 1.20965 0.98933 0.95137 0.95451 1.21084 0.96991 0.98128 0.97882 1.21103 0.92996 0.99731 1.00339 1.21062 0.98814 0.96667 0.97800 1.21152 0.96300 0.98267 0.97440 0.94452 0.88298 0.96630 0.92479 0.91352 0.90548 0.92105 0.91840 0.90362 0.91386 0.86284 0.86237 0.86430 0.86252 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.33 37.16 0.35 -3.60 16 2 C 0.21 5.83 2.56 -27.88 -0.07 5.76 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 O -0.35 -8.39 9.61 -39.26 -0.38 -8.77 16 13 C 0.46 9.83 6.45 36.00 0.23 10.06 16 14 O -0.51 -12.47 14.55 -18.75 -0.27 -12.74 16 15 C -0.02 -0.30 0.80 -156.81 -0.13 -0.43 16 16 C -0.14 -1.81 8.19 37.16 0.30 -1.51 16 17 C -0.14 -1.92 7.04 37.15 0.26 -1.66 16 18 C -0.06 -0.92 4.33 -104.62 -0.45 -1.37 16 19 C -0.09 -1.31 8.16 -39.59 -0.32 -1.63 16 20 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.11 -1.53 8.99 -39.58 -0.36 -1.89 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.81 7.08 -51.93 -0.37 0.44 16 31 H 0.06 0.88 7.23 -51.93 -0.38 0.50 16 32 H 0.08 1.10 8.03 -51.93 -0.42 0.69 16 33 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 34 H 0.12 1.80 7.23 -52.48 -0.38 1.42 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.47 5.91 -52.49 -0.31 1.16 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -31.42 315.89 -7.51 -38.92 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.45 Total: 1.92 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.78 Total: -15.35 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.63 Total: -24.85 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.65 Total: -21.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.42 -7.51 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.544 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds