Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47531 * 2 1 4 4 C 1.50703 * 109.47158 * 120.00573 * 2 1 3 5 5 H 1.07997 * 120.00033 * 119.99267 * 4 2 1 6 6 C 1.37884 * 119.99439 * 299.99830 * 4 2 1 7 7 N 1.31506 * 120.00081 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99506 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47262 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46942 * 119.99967 * 8 6 4 11 11 H 1.48502 * 109.47126 * 240.00140 * 8 6 4 12 12 O 1.45203 * 109.47085 * 239.99994 * 2 1 3 13 13 C 1.34232 * 116.99936 * 90.00019 * 12 2 1 14 14 O 1.20831 * 119.99523 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00097 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46754 * 64.62181 * 15 13 12 17 17 C 1.52994 * 109.47241 * 304.62078 * 15 13 12 18 18 C 1.50707 * 109.46961 * 184.61596 * 15 13 12 19 19 C 1.38230 * 120.00038 * 293.86371 * 18 15 13 20 20 C 1.38236 * 119.99959 * 180.32190 * 19 18 15 21 21 C 1.38235 * 119.99765 * 359.95674 * 20 19 18 22 22 C 1.38235 * 120.00273 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.99542 * 114.13870 * 18 15 13 24 24 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46867 * 300.00017 * 1 2 3 26 26 H 1.09007 * 109.46534 * 59.99525 * 1 2 3 27 27 H 0.96999 * 119.99737 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46777 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.47028 * 299.99440 * 16 15 13 30 30 H 1.09001 * 109.47402 * 59.99943 * 16 15 13 31 31 H 1.09000 * 109.46967 * 299.99310 * 17 15 13 32 32 H 1.08998 * 109.47482 * 59.99984 * 17 15 13 33 33 H 1.09005 * 109.46962 * 180.02562 * 17 15 13 34 34 H 1.08007 * 120.00560 * 0.27804 * 19 18 15 35 35 H 1.08003 * 120.00284 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99985 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.00077 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00605 * 359.72414 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1472 -0.1860 4.8160 11 1 1.1678 -1.5869 4.8164 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2519 -2.2503 15 6 2.7193 -0.5770 -3.5492 16 6 1.6715 -1.5615 -4.0725 17 6 4.0227 -1.3246 -3.2612 18 6 2.9695 0.4882 -4.5855 19 6 1.9113 1.2124 -5.1018 20 6 2.1400 2.1848 -6.0573 21 6 3.4271 2.4337 -6.4957 22 6 4.4854 1.7098 -5.9792 23 6 4.2566 0.7372 -5.0239 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.7090 1.1612 3.4844 28 1 2.0346 -2.0248 -4.9899 29 1 1.4906 -2.3319 -3.3230 30 1 0.7429 -1.0288 -4.2776 31 1 4.7692 -0.6231 -2.8885 32 1 3.8418 -2.0950 -2.5117 33 1 4.3862 -1.7878 -4.1786 34 1 0.9056 1.0179 -4.7592 35 1 1.3131 2.7504 -6.4610 36 1 3.6058 3.1932 -7.2425 37 1 5.4909 1.9040 -6.3221 38 1 5.0834 0.1714 -4.6206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -90.816402 kcal Electronic energy + Delta-G solvation = -19914.593603 eV Core-core repulsion = 16914.000696 eV Total energy + Delta-G solvation = -3000.592906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83649 -40.05399 -37.61159 -36.38675 -35.28282 -31.95086 -31.72393 -30.57402 -28.37092 -27.48061 -25.56584 -23.99935 -23.14748 -22.31561 -20.49846 -18.84160 -18.23025 -17.93944 -17.23701 -16.84019 -16.46557 -15.82826 -15.56010 -15.01652 -14.98420 -14.41709 -14.28051 -14.06923 -13.75130 -13.41219 -13.29092 -13.13296 -13.02940 -12.92582 -12.82455 -12.65220 -12.48199 -12.40788 -12.14645 -11.81677 -11.64558 -11.57137 -11.12204 -10.97892 -10.61481 -9.78062 -9.66556 -8.29984 -6.47033 0.39153 0.53441 1.34095 1.41296 1.42118 1.56101 2.02620 2.40624 2.95729 3.00968 3.42607 3.75425 3.92245 4.02120 4.17120 4.18898 4.29051 4.49820 4.58870 4.65206 4.72995 4.74566 4.78037 4.80513 4.81974 4.89600 5.06695 5.12347 5.16410 5.21610 5.24271 5.47371 5.58970 5.60826 5.62706 5.70216 5.90498 6.07505 6.13708 6.59115 6.97572 7.25439 8.78177 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.004822 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.380023 B = 5805.553956 C = 5965.640782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.271 1.271 12 O -0.356 6.356 13 C 0.453 3.547 14 O -0.549 6.549 15 C -0.012 4.012 16 C -0.133 4.133 17 C -0.139 4.139 18 C -0.083 4.083 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.123 4.123 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.020 0.980 27 H 0.271 0.729 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -3.152 -17.122 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.019 0.981 4 C -0.583 4.583 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.196 1.196 12 O -0.272 6.272 13 C 0.297 3.703 14 O -0.440 6.440 15 C -0.013 4.013 16 C -0.190 4.190 17 C -0.196 4.196 18 C -0.083 4.083 19 C -0.129 4.129 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.382 -2.697 -16.929 17.968 hybrid contribution -0.314 0.324 1.219 1.300 sum 5.068 -2.372 -15.710 16.677 Atomic orbital electron populations 1.21970 0.96858 1.00392 1.00608 1.20318 0.91949 0.91890 0.79443 0.98069 1.21323 1.33309 1.13835 0.89827 0.91285 1.25859 0.94696 0.95644 1.02229 1.70031 1.36736 1.23760 1.25152 0.85119 0.78374 0.78441 0.77381 1.18518 1.20178 1.19628 1.86467 1.76021 1.43490 1.21203 1.24379 0.73678 0.85689 0.86541 1.90580 1.49789 1.18539 1.85053 1.19518 0.99736 0.95412 0.86678 1.21875 0.96527 0.97638 1.02919 1.21957 0.93334 1.00051 1.04232 1.19466 0.94779 0.97359 0.96721 1.21045 0.98484 0.96572 0.96834 1.21374 0.98515 0.97683 0.97421 1.21519 0.92292 0.99855 1.00314 1.21484 1.00423 0.95609 0.96826 1.21432 0.95866 0.98915 0.97814 0.93375 0.90142 0.96128 0.92019 0.88050 0.90968 0.92744 0.92465 0.91147 0.87537 0.87771 0.84507 0.83353 0.83164 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.45 9.33 71.98 0.67 -6.78 16 2 C 0.22 12.28 2.56 29.85 0.08 12.36 16 3 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 4 C -0.55 -31.40 8.90 25.60 0.23 -31.17 16 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 8 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 O -0.36 -17.53 9.61 -51.43 -0.49 -18.03 16 13 C 0.45 19.98 6.45 71.24 0.46 20.44 16 14 O -0.55 -27.99 14.55 21.95 0.32 -27.67 16 15 C -0.01 -0.39 0.80 -53.67 -0.04 -0.43 16 16 C -0.13 -3.44 8.19 71.98 0.59 -2.85 16 17 C -0.14 -3.58 7.04 71.98 0.51 -3.07 16 18 C -0.08 -2.48 4.33 -19.87 -0.09 -2.57 16 19 C -0.11 -3.36 8.16 22.27 0.18 -3.18 16 20 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 21 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 23 C -0.12 -3.05 8.99 22.27 0.20 -2.85 16 24 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 4.56 6.07 -2.39 -0.01 4.55 16 26 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.46 7.08 -2.39 -0.02 1.44 16 31 H 0.06 1.53 7.23 -2.39 -0.02 1.51 16 32 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 33 H 0.11 1.92 7.79 -2.38 -0.02 1.90 16 34 H 0.10 3.32 7.23 -2.91 -0.02 3.30 16 35 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 2.96 5.91 -2.91 -0.02 2.94 16 Total: -1.00 -70.05 315.89 7.04 -63.01 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.04 Total: 17.49 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.90 Total: -26.61 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.24 Total: -53.38 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.17 Total: -45.70 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.05 7.04 -63.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.806 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds