Wall clock time and date at job start Mon Mar 30 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 C 1.38365 * 119.85212 * 299.72516 * 4 2 1 6 6 C 1.37940 * 120.14935 * 179.76607 * 5 4 2 7 7 C 1.39629 * 119.85038 * 0.50899 * 6 5 4 8 8 C 1.47726 * 120.14879 * 179.76682 * 7 6 5 9 9 O 1.21471 * 119.99692 * 179.97438 * 8 7 6 10 10 O 1.34710 * 120.00262 * 359.97438 * 8 7 6 11 11 C 1.45201 * 116.99682 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47441 * 329.99784 * 11 10 8 13 13 C 1.52992 * 109.46894 * 90.00429 * 11 10 8 14 14 C 1.50700 * 109.46884 * 209.99941 * 11 10 8 15 15 H 1.08005 * 119.99839 * 0.02562 * 14 11 10 16 16 C 1.37868 * 120.00111 * 180.02562 * 14 11 10 17 17 N 1.31520 * 120.00418 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 120.00059 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.46918 * 89.99955 * 18 16 14 20 20 H 1.48504 * 109.47223 * 210.00328 * 18 16 14 21 21 H 1.48501 * 109.46954 * 329.99815 * 18 16 14 22 22 C 1.39626 * 119.69782 * 359.74367 * 7 6 5 23 23 C 1.37947 * 119.85127 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 27 27 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 28 28 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 30 30 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 31 31 H 1.08005 * 119.92007 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.07433 * 180.23738 * 6 5 4 33 33 H 1.09002 * 109.47446 * 59.99714 * 13 11 10 34 34 H 1.09003 * 109.47317 * 179.97438 * 13 11 10 35 35 H 1.09005 * 109.47066 * 299.99610 * 13 11 10 36 36 H 0.97000 * 120.00611 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.07507 * 179.97438 * 22 7 6 38 38 H 1.07997 * 119.92574 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7007 -0.2315 2.4857 6 6 2.1531 -0.8797 3.6162 7 6 2.9560 -2.0152 3.4919 8 6 3.4484 -2.7115 4.6982 9 8 4.1463 -3.6994 4.5868 10 8 3.1233 -2.2509 5.9216 11 6 3.6420 -2.9854 7.0617 12 1 3.7549 -4.0364 6.7960 13 6 5.0025 -2.4115 7.4620 14 6 2.6839 -2.8599 8.2181 15 1 1.7758 -2.2858 8.1072 16 6 2.9666 -3.4778 9.4177 17 7 2.1302 -3.3687 10.4269 18 14 4.5376 -4.4701 9.6099 19 1 5.6265 -3.5842 10.0941 20 1 4.3158 -5.5633 10.5903 21 1 4.9191 -5.0519 8.2979 22 6 3.2910 -2.4899 2.2222 23 6 2.8279 -1.8349 1.1000 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.0829 0.6493 2.5804 32 1 1.8904 -0.5071 4.5953 33 1 4.8895 -1.3604 7.7278 34 1 5.3917 -2.9625 8.3182 35 1 5.6955 -2.5022 6.6255 36 1 2.3289 -3.8038 11.2708 37 1 3.9120 -3.3674 2.1190 38 1 3.0866 -2.2007 0.1174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:07 Heat of formation + Delta-G solvation = -75.508605 kcal Electronic energy + Delta-G solvation = -19134.161161 eV Core-core repulsion = 16134.232050 eV Total energy + Delta-G solvation = -2999.929110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12624 -38.98895 -36.04952 -35.30184 -33.20462 -31.16847 -30.68843 -29.90667 -27.39153 -25.32070 -24.63809 -22.68244 -21.97998 -20.39097 -19.69208 -17.78669 -16.64124 -16.48408 -15.74104 -15.27822 -15.07903 -14.72609 -14.31069 -13.98586 -13.77609 -13.40765 -13.20473 -12.92859 -12.63561 -12.55357 -12.33792 -12.22427 -11.80468 -11.53903 -11.45422 -11.35581 -11.00970 -10.89739 -10.78827 -10.23611 -10.02374 -9.77977 -9.61041 -9.12981 -8.98386 -8.78234 -8.68204 -6.23020 -4.25489 0.84469 1.38590 2.95123 3.18705 3.31006 3.33376 3.45784 3.91236 4.26527 4.41198 4.56690 4.93525 4.94994 4.96876 5.08143 5.16822 5.24627 5.37193 5.39604 5.48119 5.57809 5.63373 5.71267 5.88452 5.97033 5.98292 6.00440 6.14944 6.25029 6.32615 6.38875 6.47436 6.52639 6.61837 6.87269 7.01847 7.34394 7.49993 8.21759 8.58234 8.83546 9.34002 10.89044 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039863 B = 0.004050 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.229318 B = 6912.154402 C = 7249.002341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.053 4.053 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.119 4.119 8 C 0.496 3.504 9 O -0.520 6.520 10 O -0.336 6.336 11 C 0.191 3.809 12 H 0.047 0.953 13 C -0.170 4.170 14 C -0.525 4.525 15 H 0.087 0.913 16 C 0.080 3.920 17 N -0.888 5.888 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.262 1.262 22 C -0.057 4.057 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.269 0.731 37 H 0.135 0.865 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 7.613 -20.368 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.053 4.053 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.120 4.120 8 C 0.341 3.659 9 O -0.412 6.412 10 O -0.251 6.251 11 C 0.137 3.863 12 H 0.064 0.936 13 C -0.227 4.227 14 C -0.562 4.562 15 H 0.105 0.895 16 C -0.123 4.123 17 N -0.525 5.525 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.075 4.075 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.171 7.275 -20.131 21.406 hybrid contribution 0.947 -0.675 0.410 1.233 sum 0.776 6.600 -19.720 20.810 Atomic orbital electron populations 1.21870 0.94067 1.02247 1.02080 1.20190 0.96187 0.96164 0.95252 1.21867 1.01346 0.94940 1.02080 1.20109 0.95626 0.94737 0.94841 1.20958 1.01570 1.00789 0.91500 1.21595 0.93223 0.92838 0.99898 1.19358 1.02886 0.98195 0.91568 1.21151 0.77614 0.82151 0.84964 1.90753 1.36549 1.26001 1.87871 1.86558 1.68779 1.55588 1.14212 1.20948 0.92036 0.91935 0.81355 0.93564 1.22525 0.97827 1.02431 0.99931 1.20775 1.07254 1.34376 0.93843 0.89459 1.24723 0.96868 0.95560 0.95176 1.69837 1.36232 1.43439 1.03017 0.86970 0.83536 0.80037 0.78641 1.19969 1.21657 1.18693 1.21262 0.96884 0.98761 0.90629 1.20951 0.99597 0.96242 0.98380 0.92353 0.92379 0.92175 0.90349 0.92435 0.92357 0.92183 0.85439 0.83976 0.91737 0.92498 0.94385 0.92053 0.84680 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.01 37.16 0.33 -0.73 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.15 -1.03 9.00 37.16 0.33 -0.70 16 4 C -0.05 -0.56 4.79 -104.52 -0.50 -1.06 16 5 C -0.13 -1.51 8.69 -39.64 -0.34 -1.85 16 6 C -0.06 -0.83 9.62 -39.17 -0.38 -1.21 16 7 C -0.12 -1.98 5.87 -104.98 -0.62 -2.60 16 8 C 0.50 10.48 7.87 34.61 0.27 10.76 16 9 O -0.52 -12.05 15.61 -19.24 -0.30 -12.35 16 10 O -0.34 -7.86 9.12 -40.52 -0.37 -8.23 16 11 C 0.19 4.91 2.15 -27.89 -0.06 4.85 16 12 H 0.05 1.26 6.22 -51.93 -0.32 0.93 16 13 C -0.17 -3.94 9.03 37.15 0.34 -3.61 16 14 C -0.52 -15.16 9.48 -34.44 -0.33 -15.49 16 15 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 16 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 17 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.88 21.82 24.37 -169.99 -4.14 17.68 16 19 H -0.27 -6.49 6.87 56.52 0.39 -6.10 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 22 C -0.06 -0.81 9.60 -39.17 -0.38 -1.18 16 23 C -0.13 -1.50 9.65 -39.64 -0.38 -1.89 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 27 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 7.36 -51.93 -0.38 0.05 16 31 H 0.13 1.20 7.08 -52.48 -0.37 0.82 16 32 H 0.14 2.09 7.61 -52.49 -0.40 1.69 16 33 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.14 1.87 7.65 -52.49 -0.40 1.47 16 38 H 0.13 1.09 7.94 -52.49 -0.42 0.68 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -31.74 314.45 -6.78 -38.53 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.40 Total: -1.08 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -2.09 Total: -13.25 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.04 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.67 Total: -20.58 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.74 -6.78 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.983 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds