Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 C 1.38365 * 119.85212 * 299.72516 * 4 2 1 6 6 C 1.37940 * 120.14935 * 179.76607 * 5 4 2 7 7 C 1.39629 * 119.85038 * 0.50899 * 6 5 4 8 8 C 1.47726 * 120.14879 * 179.76682 * 7 6 5 9 9 O 1.21471 * 119.99692 * 179.97438 * 8 7 6 10 10 O 1.34710 * 120.00262 * 359.97438 * 8 7 6 11 11 C 1.45201 * 116.99682 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47441 * 329.99784 * 11 10 8 13 13 C 1.52992 * 109.46894 * 90.00429 * 11 10 8 14 14 C 1.50700 * 109.46884 * 209.99941 * 11 10 8 15 15 H 1.08005 * 119.99839 * 0.02562 * 14 11 10 16 16 C 1.37868 * 120.00111 * 180.02562 * 14 11 10 17 17 N 1.31520 * 120.00418 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 120.00059 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.46918 * 89.99955 * 18 16 14 20 20 H 1.48504 * 109.47223 * 210.00328 * 18 16 14 21 21 H 1.48501 * 109.46954 * 329.99815 * 18 16 14 22 22 C 1.39626 * 119.69782 * 359.74367 * 7 6 5 23 23 C 1.37947 * 119.85127 * 0.02562 * 22 7 6 24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 27 27 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 28 28 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 30 30 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 31 31 H 1.08005 * 119.92007 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.07433 * 180.23738 * 6 5 4 33 33 H 1.09002 * 109.47446 * 59.99714 * 13 11 10 34 34 H 1.09003 * 109.47317 * 179.97438 * 13 11 10 35 35 H 1.09005 * 109.47066 * 299.99610 * 13 11 10 36 36 H 0.97000 * 120.00611 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.07507 * 179.97438 * 22 7 6 38 38 H 1.07997 * 119.92574 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7007 -0.2315 2.4857 6 6 2.1531 -0.8797 3.6162 7 6 2.9560 -2.0152 3.4919 8 6 3.4484 -2.7115 4.6982 9 8 4.1463 -3.6994 4.5868 10 8 3.1233 -2.2509 5.9216 11 6 3.6420 -2.9854 7.0617 12 1 3.7549 -4.0364 6.7960 13 6 5.0025 -2.4115 7.4620 14 6 2.6839 -2.8599 8.2181 15 1 1.7758 -2.2858 8.1072 16 6 2.9666 -3.4778 9.4177 17 7 2.1302 -3.3687 10.4269 18 14 4.5376 -4.4701 9.6099 19 1 5.6265 -3.5842 10.0941 20 1 4.3158 -5.5633 10.5903 21 1 4.9191 -5.0519 8.2979 22 6 3.2910 -2.4899 2.2222 23 6 2.8279 -1.8349 1.1000 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.0829 0.6493 2.5804 32 1 1.8904 -0.5071 4.5953 33 1 4.8895 -1.3604 7.7278 34 1 5.3917 -2.9625 8.3182 35 1 5.6955 -2.5022 6.6255 36 1 2.3289 -3.8038 11.2708 37 1 3.9120 -3.3674 2.1190 38 1 3.0866 -2.2007 0.1174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = -93.373103 kcal Electronic energy + Delta-G solvation = -19134.935823 eV Core-core repulsion = 16134.232050 eV Total energy + Delta-G solvation = -3000.703773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59992 -40.23055 -37.76192 -36.23303 -35.31410 -32.83276 -32.00653 -31.04289 -27.92141 -27.40017 -25.91987 -23.72593 -23.50974 -21.82798 -20.82971 -19.48422 -18.54480 -18.13745 -17.17730 -16.82191 -16.38876 -16.04827 -15.48467 -15.08623 -14.86699 -14.56760 -14.47264 -14.36689 -14.26332 -13.89550 -13.74025 -13.39065 -13.27048 -12.89445 -12.85748 -12.32491 -12.25854 -11.98729 -11.90907 -11.74363 -11.69996 -11.51443 -11.41852 -11.26196 -10.86244 -10.00252 -9.81848 -8.47118 -6.56477 -0.33429 0.37476 1.21747 1.29592 1.39301 1.51987 1.83410 2.17765 2.75740 2.85427 3.56902 3.78452 3.78750 3.98936 4.15578 4.20101 4.35182 4.35509 4.38239 4.44186 4.51868 4.52873 4.68198 4.86683 4.87918 4.97323 5.04344 5.05748 5.13041 5.16928 5.28950 5.31406 5.35963 5.38585 5.45057 5.57805 5.64098 5.88361 6.09487 6.46834 6.79674 7.08222 8.68825 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039863 B = 0.004050 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.229318 B = 6912.154402 C = 7249.002341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.125 4.125 6 C -0.067 4.067 7 C -0.151 4.151 8 C 0.493 3.507 9 O -0.548 6.548 10 O -0.347 6.347 11 C 0.192 3.808 12 H 0.030 0.970 13 C -0.163 4.163 14 C -0.541 4.541 15 H 0.047 0.953 16 C 0.032 3.968 17 N -0.928 5.928 18 Si 0.940 3.060 19 H -0.249 1.249 20 H -0.281 1.281 21 H -0.260 1.260 22 C -0.061 4.061 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.276 0.724 37 H 0.133 0.867 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 8.357 -22.957 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.039 4.039 5 C -0.143 4.143 6 C -0.085 4.085 7 C -0.152 4.152 8 C 0.340 3.660 9 O -0.441 6.441 10 O -0.263 6.263 11 C 0.138 3.862 12 H 0.048 0.952 13 C -0.220 4.220 14 C -0.579 4.579 15 H 0.066 0.934 16 C -0.168 4.168 17 N -0.566 5.566 18 Si 0.765 3.235 19 H -0.174 1.174 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.079 4.079 23 C -0.143 4.143 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.678 8.041 -22.735 24.125 hybrid contribution 0.528 -0.818 1.063 1.442 sum 1.207 7.223 -21.671 22.875 Atomic orbital electron populations 1.21887 0.93437 1.02142 1.02887 1.20286 0.96578 0.96496 0.94173 1.21880 1.01147 0.94348 1.02891 1.20553 0.93727 0.93939 0.95638 1.21205 1.01096 1.01066 0.90929 1.21576 0.93585 0.92743 1.00635 1.19257 1.05745 0.99786 0.90411 1.21977 0.76948 0.82009 0.85079 1.90713 1.38068 1.27336 1.88016 1.86549 1.69335 1.55533 1.14913 1.20678 0.92643 0.91631 0.81240 0.95218 1.22412 0.96377 1.02650 1.00609 1.20920 1.06929 1.34329 0.95691 0.93423 1.25550 1.00371 0.96360 0.94514 1.69951 1.38324 1.44553 1.03806 0.85983 0.79736 0.78922 0.78855 1.17371 1.20717 1.18420 1.21365 0.97103 0.99037 0.90430 1.21315 0.98495 0.95735 0.98772 0.90619 0.92956 0.92435 0.88606 0.92788 0.90670 0.92386 0.83034 0.85232 0.91002 0.92335 0.92558 0.91422 0.84918 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.01 71.98 0.65 -0.97 16 2 C -0.06 -0.68 3.09 -11.54 -0.04 -0.71 16 3 C -0.15 -1.54 9.00 71.98 0.65 -0.89 16 4 C -0.04 -0.70 4.79 -19.80 -0.09 -0.79 16 5 C -0.13 -2.67 8.69 22.23 0.19 -2.48 16 6 C -0.07 -1.96 9.62 22.54 0.22 -1.74 16 7 C -0.15 -5.11 5.87 -20.10 -0.12 -5.23 16 8 C 0.49 21.53 7.87 70.33 0.55 22.08 16 9 O -0.55 -26.08 15.61 19.93 0.31 -25.77 16 10 O -0.35 -16.96 9.12 -56.20 -0.51 -17.47 16 11 C 0.19 10.14 2.15 29.85 0.06 10.21 16 12 H 0.03 1.66 6.22 -2.39 -0.01 1.65 16 13 C -0.16 -7.49 9.03 71.98 0.65 -6.85 16 14 C -0.54 -32.53 9.48 25.60 0.24 -32.29 16 15 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 16 C 0.03 1.89 5.45 84.65 0.46 2.35 16 17 N -0.93 -57.32 13.96 21.44 0.30 -57.02 16 18 Si 0.94 44.84 24.37 68.60 1.67 46.51 16 19 H -0.25 -10.88 6.87 99.48 0.68 -10.20 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 22 C -0.06 -1.67 9.60 22.54 0.22 -1.46 16 23 C -0.13 -2.47 9.65 22.23 0.21 -2.26 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.67 7.39 -2.38 -0.02 0.66 16 27 H 0.10 0.88 7.87 -2.39 -0.02 0.86 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.64 7.36 -2.39 -0.02 0.63 16 31 H 0.15 2.47 7.08 -2.91 -0.02 2.45 16 32 H 0.13 4.01 7.61 -2.91 -0.02 3.99 16 33 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.06 2.64 3.27 -2.39 -0.01 2.63 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.13 3.63 7.65 -2.91 -0.02 3.61 16 38 H 0.16 2.08 7.94 -2.91 -0.02 2.05 16 Total: -1.00 -70.97 314.45 6.59 -64.38 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.96 Total: 10.41 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.86 Total: -21.03 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.30 Total: -57.02 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.20 Total: -43.24 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal Total: -70.97 6.59 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.997 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds