Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99994 * 2 1 3 5 5 C 1.38373 * 119.84634 * 119.99346 * 4 2 1 6 6 C 1.37946 * 120.14556 * 179.97438 * 5 4 2 7 7 C 1.39618 * 119.85044 * 0.03093 * 6 5 4 8 8 C 1.47727 * 120.15165 * 179.97438 * 7 6 5 9 9 O 1.21471 * 119.99592 * 0.27660 * 8 7 6 10 10 O 1.34713 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00305 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.46770 * 30.00070 * 11 10 8 13 13 C 1.53001 * 109.46784 * 270.00320 * 11 10 8 14 14 C 1.50695 * 109.47198 * 150.00300 * 11 10 8 15 15 H 1.08003 * 119.99832 * 5.46312 * 14 11 10 16 16 C 1.37870 * 120.00110 * 185.46125 * 14 11 10 17 17 N 1.31516 * 119.99938 * 9.55174 * 16 14 11 18 18 Si 1.86803 * 120.00166 * 189.54988 * 16 14 11 19 19 H 1.48506 * 109.46992 * 84.99607 * 18 16 14 20 20 H 1.48499 * 109.47166 * 204.99433 * 18 16 14 21 21 H 1.48496 * 109.47130 * 324.99655 * 18 16 14 22 22 C 1.39630 * 119.70140 * 0.24688 * 7 6 5 23 23 C 1.37941 * 119.84763 * 359.47481 * 22 7 6 24 24 H 1.09002 * 109.47026 * 300.00692 * 1 2 3 25 25 H 1.09006 * 109.47309 * 59.99714 * 1 2 3 26 26 H 1.08997 * 109.47650 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46689 * 239.99702 * 2 1 3 28 28 H 1.09008 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46927 * 299.99633 * 3 2 1 30 30 H 1.08999 * 109.47480 * 60.00186 * 3 2 1 31 31 H 1.07995 * 119.92677 * 0.02619 * 5 4 2 32 32 H 1.08003 * 120.06958 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47148 * 63.66915 * 13 11 10 34 34 H 1.09010 * 109.46544 * 183.66394 * 13 11 10 35 35 H 1.09000 * 109.47407 * 303.65981 * 13 11 10 36 36 H 0.97007 * 119.99975 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.07620 * 179.72017 * 22 7 6 38 38 H 1.07998 * 119.92777 * 180.27626 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8275 -1.8353 1.0998 6 6 3.2912 -2.4900 2.2220 7 6 2.9558 -2.0157 3.4916 8 6 3.4482 -2.7121 4.6978 9 8 4.1507 -3.6968 4.5863 10 8 3.1232 -2.2516 5.9213 11 6 3.6428 -2.9854 7.0614 12 1 4.5956 -3.4430 6.7953 13 6 2.6475 -4.0761 7.4624 14 6 3.8450 -2.0402 8.2175 15 1 3.5251 -1.0118 8.1365 16 6 4.4384 -2.4882 9.3786 17 7 4.9961 -3.6786 9.4151 18 14 4.4501 -1.4042 10.8999 19 1 3.1798 -1.5862 11.6472 20 1 5.5938 -1.7824 11.7683 21 1 4.5861 0.0176 10.4936 22 6 2.1482 -0.8835 3.6161 23 6 1.6961 -0.2350 2.4857 24 1 -0.3633 0.5140 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.0864 -2.2009 0.1172 32 1 3.9121 -3.3676 2.1186 33 1 2.5507 -4.7961 6.6499 34 1 3.0066 -4.5843 8.3574 35 1 1.6764 -3.6249 7.6658 36 1 5.4132 -3.9940 10.2321 37 1 1.8813 -0.5140 4.5952 38 1 1.0751 0.6434 2.5805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -86.512813 kcal Electronic energy + Delta-G solvation = -19066.522555 eV Core-core repulsion = 16066.116266 eV Total energy + Delta-G solvation = -3000.406289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98994 -38.82462 -35.84740 -35.20226 -33.20239 -31.03732 -30.28133 -29.38825 -27.36814 -25.29844 -24.54268 -22.61465 -21.86459 -20.33695 -19.58407 -17.54676 -16.60509 -16.23573 -15.43779 -15.11761 -14.93103 -14.56212 -14.30319 -13.93054 -13.73494 -13.37663 -13.17008 -12.63463 -12.59493 -12.35399 -12.07088 -11.87092 -11.40903 -11.39106 -11.24131 -11.05822 -10.94970 -10.81680 -10.74169 -10.44571 -10.30848 -9.69780 -9.51308 -8.94336 -8.92363 -8.69895 -8.47158 -6.19503 -4.23393 0.93220 1.44491 3.08914 3.25993 3.31001 3.33996 3.66461 4.01658 4.34570 4.45893 4.60266 4.96453 5.00444 5.02399 5.14454 5.21207 5.36443 5.39159 5.45866 5.59874 5.61526 5.67610 5.74281 5.97063 6.00281 6.00889 6.07196 6.39367 6.51557 6.57591 6.61732 6.83943 6.86734 6.93731 7.11874 7.55587 7.67801 7.86592 8.12658 8.63742 8.90012 9.40712 10.89921 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003987 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.164083 B = 7021.808506 C = 7484.812539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.056 4.056 5 C -0.133 4.133 6 C -0.059 4.059 7 C -0.116 4.116 8 C 0.494 3.506 9 O -0.518 6.518 10 O -0.351 6.351 11 C 0.213 3.787 12 H 0.054 0.946 13 C -0.149 4.149 14 C -0.524 4.524 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.909 3.091 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.060 4.060 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.267 0.733 37 H 0.141 0.859 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 7.408 -17.352 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.056 4.056 5 C -0.151 4.151 6 C -0.077 4.077 7 C -0.117 4.117 8 C 0.339 3.661 9 O -0.410 6.410 10 O -0.267 6.267 11 C 0.161 3.839 12 H 0.072 0.928 13 C -0.207 4.207 14 C -0.562 4.562 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.078 4.078 23 C -0.149 4.149 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.459 6.988 -17.186 19.996 hybrid contribution 0.163 0.254 0.962 1.008 sum -7.296 7.242 -16.224 19.207 Atomic orbital electron populations 1.21866 0.94163 1.02169 1.02010 1.20178 0.96098 0.96166 0.95305 1.21867 1.01409 0.94947 1.02009 1.20082 0.95888 0.94836 0.94787 1.20949 0.99591 0.96220 0.98374 1.21277 0.96857 0.98862 0.90677 1.19446 1.02376 0.98061 0.91843 1.21071 0.77806 0.82209 0.85026 1.90759 1.36058 1.26253 1.87887 1.86530 1.69113 1.56397 1.14660 1.20662 0.93759 0.90382 0.79127 0.92814 1.22086 0.99210 0.98167 1.01223 1.20967 1.40802 0.97302 0.97109 0.91276 1.24900 0.94170 0.95724 0.99018 1.69994 1.35563 1.18672 1.28107 0.86341 0.77732 0.80498 0.81888 1.20230 1.21060 1.19648 1.21569 0.93507 0.92944 0.99747 1.20938 1.01654 1.00728 0.91548 0.92229 0.92405 0.92426 0.90375 0.92395 0.92405 0.92218 0.85570 0.84674 0.96012 0.89895 0.94161 0.92375 0.84137 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.00 37.16 0.33 -0.74 16 2 C -0.06 -0.49 3.09 -91.78 -0.28 -0.77 16 3 C -0.15 -1.09 9.00 37.15 0.33 -0.76 16 4 C -0.06 -0.62 4.79 -104.52 -0.50 -1.12 16 5 C -0.13 -1.58 9.65 -39.64 -0.38 -1.96 16 6 C -0.06 -0.87 9.60 -39.17 -0.38 -1.25 16 7 C -0.12 -2.03 5.87 -104.99 -0.62 -2.65 16 8 C 0.49 11.05 7.87 34.61 0.27 11.32 16 9 O -0.52 -12.86 15.60 -19.24 -0.30 -13.16 16 10 O -0.35 -8.58 9.12 -40.53 -0.37 -8.95 16 11 C 0.21 5.83 2.43 -27.88 -0.07 5.76 16 12 H 0.05 1.64 7.10 -51.93 -0.37 1.27 16 13 C -0.15 -3.78 9.43 37.16 0.35 -3.43 16 14 C -0.52 -14.87 8.82 -34.45 -0.30 -15.18 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C 0.06 1.80 5.17 -17.82 -0.09 1.71 16 17 N -0.89 -25.66 12.16 55.43 0.67 -24.98 16 18 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.06 -0.89 9.62 -39.17 -0.38 -1.27 16 23 C -0.13 -1.57 8.69 -39.64 -0.34 -1.91 16 24 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 31 H 0.13 1.16 7.94 -52.49 -0.42 0.74 16 32 H 0.14 2.00 7.65 -52.48 -0.40 1.60 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 2.21 6.83 -51.92 -0.35 1.86 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 37 H 0.14 2.12 7.61 -52.49 -0.40 1.72 16 38 H 0.13 1.22 7.08 -52.49 -0.37 0.85 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -31.14 322.60 -7.78 -38.91 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.57 Total: -0.60 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.05 Total: -12.24 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.67 Total: -24.98 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.67 Total: -22.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.14 -7.78 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.600 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds