Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99994 * 2 1 3 5 5 C 1.38373 * 119.84634 * 119.99346 * 4 2 1 6 6 C 1.37946 * 120.14556 * 179.97438 * 5 4 2 7 7 C 1.39618 * 119.85044 * 0.03093 * 6 5 4 8 8 C 1.47727 * 120.15165 * 179.97438 * 7 6 5 9 9 O 1.21471 * 119.99592 * 0.27660 * 8 7 6 10 10 O 1.34713 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00305 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.46770 * 30.00070 * 11 10 8 13 13 C 1.53001 * 109.46784 * 270.00320 * 11 10 8 14 14 C 1.50695 * 109.47198 * 150.00300 * 11 10 8 15 15 H 1.08003 * 119.99832 * 5.46312 * 14 11 10 16 16 C 1.37870 * 120.00110 * 185.46125 * 14 11 10 17 17 N 1.31516 * 119.99938 * 9.55174 * 16 14 11 18 18 Si 1.86803 * 120.00166 * 189.54988 * 16 14 11 19 19 H 1.48506 * 109.46992 * 84.99607 * 18 16 14 20 20 H 1.48499 * 109.47166 * 204.99433 * 18 16 14 21 21 H 1.48496 * 109.47130 * 324.99655 * 18 16 14 22 22 C 1.39630 * 119.70140 * 0.24688 * 7 6 5 23 23 C 1.37941 * 119.84763 * 359.47481 * 22 7 6 24 24 H 1.09002 * 109.47026 * 300.00692 * 1 2 3 25 25 H 1.09006 * 109.47309 * 59.99714 * 1 2 3 26 26 H 1.08997 * 109.47650 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46689 * 239.99702 * 2 1 3 28 28 H 1.09008 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46927 * 299.99633 * 3 2 1 30 30 H 1.08999 * 109.47480 * 60.00186 * 3 2 1 31 31 H 1.07995 * 119.92677 * 0.02619 * 5 4 2 32 32 H 1.08003 * 120.06958 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47148 * 63.66915 * 13 11 10 34 34 H 1.09010 * 109.46544 * 183.66394 * 13 11 10 35 35 H 1.09000 * 109.47407 * 303.65981 * 13 11 10 36 36 H 0.97007 * 119.99975 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.07620 * 179.72017 * 22 7 6 38 38 H 1.07998 * 119.92777 * 180.27626 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8275 -1.8353 1.0998 6 6 3.2912 -2.4900 2.2220 7 6 2.9558 -2.0157 3.4916 8 6 3.4482 -2.7121 4.6978 9 8 4.1507 -3.6968 4.5863 10 8 3.1232 -2.2516 5.9213 11 6 3.6428 -2.9854 7.0614 12 1 4.5956 -3.4430 6.7953 13 6 2.6475 -4.0761 7.4624 14 6 3.8450 -2.0402 8.2175 15 1 3.5251 -1.0118 8.1365 16 6 4.4384 -2.4882 9.3786 17 7 4.9961 -3.6786 9.4151 18 14 4.4501 -1.4042 10.8999 19 1 3.1798 -1.5862 11.6472 20 1 5.5938 -1.7824 11.7683 21 1 4.5861 0.0176 10.4936 22 6 2.1482 -0.8835 3.6161 23 6 1.6961 -0.2350 2.4857 24 1 -0.3633 0.5140 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.0864 -2.2009 0.1172 32 1 3.9121 -3.3676 2.1186 33 1 2.5507 -4.7961 6.6499 34 1 3.0066 -4.5843 8.3574 35 1 1.6764 -3.6249 7.6658 36 1 5.4132 -3.9940 10.2321 37 1 1.8813 -0.5140 4.5952 38 1 1.0751 0.6434 2.5805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -102.574224 kcal Electronic energy + Delta-G solvation = -19067.219030 eV Core-core repulsion = 16066.116266 eV Total energy + Delta-G solvation = -3001.102764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.50680 -40.17867 -37.63727 -36.21838 -35.30353 -32.27613 -31.80910 -30.90113 -27.91199 -27.45699 -25.85505 -23.70623 -23.48165 -21.80318 -20.80501 -19.25352 -18.51549 -17.84189 -16.91316 -16.78435 -16.33249 -16.01421 -15.51416 -14.95816 -14.73258 -14.53658 -14.30099 -14.24815 -14.06382 -13.61743 -13.44993 -13.20951 -12.96930 -12.84875 -12.78183 -12.53440 -12.30087 -12.17924 -11.97946 -11.83714 -11.62905 -11.50476 -11.41890 -11.04409 -10.62923 -9.99416 -9.80317 -8.33295 -6.47647 -0.30595 0.38222 1.40538 1.43872 1.53861 1.58011 1.94772 2.40075 2.77660 2.98663 3.61445 3.79444 3.87265 4.00057 4.18481 4.36052 4.38952 4.47314 4.49915 4.52959 4.72053 4.73474 4.86669 4.88892 4.96494 5.04642 5.05342 5.06550 5.18482 5.32266 5.38516 5.40385 5.42665 5.46026 5.53556 5.64606 5.79683 5.89576 6.02222 6.57123 6.89479 7.22968 8.77070 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003987 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.164083 B = 7021.808506 C = 7484.812539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.040 4.040 5 C -0.126 4.126 6 C -0.065 4.065 7 C -0.150 4.150 8 C 0.489 3.511 9 O -0.556 6.556 10 O -0.355 6.355 11 C 0.214 3.786 12 H 0.010 0.990 13 C -0.136 4.136 14 C -0.551 4.551 15 H 0.069 0.931 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.066 4.066 23 C -0.124 4.124 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.272 0.728 37 H 0.133 0.867 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 9.599 -18.937 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.040 4.040 5 C -0.143 4.143 6 C -0.083 4.083 7 C -0.151 4.151 8 C 0.336 3.664 9 O -0.449 6.449 10 O -0.272 6.272 11 C 0.161 3.839 12 H 0.028 0.972 13 C -0.194 4.194 14 C -0.588 4.588 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.806 3.194 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.084 4.084 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.151 0.849 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.940 9.186 -18.796 22.750 hybrid contribution 0.604 -0.398 1.268 1.460 sum -8.335 8.788 -17.528 21.305 Atomic orbital electron populations 1.21879 0.93227 1.02180 1.02950 1.20280 0.96735 0.96416 0.94084 1.21884 1.01057 0.94402 1.02949 1.20551 0.93784 0.93861 0.95776 1.21297 0.98585 0.95835 0.98599 1.21350 0.97188 0.99118 0.90683 1.19296 1.05548 0.99911 0.90329 1.22031 0.76965 0.81974 0.85432 1.90719 1.37950 1.28081 1.88161 1.86516 1.69209 1.56275 1.15170 1.20413 0.92490 0.90930 0.80088 0.97228 1.21910 0.99298 0.97647 1.00510 1.21244 1.41985 0.97537 0.98068 0.91263 1.25887 0.93060 0.97207 1.02098 1.70118 1.35810 1.20478 1.29194 0.85193 0.78289 0.78582 0.77338 1.18883 1.20365 1.18811 1.21579 0.93532 0.92514 1.00770 1.21218 1.01093 1.01002 0.90803 0.92252 0.90641 0.92903 0.88762 0.93005 0.90615 0.92267 0.82226 0.85434 0.95566 0.91495 0.92592 0.91933 0.84909 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.00 71.98 0.65 -0.93 16 2 C -0.06 -0.70 3.09 -11.54 -0.04 -0.74 16 3 C -0.15 -1.62 9.00 71.98 0.65 -0.98 16 4 C -0.04 -0.75 4.79 -19.80 -0.09 -0.85 16 5 C -0.13 -2.67 9.65 22.23 0.21 -2.45 16 6 C -0.07 -1.94 9.60 22.53 0.22 -1.72 16 7 C -0.15 -5.39 5.87 -20.10 -0.12 -5.51 16 8 C 0.49 23.12 7.87 70.33 0.55 23.68 16 9 O -0.56 -29.47 15.60 19.93 0.31 -29.16 16 10 O -0.36 -18.30 9.12 -56.23 -0.51 -18.81 16 11 C 0.21 12.31 2.43 29.85 0.07 12.38 16 12 H 0.01 0.64 7.10 -2.39 -0.02 0.62 16 13 C -0.14 -7.16 9.43 71.98 0.68 -6.48 16 14 C -0.55 -32.16 8.82 25.60 0.23 -31.94 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 16 C 0.02 0.99 5.17 84.65 0.44 1.43 16 17 N -0.92 -54.51 12.16 21.44 0.26 -54.25 16 18 Si 0.98 43.44 29.55 68.60 2.03 45.47 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 C -0.07 -1.96 9.62 22.54 0.22 -1.74 16 23 C -0.12 -2.67 8.69 22.23 0.19 -2.48 16 24 H 0.06 0.66 7.37 -2.39 -0.02 0.64 16 25 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 0.93 7.87 -2.39 -0.02 0.91 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.68 7.37 -2.39 -0.02 0.66 16 31 H 0.16 2.32 7.94 -2.91 -0.02 2.30 16 32 H 0.13 3.91 7.65 -2.91 -0.02 3.89 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 3.71 6.83 -2.38 -0.02 3.69 16 35 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 37 H 0.13 4.08 7.61 -2.91 -0.02 4.06 16 38 H 0.16 2.46 7.08 -2.91 -0.02 2.44 16 Total: -1.00 -70.49 322.60 6.98 -63.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.04 Total: 11.56 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.86 Total: -18.33 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.26 Total: -54.25 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.20 Total: -47.97 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.49 6.98 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.064 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds