Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47400 * 2 1 4 4 C 1.50696 * 109.47251 * 120.00433 * 2 1 3 5 5 H 1.07999 * 120.00220 * 119.99120 * 4 2 1 6 6 C 1.37881 * 119.99775 * 299.99800 * 4 2 1 7 7 N 1.31515 * 120.00232 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00061 * 0.02562 * 6 4 2 9 9 H 1.48491 * 109.47457 * 90.00037 * 8 6 4 10 10 H 1.48499 * 109.46987 * 210.00460 * 8 6 4 11 11 H 1.48508 * 109.46817 * 329.99988 * 8 6 4 12 12 O 1.45199 * 109.46809 * 240.00016 * 2 1 3 13 13 C 1.34234 * 116.99947 * 90.00178 * 12 2 1 14 14 O 1.20822 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99997 * 179.72219 * 13 12 2 16 16 C 1.52992 * 109.47263 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47304 * 180.02562 * 16 15 13 18 18 C 1.50708 * 109.47430 * 179.97438 * 17 16 15 19 19 C 1.38226 * 120.00158 * 269.72778 * 18 17 16 20 20 C 1.38233 * 120.00034 * 179.76080 * 19 18 17 21 21 C 1.38230 * 120.00039 * 0.50989 * 20 19 18 22 22 C 1.38236 * 119.99988 * 359.74740 * 21 20 19 23 23 C 1.38233 * 119.99495 * 89.99762 * 18 17 16 24 24 H 1.09004 * 109.47073 * 59.99280 * 1 2 3 25 25 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46472 * 300.00387 * 1 2 3 27 27 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47201 * 300.00712 * 15 13 12 29 29 H 1.09001 * 109.46880 * 60.00295 * 15 13 12 30 30 H 1.09001 * 109.47602 * 300.00478 * 16 15 13 31 31 H 1.09001 * 109.46922 * 60.00333 * 16 15 13 32 32 H 1.08998 * 109.47353 * 300.00224 * 17 16 15 33 33 H 1.09006 * 109.47395 * 59.99968 * 17 16 15 34 34 H 1.08004 * 120.00259 * 359.97438 * 19 18 17 35 35 H 1.08008 * 120.00282 * 180.22961 * 20 19 18 36 36 H 1.07999 * 120.00313 * 179.71859 * 21 20 19 37 37 H 1.07997 * 120.00269 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00554 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1764 1.4920 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9983 1.2519 -2.2504 15 6 2.7246 -0.5760 -3.5476 16 6 2.8674 0.4897 -4.6359 17 6 3.3820 -0.1602 -5.9218 18 6 3.5221 0.8895 -6.9941 19 6 2.4611 1.1622 -7.8371 20 6 2.5879 2.1285 -8.8174 21 6 3.7792 2.8147 -8.9616 22 6 4.8420 2.5382 -8.1220 23 6 4.7134 1.5756 -7.1381 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.9033 -0.5281 4.4375 28 1 3.6949 -1.0355 -3.3589 29 1 2.0193 -1.3389 -3.8770 30 1 1.8969 0.9488 -4.8245 31 1 3.5725 1.2529 -4.3068 32 1 4.3524 -0.6195 -5.7336 33 1 2.6766 -0.9233 -6.2508 34 1 1.5319 0.6228 -7.7276 35 1 1.7577 2.3442 -9.4737 36 1 3.8798 3.5664 -9.7304 37 1 5.7729 3.0740 -8.2348 38 1 5.5440 1.3592 -6.4825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = -80.000062 kcal Electronic energy + Delta-G solvation = -18626.330706 eV Core-core repulsion = 15626.206831 eV Total energy + Delta-G solvation = -3000.123875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81401 -39.38425 -36.21906 -34.87303 -33.19725 -31.47545 -31.06293 -30.52728 -27.26332 -25.27021 -23.38039 -22.75208 -21.45726 -20.80820 -19.59987 -17.35506 -16.85860 -16.53135 -16.05940 -15.75262 -15.32563 -15.19478 -14.46481 -14.05699 -13.64899 -13.56092 -13.21993 -12.96831 -12.67199 -12.36162 -12.22461 -12.10321 -11.78894 -11.55786 -11.37224 -11.21815 -11.03180 -10.88819 -10.70991 -10.22913 -9.96373 -9.75539 -9.55937 -9.12248 -9.09833 -8.85756 -8.69107 -6.23085 -4.25354 1.17674 1.22318 2.87022 3.18357 3.30650 3.33102 3.46817 3.66574 4.26382 4.55947 4.64411 4.81742 4.92932 4.98280 5.07678 5.09528 5.18238 5.29491 5.34287 5.51000 5.55241 5.67336 5.72358 5.85195 5.89387 6.06271 6.16782 6.26959 6.28803 6.29621 6.33057 6.40978 6.48523 6.61320 6.83414 7.03967 7.38226 7.53764 8.24146 8.62095 8.84184 9.34251 10.89094 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042140 B = 0.003230 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.295268 B = 8665.610061 C = 8793.229535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.045 0.955 4 C -0.525 4.525 5 H 0.087 0.913 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.343 6.343 13 C 0.450 3.550 14 O -0.524 6.524 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.082 4.082 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.269 0.731 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 3.285 -23.311 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.136 3.864 3 H 0.063 0.937 4 C -0.563 4.563 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.259 6.259 13 C 0.293 3.707 14 O -0.415 6.415 15 C -0.153 4.153 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.157 3.615 -23.030 23.411 hybrid contribution -0.692 0.921 0.332 1.199 sum 1.465 4.536 -22.698 23.193 Atomic orbital electron populations 1.22517 0.98544 1.01812 0.99788 1.20902 0.90439 0.94438 0.80621 0.93688 1.20799 1.33367 1.14802 0.87313 0.89513 1.24741 0.95670 0.96745 0.95257 1.69838 1.44802 1.39953 0.97996 0.86959 0.80752 0.83636 0.77760 1.19996 1.21671 1.18730 1.86513 1.75709 1.42883 1.20797 1.23550 0.74775 0.86053 0.86296 1.90596 1.49020 1.17058 1.84795 1.21363 1.03761 0.99653 0.90542 1.21377 1.02963 0.97408 0.92181 1.20656 1.02477 0.95957 0.92868 1.19921 0.93801 0.97548 0.96408 1.21089 0.98490 0.98368 0.95604 1.21144 0.97664 0.96513 0.98471 1.21132 0.93645 1.00130 0.99776 1.21154 0.98850 0.97965 0.95782 1.21108 0.97505 0.96536 0.98345 0.94457 0.91795 0.92587 0.92068 0.87943 0.88143 0.90957 0.90827 0.90582 0.90662 0.86035 0.86216 0.86338 0.86181 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.03 37.16 0.34 -3.58 16 2 C 0.19 4.85 2.15 -27.88 -0.06 4.79 16 3 H 0.05 1.22 6.21 -51.93 -0.32 0.90 16 4 C -0.53 -15.20 9.48 -34.44 -0.33 -15.53 16 5 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 8 Si 0.88 21.86 24.37 -169.99 -4.14 17.72 16 9 H -0.27 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 12 O -0.34 -7.85 9.86 -39.27 -0.39 -8.24 16 13 C 0.45 8.77 7.93 36.01 0.29 9.06 16 14 O -0.52 -11.62 15.20 -18.75 -0.28 -11.91 16 15 C -0.12 -1.51 5.81 -27.89 -0.16 -1.67 16 16 C -0.10 -1.21 4.49 -26.74 -0.12 -1.33 16 17 C -0.08 -0.76 5.35 -27.88 -0.15 -0.91 16 18 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 19 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 20 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 21 C -0.13 -1.14 10.05 -39.59 -0.40 -1.53 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 31 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -32.70 319.33 -7.60 -40.31 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.58 Total: -0.73 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.79 Total: -15.85 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.67 Total: -20.15 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.70 -7.60 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.692 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds