Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47400 * 2 1 4 4 C 1.50696 * 109.47251 * 120.00433 * 2 1 3 5 5 H 1.07999 * 120.00220 * 119.99120 * 4 2 1 6 6 C 1.37881 * 119.99775 * 299.99800 * 4 2 1 7 7 N 1.31515 * 120.00232 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00061 * 0.02562 * 6 4 2 9 9 H 1.48491 * 109.47457 * 90.00037 * 8 6 4 10 10 H 1.48499 * 109.46987 * 210.00460 * 8 6 4 11 11 H 1.48508 * 109.46817 * 329.99988 * 8 6 4 12 12 O 1.45199 * 109.46809 * 240.00016 * 2 1 3 13 13 C 1.34234 * 116.99947 * 90.00178 * 12 2 1 14 14 O 1.20822 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99997 * 179.72219 * 13 12 2 16 16 C 1.52992 * 109.47263 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47304 * 180.02562 * 16 15 13 18 18 C 1.50708 * 109.47430 * 179.97438 * 17 16 15 19 19 C 1.38226 * 120.00158 * 269.72778 * 18 17 16 20 20 C 1.38233 * 120.00034 * 179.76080 * 19 18 17 21 21 C 1.38230 * 120.00039 * 0.50989 * 20 19 18 22 22 C 1.38236 * 119.99988 * 359.74740 * 21 20 19 23 23 C 1.38233 * 119.99495 * 89.99762 * 18 17 16 24 24 H 1.09004 * 109.47073 * 59.99280 * 1 2 3 25 25 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46472 * 300.00387 * 1 2 3 27 27 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47201 * 300.00712 * 15 13 12 29 29 H 1.09001 * 109.46880 * 60.00295 * 15 13 12 30 30 H 1.09001 * 109.47602 * 300.00478 * 16 15 13 31 31 H 1.09001 * 109.46922 * 60.00333 * 16 15 13 32 32 H 1.08998 * 109.47353 * 300.00224 * 17 16 15 33 33 H 1.09006 * 109.47395 * 59.99968 * 17 16 15 34 34 H 1.08004 * 120.00259 * 359.97438 * 19 18 17 35 35 H 1.08008 * 120.00282 * 180.22961 * 20 19 18 36 36 H 1.07999 * 120.00313 * 179.71859 * 21 20 19 37 37 H 1.07997 * 120.00269 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00554 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1764 1.4920 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9983 1.2519 -2.2504 15 6 2.7246 -0.5760 -3.5476 16 6 2.8674 0.4897 -4.6359 17 6 3.3820 -0.1602 -5.9218 18 6 3.5221 0.8895 -6.9941 19 6 2.4611 1.1622 -7.8371 20 6 2.5879 2.1285 -8.8174 21 6 3.7792 2.8147 -8.9616 22 6 4.8420 2.5382 -8.1220 23 6 4.7134 1.5756 -7.1381 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.9033 -0.5281 4.4375 28 1 3.6949 -1.0355 -3.3589 29 1 2.0193 -1.3389 -3.8770 30 1 1.8969 0.9488 -4.8245 31 1 3.5725 1.2529 -4.3068 32 1 4.3524 -0.6195 -5.7336 33 1 2.6766 -0.9233 -6.2508 34 1 1.5319 0.6228 -7.7276 35 1 1.7577 2.3442 -9.4737 36 1 3.8798 3.5664 -9.7304 37 1 5.7729 3.0740 -8.2348 38 1 5.5440 1.3592 -6.4825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = -98.144736 kcal Electronic energy + Delta-G solvation = -18627.117518 eV Core-core repulsion = 15626.206831 eV Total energy + Delta-G solvation = -3000.910687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40319 -40.12794 -37.88050 -35.88169 -35.29224 -32.85572 -32.06337 -31.72435 -28.21468 -27.35516 -24.61490 -23.42149 -22.93116 -21.66893 -21.19449 -19.16555 -18.43868 -17.76589 -17.43144 -17.24916 -16.40542 -16.20195 -15.84695 -15.28724 -14.93034 -14.64959 -14.37258 -14.24585 -14.18992 -13.88591 -13.67406 -13.39889 -12.98109 -12.85599 -12.82558 -12.45514 -12.23544 -11.95510 -11.79644 -11.73203 -11.67766 -11.53200 -11.32042 -11.20389 -10.84548 -9.78112 -9.56032 -8.46163 -6.54962 0.48385 0.53983 1.22051 1.29928 1.32203 1.39459 1.99402 2.18331 2.86498 2.92148 3.72160 3.81400 3.94993 4.15024 4.18388 4.22602 4.26995 4.35858 4.38664 4.46539 4.53955 4.59855 4.65798 4.70546 4.78202 4.79145 4.89898 5.11081 5.18405 5.21404 5.25155 5.33078 5.38156 5.61690 5.66329 5.69407 5.78206 6.15500 6.17849 6.49192 6.91457 7.10877 8.69880 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042140 B = 0.003230 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.295268 B = 8665.610061 C = 8793.229535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.191 3.809 3 H 0.028 0.972 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.930 5.930 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.282 1.282 11 H -0.260 1.260 12 O -0.356 6.356 13 C 0.443 3.557 14 O -0.554 6.554 15 C -0.104 4.104 16 C -0.094 4.094 17 C -0.073 4.073 18 C -0.093 4.093 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.133 4.133 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.276 0.724 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 3.813 -25.058 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.137 3.863 3 H 0.046 0.954 4 C -0.578 4.578 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.568 5.568 8 Si 0.766 3.234 9 H -0.175 1.175 10 H -0.209 1.209 11 H -0.185 1.185 12 O -0.272 6.272 13 C 0.289 3.711 14 O -0.445 6.445 15 C -0.141 4.141 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.093 4.093 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.241 4.130 -24.801 25.173 hybrid contribution -0.305 0.732 0.802 1.128 sum 0.936 4.861 -23.999 24.504 Atomic orbital electron populations 1.22403 0.96296 1.02668 1.00672 1.20592 0.92082 0.92942 0.80708 0.95435 1.20979 1.33347 1.14008 0.89497 0.93413 1.25573 0.96909 0.99848 0.94664 1.69955 1.46207 1.41868 0.98779 0.85968 0.79944 0.79557 0.77898 1.17504 1.20896 1.18460 1.86512 1.76258 1.43371 1.21109 1.24838 0.73647 0.85881 0.86761 1.90578 1.50302 1.18496 1.85165 1.21560 1.05224 1.00214 0.87147 1.21301 1.01968 0.96795 0.93081 1.20592 1.03504 0.95896 0.91025 1.20096 0.94140 0.98125 0.96980 1.21350 0.98921 0.98804 0.95829 1.21459 0.98422 0.96295 0.98621 1.21460 0.93497 1.00417 1.00100 1.21451 0.99787 0.97978 0.95671 1.21351 0.97917 0.96965 0.98898 0.92445 0.91004 0.92707 0.91495 0.85749 0.85059 0.92178 0.92685 0.89296 0.88913 0.84937 0.84432 0.84402 0.84602 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.27 9.03 71.98 0.65 -6.62 16 2 C 0.19 9.77 2.15 29.85 0.06 9.84 16 3 H 0.03 1.51 6.21 -2.39 -0.01 1.49 16 4 C -0.54 -32.01 9.48 25.60 0.24 -31.76 16 5 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 6 C 0.03 1.74 5.45 84.66 0.46 2.20 16 7 N -0.93 -57.13 13.96 21.45 0.30 -56.84 16 8 Si 0.94 44.58 24.37 68.60 1.67 46.25 16 9 H -0.25 -10.88 6.87 99.48 0.68 -10.19 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 12 O -0.36 -16.22 9.86 -51.46 -0.51 -16.72 16 13 C 0.44 16.89 7.93 71.24 0.56 17.45 16 14 O -0.55 -24.35 15.20 21.98 0.33 -24.02 16 15 C -0.10 -2.49 5.81 29.85 0.17 -2.32 16 16 C -0.09 -2.09 4.49 30.59 0.14 -1.95 16 17 C -0.07 -1.18 5.35 29.85 0.16 -1.02 16 18 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16 19 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 20 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 21 C -0.14 -2.20 10.05 22.27 0.22 -1.97 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.05 2.43 3.27 -2.39 -0.01 2.42 16 27 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.09 1.18 8.08 -2.38 -0.02 1.16 16 34 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.71 319.33 6.20 -65.51 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.95 Total: 12.13 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.45 Total: -26.32 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.30 Total: -56.84 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.17 Total: -40.74 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.67 Total: 46.25 kcal Total: -71.71 6.20 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.633 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds