Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34224 * 117.00063 * 269.99753 * 12 2 1 14 14 O 1.20827 * 119.99784 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00259 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46906 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46925 * 179.97438 * 17 16 15 19 19 C 1.38233 * 119.99892 * 269.73031 * 18 17 16 20 20 C 1.38240 * 119.99455 * 179.76627 * 19 18 17 21 21 C 1.38230 * 120.00205 * 0.50728 * 20 19 18 22 22 C 1.38241 * 120.00019 * 359.74408 * 21 20 19 23 23 C 1.38235 * 119.99555 * 90.00450 * 18 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46984 * 300.00023 * 15 13 12 29 29 H 1.08999 * 109.47120 * 59.99618 * 15 13 12 30 30 H 1.08995 * 109.46893 * 300.00002 * 16 15 13 31 31 H 1.08996 * 109.46864 * 59.99969 * 16 15 13 32 32 H 1.08995 * 109.47624 * 299.99895 * 17 16 15 33 33 H 1.09004 * 109.46941 * 60.00174 * 17 16 15 34 34 H 1.08000 * 120.00494 * 359.97438 * 19 18 17 35 35 H 1.08001 * 119.99451 * 180.23269 * 20 19 18 36 36 H 1.08000 * 120.00075 * 179.72155 * 21 20 19 37 37 H 1.07994 * 120.00072 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99939 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7183 -0.5772 3.5495 16 6 2.8624 0.4889 4.6374 17 6 3.3706 -0.1623 5.9254 18 6 3.5132 0.8879 6.9968 19 6 4.7094 1.5643 7.1468 20 6 4.8386 2.5310 8.1264 21 6 3.7750 2.8139 8.9628 22 6 2.5804 2.1338 8.8162 23 6 2.4496 1.1708 7.8332 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.0087 -1.3369 3.8775 29 1 3.6871 -1.0410 3.3640 30 1 3.5717 1.2488 4.3097 31 1 1.8934 0.9522 4.8228 32 1 2.6610 -0.9220 6.2530 33 1 4.3396 -0.6259 5.7403 34 1 5.5419 1.3399 6.4964 35 1 5.7720 3.0621 8.2412 36 1 3.8774 3.5660 9.7311 37 1 1.7496 2.3545 9.4699 38 1 1.5163 0.6394 7.7185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = -89.663390 kcal Electronic energy + Delta-G solvation = -18552.066206 eV Core-core repulsion = 15551.523298 eV Total energy + Delta-G solvation = -3000.542908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63998 -39.27680 -35.99315 -34.76449 -33.23679 -31.35717 -31.02166 -29.55683 -27.12507 -25.30467 -23.25378 -22.71015 -21.34757 -20.74233 -19.42175 -17.12128 -16.67526 -16.52429 -15.92440 -15.46136 -15.15441 -15.05594 -14.37952 -13.97539 -13.57462 -13.50609 -13.20888 -12.77325 -12.37423 -12.13732 -11.95661 -11.72852 -11.44907 -11.21702 -11.13299 -11.02837 -10.96467 -10.81702 -10.63690 -10.37390 -10.27174 -9.58097 -9.48833 -9.05663 -8.89645 -8.81027 -8.47807 -6.17169 -4.24262 1.21999 1.26480 3.06385 3.26843 3.30128 3.32642 3.59239 3.78853 4.34619 4.62201 4.68892 4.85848 4.97202 5.04618 5.15361 5.20484 5.27798 5.35666 5.38668 5.56606 5.63637 5.74198 5.89517 5.89792 6.00724 6.13840 6.32690 6.36818 6.37015 6.53272 6.66496 6.87598 6.90268 6.93844 7.21128 7.61611 7.74994 7.96883 8.16460 8.67247 8.91408 9.41231 10.90259 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.046626 B = 0.003027 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.378343 B = 9247.546243 C = 9350.663490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.359 6.359 13 C 0.449 3.551 14 O -0.524 6.524 15 C -0.116 4.116 16 C -0.101 4.101 17 C -0.082 4.082 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.099 0.901 25 H 0.015 0.985 26 H 0.036 0.964 27 H 0.267 0.733 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -0.561 20.260 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.275 6.275 13 C 0.292 3.708 14 O -0.414 6.414 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.119 4.119 18 C -0.076 4.076 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.117 0.883 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.782 -0.095 20.039 20.602 hybrid contribution 0.171 -0.202 -0.878 0.917 sum 4.953 -0.297 19.161 19.793 Atomic orbital electron populations 1.22156 0.97634 1.00049 1.01369 1.20606 0.91358 0.93900 0.77926 0.93632 1.21004 1.32523 1.13467 0.88982 0.91383 1.24897 0.94948 0.95104 0.99081 1.69895 1.36068 1.22539 1.24256 0.86324 0.79207 0.79527 0.81009 1.19933 1.21033 1.19992 1.86480 1.75793 1.43771 1.21493 1.23416 0.74977 0.86074 0.86340 1.90597 1.48849 1.17092 1.84860 1.21355 1.03554 0.99568 0.90895 1.21370 1.02979 0.97425 0.92118 1.20660 1.02408 0.95936 0.92943 1.19931 0.93740 0.97569 0.96393 1.21101 0.97473 0.96575 0.98360 1.21146 0.98848 0.97911 0.95856 1.21128 0.93645 1.00143 0.99795 1.21143 0.97629 0.96565 0.98441 1.21094 0.98484 0.98369 0.95584 0.88282 0.96565 0.94465 0.92355 0.88371 0.88276 0.90882 0.90944 0.90702 0.90677 0.85994 0.86209 0.86356 0.86221 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.18 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.99 16 8 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 O -0.36 -8.67 9.86 -39.24 -0.39 -9.05 16 13 C 0.45 9.36 7.93 36.01 0.29 9.65 16 14 O -0.52 -12.50 15.20 -18.75 -0.29 -12.78 16 15 C -0.12 -1.63 5.81 -27.88 -0.16 -1.79 16 16 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 17 C -0.08 -0.81 5.35 -27.88 -0.15 -0.96 16 18 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 19 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 21 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 24 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -31.90 326.15 -8.64 -40.54 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.72 Total: 0.22 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.77 Total: -15.08 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.99 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.67 Total: -21.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.90 -8.64 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.122 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds