Wall clock time and date at job start Mon Mar 30 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34224 * 117.00063 * 269.99753 * 12 2 1 14 14 O 1.20827 * 119.99784 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00259 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46906 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46925 * 179.97438 * 17 16 15 19 19 C 1.38233 * 119.99892 * 269.73031 * 18 17 16 20 20 C 1.38240 * 119.99455 * 179.76627 * 19 18 17 21 21 C 1.38230 * 120.00205 * 0.50728 * 20 19 18 22 22 C 1.38241 * 120.00019 * 359.74408 * 21 20 19 23 23 C 1.38235 * 119.99555 * 90.00450 * 18 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46984 * 300.00023 * 15 13 12 29 29 H 1.08999 * 109.47120 * 59.99618 * 15 13 12 30 30 H 1.08995 * 109.46893 * 300.00002 * 16 15 13 31 31 H 1.08996 * 109.46864 * 59.99969 * 16 15 13 32 32 H 1.08995 * 109.47624 * 299.99895 * 17 16 15 33 33 H 1.09004 * 109.46941 * 60.00174 * 17 16 15 34 34 H 1.08000 * 120.00494 * 359.97438 * 19 18 17 35 35 H 1.08001 * 119.99451 * 180.23269 * 20 19 18 36 36 H 1.08000 * 120.00075 * 179.72155 * 21 20 19 37 37 H 1.07994 * 120.00072 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99939 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7183 -0.5772 3.5495 16 6 2.8624 0.4889 4.6374 17 6 3.3706 -0.1623 5.9254 18 6 3.5132 0.8879 6.9968 19 6 4.7094 1.5643 7.1468 20 6 4.8386 2.5310 8.1264 21 6 3.7750 2.8139 8.9628 22 6 2.5804 2.1338 8.8162 23 6 2.4496 1.1708 7.8332 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.0087 -1.3369 3.8775 29 1 3.6871 -1.0410 3.3640 30 1 3.5717 1.2488 4.3097 31 1 1.8934 0.9522 4.8228 32 1 2.6610 -0.9220 6.2530 33 1 4.3396 -0.6259 5.7403 34 1 5.5419 1.3399 6.4964 35 1 5.7720 3.0621 8.2412 36 1 3.8774 3.5660 9.7311 37 1 1.7496 2.3545 9.4699 38 1 1.5163 0.6394 7.7185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:15 Heat of formation + Delta-G solvation = -105.694716 kcal Electronic energy + Delta-G solvation = -18552.761376 eV Core-core repulsion = 15551.523298 eV Total energy + Delta-G solvation = -3001.238078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29279 -40.12261 -37.75854 -35.87153 -35.32717 -32.43139 -31.72511 -31.52071 -28.16314 -27.45911 -24.54276 -23.42214 -22.92078 -21.66548 -21.12719 -18.83937 -18.43435 -17.64137 -17.26913 -17.12084 -16.32060 -16.21580 -15.85424 -15.16209 -14.85506 -14.49806 -14.23318 -14.10090 -13.93529 -13.70412 -13.25300 -13.06572 -12.91266 -12.83208 -12.76827 -12.46524 -12.37625 -12.17111 -11.95624 -11.77191 -11.60796 -11.51720 -11.29676 -10.99700 -10.60240 -9.78109 -9.56039 -8.29396 -6.46925 0.48371 0.53973 1.38612 1.41875 1.45775 1.53952 2.07781 2.43100 2.92422 3.01107 3.73744 3.92133 3.94787 4.15003 4.18651 4.27467 4.35847 4.47136 4.53776 4.61170 4.65216 4.70738 4.76780 4.78826 4.83739 4.89682 5.10886 5.16568 5.21782 5.25048 5.37819 5.48076 5.61551 5.62724 5.66153 5.78201 5.92597 6.11570 6.17849 6.59194 6.99928 7.25852 8.78229 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.046626 B = 0.003027 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.378343 B = 9247.546243 C = 9350.663490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.268 1.268 12 O -0.366 6.366 13 C 0.439 3.561 14 O -0.560 6.560 15 C -0.102 4.102 16 C -0.094 4.094 17 C -0.072 4.072 18 C -0.094 4.094 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.132 4.132 24 H 0.080 0.920 25 H 0.022 0.978 26 H 0.047 0.953 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -2.005 20.996 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.193 1.193 12 O -0.282 6.282 13 C 0.285 3.715 14 O -0.452 6.452 15 C -0.139 4.139 16 C -0.132 4.132 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.150 4.150 24 H 0.098 0.902 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.479 -1.544 20.806 21.570 hybrid contribution -0.042 0.338 -1.011 1.067 sum 5.437 -1.206 19.795 20.563 Atomic orbital electron populations 1.21979 0.96831 1.00423 1.00730 1.20307 0.92011 0.91965 0.79485 0.97809 1.21301 1.33512 1.13975 0.90003 0.91285 1.25882 0.94695 0.95672 1.02293 1.70022 1.36622 1.23707 1.25303 0.85203 0.78801 0.78639 0.76586 1.18683 1.20257 1.19256 1.86476 1.76200 1.43897 1.21663 1.24849 0.73722 0.85870 0.87051 1.90581 1.50386 1.18930 1.85343 1.21544 1.05272 1.00040 0.87090 1.21296 1.01761 0.96850 0.93259 1.20588 1.03563 0.95859 0.90870 1.20106 0.94130 0.98210 0.96970 1.21352 0.97855 0.96968 0.98909 1.21453 0.99818 0.97882 0.95692 1.21463 0.93461 1.00397 1.00123 1.21458 0.98435 0.96339 0.98570 1.21351 0.98891 0.98860 0.95895 0.90167 0.95889 0.93402 0.91982 0.85245 0.85528 0.92817 0.92599 0.88934 0.89098 0.85191 0.84514 0.84341 0.84444 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.13 2.56 29.85 0.08 12.21 16 3 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -31.70 8.90 25.60 0.23 -31.48 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 9 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 O -0.37 -17.77 9.86 -51.36 -0.51 -18.28 16 13 C 0.44 18.37 7.93 71.24 0.56 18.94 16 14 O -0.56 -27.57 15.20 21.96 0.33 -27.24 16 15 C -0.10 -2.67 5.81 29.85 0.17 -2.50 16 16 C -0.09 -2.31 4.49 30.60 0.14 -2.17 16 17 C -0.07 -1.26 5.35 29.85 0.16 -1.10 16 18 C -0.09 -1.89 5.13 -19.86 -0.10 -1.99 16 19 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 20 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.14 -2.32 10.05 22.27 0.22 -2.10 16 22 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 24 H 0.08 4.53 6.07 -2.39 -0.01 4.51 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 31 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.09 1.31 8.08 -2.38 -0.02 1.30 16 34 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -70.39 326.15 6.58 -63.81 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.02 Total: 14.60 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.46 Total: -24.64 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.24 Total: -53.35 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.17 Total: -45.52 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.39 6.58 -63.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.887 kcal (2) G-P(sol) polarization free energy of solvation -70.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds