Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47675 * 2 1 4 4 C 1.50700 * 109.47098 * 239.99630 * 2 1 3 5 5 H 1.08000 * 120.00210 * 240.00198 * 4 2 1 6 6 C 1.37873 * 119.99896 * 60.00450 * 4 2 1 7 7 N 1.31510 * 120.00297 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00091 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47184 * 89.99331 * 8 6 4 10 10 H 1.48491 * 109.47122 * 210.00007 * 8 6 4 11 11 H 1.48505 * 109.46731 * 329.99828 * 8 6 4 12 12 O 1.45201 * 109.47136 * 119.99744 * 2 1 3 13 13 C 1.34226 * 117.00248 * 269.99736 * 12 2 1 14 14 O 1.20822 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00197 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47162 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.47141 * 305.00080 * 16 15 13 18 18 C 1.53003 * 109.47504 * 64.99683 * 16 15 13 19 19 C 1.50702 * 109.47401 * 185.00168 * 16 15 13 20 20 C 1.38234 * 120.00271 * 119.99302 * 19 16 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 299.97430 * 19 16 15 25 25 H 1.08999 * 109.47675 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47250 * 300.00373 * 1 2 3 27 27 H 1.09002 * 109.47155 * 60.00217 * 1 2 3 28 28 H 0.96999 * 120.00532 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47333 * 59.99873 * 15 13 12 30 30 H 1.09003 * 109.47018 * 299.99863 * 15 13 12 31 31 H 1.08997 * 109.46909 * 300.00295 * 18 16 15 32 32 H 1.09005 * 109.47050 * 60.00348 * 18 16 15 33 33 H 1.09004 * 109.47146 * 180.02562 * 18 16 15 34 34 H 1.08001 * 119.99769 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00489 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1619 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6292 -1.7586 -3.7121 12 8 2.0139 -0.6844 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2517 2.2506 15 6 2.7182 -0.5771 3.5495 16 6 2.8624 0.4889 4.6374 17 1 3.5022 1.2937 4.2750 18 6 1.4830 1.0519 4.9860 19 6 3.4786 -0.1278 5.8667 20 6 4.6795 0.3534 6.3535 21 6 5.2444 -0.2120 7.4813 22 6 4.6081 -1.2582 8.1227 23 6 3.4066 -1.7387 7.6365 24 6 2.8425 -1.1745 6.5076 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1612 -3.4844 29 1 3.6870 -1.0409 3.3641 30 1 2.0086 -1.3368 3.8775 31 1 1.0374 1.4980 4.0969 32 1 0.8432 0.2472 5.3484 33 1 1.5859 1.8117 5.7607 34 1 5.1765 1.1711 5.8526 35 1 6.1825 0.1642 7.8620 36 1 5.0516 -1.7029 9.0013 37 1 2.9096 -2.5564 8.1373 38 1 1.9043 -1.5505 6.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -83.286751 kcal Electronic energy + Delta-G solvation = -19148.638091 eV Core-core repulsion = 16148.371695 eV Total energy + Delta-G solvation = -3000.266396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98271 -39.14186 -36.15412 -34.69223 -33.24755 -31.01247 -30.12829 -29.45838 -27.72739 -25.31339 -23.79875 -22.66958 -21.79150 -20.19448 -19.27003 -17.28873 -16.69862 -16.47413 -15.70287 -15.29201 -15.00443 -14.92603 -14.36884 -13.77226 -13.65329 -13.33410 -13.19453 -12.67266 -12.47269 -12.23454 -11.99046 -11.59549 -11.37141 -11.23657 -11.10497 -11.03557 -10.82877 -10.77841 -10.62815 -10.37418 -10.27158 -9.51414 -9.47583 -9.01399 -8.89999 -8.77869 -8.48677 -6.17962 -4.24851 1.26056 1.30680 3.03798 3.24959 3.30256 3.34157 3.61511 3.78929 4.33776 4.70165 4.75259 4.90105 4.99315 5.06195 5.14900 5.17360 5.40460 5.45369 5.46910 5.73557 5.80871 5.84856 5.93126 5.95801 6.09924 6.21361 6.35703 6.40754 6.48964 6.61920 6.67202 6.89330 6.91147 6.93084 7.20586 7.61269 7.74211 7.96071 8.15795 8.66297 8.90780 9.40788 10.89462 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038327 B = 0.003708 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.387428 B = 7548.612651 C = 7816.963947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.358 6.358 13 C 0.452 3.548 14 O -0.520 6.520 15 C -0.109 4.109 16 C -0.041 4.041 17 H 0.088 0.912 18 C -0.150 4.150 19 C -0.070 4.070 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.036 0.964 26 H 0.016 0.984 27 H 0.099 0.901 28 H 0.266 0.734 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -3.290 18.476 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.274 6.274 13 C 0.295 3.705 14 O -0.411 6.411 15 C -0.147 4.147 16 C -0.059 4.059 17 H 0.106 0.894 18 C -0.207 4.207 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.132 4.132 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.569 -2.825 18.258 19.032 hybrid contribution 0.233 -0.342 -0.838 0.934 sum 4.803 -3.167 17.420 18.345 Atomic orbital electron populations 1.22155 0.97622 1.00050 1.01375 1.20612 0.91344 0.93909 0.77894 0.93570 1.21045 1.32458 1.13447 0.88977 0.91341 1.24890 0.94951 0.95088 0.99076 1.69897 1.36129 1.22575 1.24152 0.86276 0.79311 0.79139 0.81424 1.20352 1.20972 1.19618 1.86485 1.75732 1.43770 1.21458 1.23311 0.74916 0.86055 0.86191 1.90559 1.48891 1.16972 1.84642 1.21414 1.03680 0.99060 0.90537 1.19963 0.98394 0.96823 0.90721 0.89377 1.21982 0.95181 1.00722 1.02833 1.19921 0.94753 0.95898 0.96443 1.21129 0.95364 1.00215 0.96669 1.21127 0.99882 0.96820 0.95981 1.21121 0.95924 0.97457 1.00185 1.21138 0.96044 0.99971 0.96624 1.21066 1.00083 0.96305 0.95740 0.94494 0.96540 0.88282 0.92414 0.88217 0.88325 0.90005 0.93037 0.92786 0.85966 0.86233 0.86392 0.86204 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.32 37.15 0.35 -3.59 16 2 C 0.21 5.81 2.56 -27.89 -0.07 5.74 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 O -0.36 -8.57 9.86 -39.25 -0.39 -8.96 16 13 C 0.45 9.25 7.65 36.01 0.28 9.53 16 14 O -0.52 -11.81 13.19 -18.75 -0.25 -12.06 16 15 C -0.11 -1.60 5.03 -27.88 -0.14 -1.74 16 16 C -0.04 -0.54 2.21 -91.77 -0.20 -0.74 16 17 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16 18 C -0.15 -2.01 8.75 37.16 0.33 -1.69 16 19 C -0.07 -0.82 4.78 -104.62 -0.50 -1.32 16 20 C -0.12 -1.26 9.67 -39.59 -0.38 -1.65 16 21 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.11 -1.22 8.76 -39.58 -0.35 -1.57 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.27 7.57 -51.93 -0.39 0.88 16 31 H 0.08 1.33 5.96 -51.93 -0.31 1.02 16 32 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.12 1.20 7.95 -52.49 -0.42 0.79 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.19 7.16 -52.49 -0.38 0.81 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -30.69 318.10 -8.00 -38.68 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.47 Total: 1.37 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.29 Total: -15.19 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.63 Total: -24.80 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.63 Total: -21.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.69 -8.00 -38.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.602 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds