Wall clock time and date at job start Mon Mar 30 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47675 * 2 1 4 4 C 1.50700 * 109.47098 * 239.99630 * 2 1 3 5 5 H 1.08000 * 120.00210 * 240.00198 * 4 2 1 6 6 C 1.37873 * 119.99896 * 60.00450 * 4 2 1 7 7 N 1.31510 * 120.00297 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00091 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47184 * 89.99331 * 8 6 4 10 10 H 1.48491 * 109.47122 * 210.00007 * 8 6 4 11 11 H 1.48505 * 109.46731 * 329.99828 * 8 6 4 12 12 O 1.45201 * 109.47136 * 119.99744 * 2 1 3 13 13 C 1.34226 * 117.00248 * 269.99736 * 12 2 1 14 14 O 1.20822 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00197 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47162 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.47141 * 305.00080 * 16 15 13 18 18 C 1.53003 * 109.47504 * 64.99683 * 16 15 13 19 19 C 1.50702 * 109.47401 * 185.00168 * 16 15 13 20 20 C 1.38234 * 120.00271 * 119.99302 * 19 16 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 299.97430 * 19 16 15 25 25 H 1.08999 * 109.47675 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47250 * 300.00373 * 1 2 3 27 27 H 1.09002 * 109.47155 * 60.00217 * 1 2 3 28 28 H 0.96999 * 120.00532 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47333 * 59.99873 * 15 13 12 30 30 H 1.09003 * 109.47018 * 299.99863 * 15 13 12 31 31 H 1.08997 * 109.46909 * 300.00295 * 18 16 15 32 32 H 1.09005 * 109.47050 * 60.00348 * 18 16 15 33 33 H 1.09004 * 109.47146 * 180.02562 * 18 16 15 34 34 H 1.08001 * 119.99769 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00489 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1619 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6292 -1.7586 -3.7121 12 8 2.0139 -0.6844 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2517 2.2506 15 6 2.7182 -0.5771 3.5495 16 6 2.8624 0.4889 4.6374 17 1 3.5022 1.2937 4.2750 18 6 1.4830 1.0519 4.9860 19 6 3.4786 -0.1278 5.8667 20 6 4.6795 0.3534 6.3535 21 6 5.2444 -0.2120 7.4813 22 6 4.6081 -1.2582 8.1227 23 6 3.4066 -1.7387 7.6365 24 6 2.8425 -1.1745 6.5076 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1612 -3.4844 29 1 3.6870 -1.0409 3.3641 30 1 2.0086 -1.3368 3.8775 31 1 1.0374 1.4980 4.0969 32 1 0.8432 0.2472 5.3484 33 1 1.5859 1.8117 5.7607 34 1 5.1765 1.1711 5.8526 35 1 6.1825 0.1642 7.8620 36 1 5.0516 -1.7029 9.0013 37 1 2.9096 -2.5564 8.1373 38 1 1.9043 -1.5505 6.1272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:49 Heat of formation + Delta-G solvation = -98.449569 kcal Electronic energy + Delta-G solvation = -19149.295600 eV Core-core repulsion = 16148.371695 eV Total energy + Delta-G solvation = -3000.923905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47153 -40.21415 -37.83260 -35.93380 -35.32999 -31.87967 -31.73810 -30.69730 -28.98847 -27.46200 -24.90124 -23.63728 -23.24565 -21.65257 -20.65827 -18.85381 -18.55263 -17.66523 -17.15816 -17.00640 -16.40382 -15.87706 -15.85834 -14.92228 -14.82020 -14.66806 -14.19937 -14.08519 -13.99383 -13.65136 -13.37573 -13.18059 -13.01922 -12.82823 -12.68111 -12.40523 -12.24106 -12.20226 -12.16268 -11.81548 -11.58214 -11.52467 -11.12685 -10.98900 -10.60038 -9.76084 -9.58544 -8.29460 -6.46606 0.47911 0.55978 1.37759 1.41721 1.43790 1.55000 2.05857 2.42315 2.93559 3.01098 3.65849 3.75663 3.99100 4.16119 4.20088 4.24077 4.36189 4.43520 4.54597 4.61637 4.64013 4.69265 4.77802 4.80905 4.83279 4.96208 5.14969 5.16355 5.19030 5.24310 5.34315 5.48948 5.63113 5.64734 5.68430 5.78476 5.93527 6.12429 6.17778 6.59444 7.00515 7.26227 8.78215 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038327 B = 0.003708 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.387428 B = 7548.612651 C = 7816.963947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.265 1.265 12 O -0.367 6.367 13 C 0.445 3.555 14 O -0.546 6.546 15 C -0.097 4.097 16 C -0.033 4.033 17 H 0.072 0.928 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -5.093 19.717 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.806 3.194 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.284 6.284 13 C 0.290 3.710 14 O -0.438 6.438 15 C -0.134 4.134 16 C -0.052 4.052 17 H 0.090 0.910 18 C -0.204 4.204 19 C -0.083 4.083 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.345 -4.626 19.527 20.767 hybrid contribution 0.016 0.269 -1.105 1.137 sum 5.361 -4.357 18.422 19.675 Atomic orbital electron populations 1.21973 0.96780 1.00355 1.00816 1.20308 0.92003 0.92023 0.79299 0.97524 1.21327 1.33451 1.13916 0.90095 0.91491 1.25848 0.94710 0.95657 1.02197 1.70016 1.36618 1.23676 1.25229 0.85173 0.79034 0.78115 0.77035 1.19126 1.20265 1.18945 1.86478 1.76248 1.43997 1.21671 1.24491 0.73926 0.85919 0.86657 1.90553 1.49898 1.18368 1.84971 1.21556 1.04666 0.99657 0.87510 1.19843 0.98135 0.96029 0.91177 0.91002 1.21921 0.95445 1.01433 1.01555 1.19741 0.95482 0.96971 0.96125 1.21287 0.95405 1.00672 0.97477 1.21410 1.00641 0.96817 0.95424 1.21492 0.95674 0.96905 1.00644 1.21451 0.96214 1.00315 0.96170 1.21231 1.00496 0.96110 0.96251 0.93580 0.95692 0.90161 0.91983 0.86623 0.85808 0.93308 0.91363 0.91850 0.85827 0.84262 0.83931 0.83996 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.39 9.32 71.98 0.67 -6.72 16 2 C 0.22 12.12 2.56 29.84 0.08 12.19 16 3 H 0.01 0.43 7.16 -2.39 -0.02 0.42 16 4 C -0.55 -31.71 8.90 25.60 0.23 -31.49 16 5 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.23 11.32 21.45 0.24 -52.99 16 8 Si 0.98 43.15 29.54 68.60 2.03 45.17 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 O -0.37 -17.90 9.86 -51.37 -0.51 -18.40 16 13 C 0.44 18.55 7.65 71.24 0.54 19.09 16 14 O -0.55 -25.85 13.19 21.97 0.29 -25.56 16 15 C -0.10 -2.76 5.03 29.85 0.15 -2.61 16 16 C -0.03 -0.87 2.21 -11.54 -0.03 -0.90 16 17 H 0.07 2.09 7.69 -2.38 -0.02 2.07 16 18 C -0.15 -3.90 8.75 71.98 0.63 -3.27 16 19 C -0.08 -1.83 4.78 -19.87 -0.09 -1.93 16 20 C -0.13 -2.67 9.67 22.27 0.22 -2.46 16 21 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.12 -2.35 8.76 22.27 0.20 -2.16 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.12 2.94 7.57 -2.39 -0.02 2.93 16 31 H 0.05 1.62 5.96 -2.39 -0.01 1.61 16 32 H 0.07 1.55 7.39 -2.38 -0.02 1.53 16 33 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.12 2.38 7.95 -2.91 -0.02 2.36 16 35 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.13 2.20 7.16 -2.91 -0.02 2.18 16 Total: -1.00 -67.25 318.10 6.80 -60.45 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.04 Total: 15.67 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.71 Total: -24.34 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.24 Total: -52.99 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.22 Total: -43.97 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.25 6.80 -60.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.998 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds