Wall clock time and date at job start Mon Mar 30 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47359 * 2 1 4 4 O 1.21265 * 119.99384 * 359.97438 * 3 2 1 5 5 C 1.47127 * 120.00078 * 179.97438 * 3 2 1 6 6 C 1.39810 * 119.65013 * 179.97438 * 5 3 2 7 7 C 1.38141 * 119.14068 * 180.02562 * 6 5 3 8 8 C 1.39505 * 118.44727 * 0.02562 * 7 6 5 9 9 N 1.38901 * 120.38825 * 179.97438 * 8 7 6 10 10 C 1.46501 * 120.00122 * 174.21936 * 9 8 7 11 11 C 1.46504 * 119.99934 * 354.21989 * 9 8 7 12 12 H 1.08996 * 109.46897 * 4.64583 * 11 9 8 13 13 C 1.52999 * 109.47318 * 124.64666 * 11 9 8 14 14 C 1.50699 * 109.47008 * 244.64500 * 11 9 8 15 15 H 1.08004 * 120.00184 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99705 * 179.97438 * 14 11 9 17 17 N 1.31512 * 120.00324 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99823 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46983 * 60.00076 * 18 16 14 20 20 H 1.48497 * 109.47052 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47141 * 300.00062 * 18 16 14 22 22 C 1.39621 * 119.22773 * 359.97438 * 8 7 6 23 23 N 1.31211 * 120.79469 * 359.71918 * 22 8 7 24 24 H 1.09007 * 109.47059 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47394 * 300.00311 * 1 2 3 26 26 H 1.09004 * 109.47268 * 59.99976 * 1 2 3 27 27 H 1.08999 * 109.47394 * 239.99689 * 2 1 3 28 28 H 1.09004 * 109.47268 * 120.00024 * 2 1 3 29 29 H 1.08001 * 120.43031 * 359.97438 * 6 5 3 30 30 H 1.08007 * 120.77669 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.47092 * 90.00253 * 10 9 8 32 32 H 1.09008 * 109.46801 * 209.99847 * 10 9 8 33 33 H 1.08998 * 109.47034 * 329.99870 * 10 9 8 34 34 H 1.09000 * 109.47222 * 59.99577 * 13 11 9 35 35 H 1.08999 * 109.47445 * 180.02562 * 13 11 9 36 36 H 1.09004 * 109.46968 * 299.99722 * 13 11 9 37 37 H 0.97005 * 119.99870 * 180.02562 * 17 16 14 38 38 H 1.08007 * 119.60597 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3425 -0.0005 5 6 3.4788 1.6896 0.0006 6 6 3.9368 3.0106 0.0000 7 6 5.2972 3.2509 0.0000 8 6 6.1650 2.1586 0.0000 9 7 7.5402 2.3537 -0.0005 10 6 8.4429 1.2069 0.1273 11 6 8.0880 3.7064 -0.1288 12 1 7.2729 4.4300 -0.1292 13 6 9.0229 3.9919 1.0482 14 6 8.8578 3.8162 -1.4197 15 1 8.9320 2.9635 -2.0785 16 6 9.4675 5.0052 -1.7598 17 7 9.3776 6.0433 -0.9575 18 14 10.4211 5.1415 -3.3603 19 1 9.5134 4.8642 -4.5024 20 1 10.9765 6.5125 -3.4903 21 1 11.5319 4.1560 -3.3602 22 6 5.6350 0.8669 0.0006 23 7 4.3373 0.6732 0.0066 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2362 3.8325 -0.0012 30 1 5.6800 4.2608 0.0000 31 1 8.6809 0.8198 -0.8634 32 1 9.3606 1.5206 0.6250 33 1 7.9588 0.4273 0.7154 34 1 9.8380 3.2683 1.0486 35 1 9.4301 4.9984 0.9530 36 1 8.4661 3.9125 1.9819 37 1 9.8062 6.8799 -1.1970 38 1 6.3012 0.0168 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131483363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:48 Heat of formation + Delta-G solvation = -15.370165 kcal Electronic energy + Delta-G solvation = -19337.265820 eV Core-core repulsion = 16372.237259 eV Total energy + Delta-G solvation = -2965.028561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49414 -40.05270 -38.18662 -35.08794 -33.84044 -33.09669 -32.18310 -30.50926 -27.86636 -27.28627 -25.96209 -24.52965 -23.32490 -21.78038 -20.59186 -18.75988 -18.33982 -17.68625 -17.33199 -16.65359 -16.45486 -15.78815 -15.54815 -15.49013 -15.09973 -14.68505 -14.43544 -14.24303 -13.77008 -13.58341 -13.36117 -13.05711 -13.03237 -12.89397 -12.67737 -12.53170 -12.51137 -12.22302 -12.11709 -11.95226 -11.47138 -11.01508 -10.98941 -10.57076 -10.49368 -10.29103 -8.38413 -8.05699 -6.34691 -0.20881 0.37077 1.40276 1.41573 1.44837 1.49040 2.24296 2.44452 2.98214 3.03133 3.09251 3.58976 3.88221 3.96474 4.15421 4.26975 4.35307 4.35840 4.51021 4.59880 4.71234 4.77177 4.85873 4.90195 4.99047 5.00322 5.07645 5.12265 5.13690 5.21775 5.36793 5.38759 5.55410 5.63615 5.83267 6.09163 6.28370 6.47877 6.63439 6.77151 7.02505 7.36516 8.83443 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.004379 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.166620 B = 6392.048573 C = 6639.043574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.149 4.149 3 C 0.421 3.579 4 O -0.497 6.497 5 C -0.076 4.076 6 C -0.058 4.058 7 C -0.201 4.201 8 C 0.210 3.790 9 N -0.588 5.588 10 C 0.086 3.914 11 C 0.262 3.738 12 H 0.030 0.970 13 C -0.139 4.139 14 C -0.541 4.541 15 H 0.055 0.945 16 C 0.024 3.976 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.011 3.989 23 N -0.395 5.395 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.115 -11.863 2.952 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.301 3.699 4 O -0.374 6.374 5 C -0.212 4.212 6 C -0.079 4.079 7 C -0.231 4.231 8 C 0.095 3.905 9 N -0.289 5.289 10 C -0.056 4.056 11 C 0.160 3.840 12 H 0.048 0.952 13 C -0.198 4.198 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.177 4.177 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.159 4.159 23 N -0.106 5.106 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.581 -11.973 2.984 14.483 hybrid contribution 1.234 1.704 -0.876 2.280 sum -6.347 -10.269 2.108 12.255 Atomic orbital electron populations 1.21628 0.93545 1.02812 1.01919 1.21812 0.97518 0.93137 1.06135 1.22523 0.85854 0.92545 0.68981 1.90475 1.58022 1.49334 1.39542 1.21309 0.95878 0.89750 1.14233 1.21988 0.95033 0.97962 0.92945 1.21238 0.93054 0.99131 1.09655 1.19529 0.85397 0.95511 0.90092 1.47216 1.01577 1.09128 1.70955 1.21819 0.94303 0.87735 1.01758 1.18805 0.92825 0.78300 0.94053 0.95228 1.21951 0.99147 1.02957 0.95712 1.21563 1.33401 0.97706 1.05308 0.92681 1.25571 0.96966 0.95300 0.99838 1.69954 1.44730 1.02543 1.37852 0.85650 0.78993 0.77287 0.79965 1.20387 1.20941 1.19292 1.22688 0.91498 0.94371 1.07329 1.67332 1.03012 1.34223 1.06018 0.89710 0.93166 0.93310 0.87168 0.86945 0.84428 0.85501 0.92854 0.90885 0.89036 0.93733 0.91129 0.95458 0.92517 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.20 71.98 0.66 -2.04 16 2 C -0.15 -3.17 5.89 29.85 0.18 -3.00 16 3 C 0.42 12.50 7.11 28.02 0.20 12.70 16 4 O -0.50 -17.14 15.94 -2.98 -0.05 -17.19 16 5 C -0.08 -2.48 6.72 41.67 0.28 -2.20 16 6 C -0.06 -2.04 9.62 22.63 0.22 -1.82 16 7 C -0.20 -7.61 9.39 22.55 0.21 -7.40 16 8 C 0.21 7.53 6.55 38.66 0.25 7.78 16 9 N -0.59 -22.00 2.87 -701.73 -2.01 -24.02 16 10 C 0.09 2.50 9.51 127.77 1.21 3.72 16 11 C 0.26 11.91 2.58 44.24 0.11 12.02 16 12 H 0.03 1.50 5.34 -2.39 -0.01 1.49 16 13 C -0.14 -6.03 8.85 71.98 0.64 -5.39 16 14 C -0.54 -27.17 8.44 25.60 0.22 -26.95 16 15 H 0.05 2.77 7.79 -2.91 -0.02 2.74 16 16 C 0.02 1.21 5.30 84.66 0.45 1.66 16 17 N -0.91 -48.65 11.32 21.45 0.24 -48.41 16 18 Si 0.96 41.06 29.54 68.60 2.03 43.08 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 C 0.01 0.33 10.33 85.12 0.88 1.21 16 23 N -0.40 -12.15 9.77 -184.64 -1.80 -13.96 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.05 1.02 8.10 -2.39 -0.02 1.01 16 26 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 27 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.11 2.10 8.14 -2.38 -0.02 2.09 16 29 H 0.14 4.60 7.63 -2.91 -0.02 4.58 16 30 H 0.13 5.19 5.84 -2.91 -0.02 5.17 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 2.16 6.19 -2.38 -0.01 2.14 16 33 H 0.09 2.00 6.46 -2.39 -0.02 1.99 16 34 H 0.04 1.79 6.53 -2.39 -0.02 1.78 16 35 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 38 H 0.19 4.37 6.31 -2.91 -0.02 4.35 16 Total: -1.00 -57.81 313.62 4.98 -52.83 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.06 Total: 17.36 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.51 Total: -9.70 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.57 Total: -86.38 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.05 Total: -17.19 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -57.81 4.98 -52.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131483363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.459 kcal (2) G-P(sol) polarization free energy of solvation -57.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds