Wall clock time and date at job start Mon Mar 30 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50697 * 109.47189 * 2 1 4 4 O 1.21267 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.47128 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39816 * 119.65459 * 179.73164 * 5 3 2 7 7 C 1.38142 * 119.13878 * 179.72724 * 6 5 3 8 8 C 1.39501 * 118.44931 * 0.53212 * 7 6 5 9 9 N 1.38898 * 120.38794 * 179.70761 * 8 7 6 10 10 C 1.46506 * 120.00268 * 174.27405 * 9 8 7 11 11 C 1.46507 * 119.99991 * 354.27344 * 9 8 7 12 12 H 1.08997 * 109.46848 * 4.74369 * 11 9 8 13 13 C 1.52995 * 109.47262 * 244.73793 * 11 9 8 14 14 C 1.50703 * 109.46851 * 124.73781 * 11 9 8 15 15 H 1.07994 * 120.00594 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99863 * 179.97438 * 14 11 9 17 17 N 1.31517 * 119.99871 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00215 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46857 * 60.00036 * 18 16 14 20 20 H 1.48500 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46961 * 300.00410 * 18 16 14 22 22 C 1.39626 * 119.22787 * 359.72329 * 8 7 6 23 23 N 1.31207 * 120.79183 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46953 * 59.99470 * 1 2 3 25 25 H 1.08997 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46728 * 300.00135 * 1 2 3 27 27 H 1.09004 * 109.46728 * 239.99865 * 2 1 3 28 28 H 1.08999 * 109.46953 * 120.00530 * 2 1 3 29 29 H 1.07997 * 120.42819 * 359.97438 * 6 5 3 30 30 H 1.08001 * 120.77201 * 180.25834 * 7 6 5 31 31 H 1.08993 * 109.46620 * 89.99953 * 10 9 8 32 32 H 1.08997 * 109.46896 * 210.00201 * 10 9 8 33 33 H 1.08995 * 109.46546 * 329.99936 * 10 9 8 34 34 H 1.08997 * 109.47659 * 300.00079 * 13 11 9 35 35 H 1.09008 * 109.46705 * 60.00367 * 13 11 9 36 36 H 1.09005 * 109.46937 * 179.97438 * 13 11 9 37 37 H 0.96996 * 119.99934 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.60256 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3425 -0.0005 5 6 3.4789 1.6896 -0.0006 6 6 3.9370 3.0106 -0.0063 7 6 5.2974 3.2508 -0.0010 8 6 6.1651 2.1585 -0.0015 9 7 7.5403 2.3536 -0.0025 10 6 8.4431 1.2067 0.1235 11 6 8.0882 3.7065 -0.1295 12 1 7.2731 4.4302 -0.1269 13 6 8.8671 3.8202 -1.4414 14 6 9.0112 3.9854 1.0286 15 1 9.1739 3.2304 1.7835 16 6 9.6489 5.2041 1.1239 17 7 9.4512 6.1234 0.2044 18 14 10.7937 5.5497 2.5591 19 1 11.9037 4.5633 2.5553 20 1 11.3488 6.9209 2.4304 21 1 10.0380 5.4396 3.8326 22 6 5.6351 0.8668 -0.0014 23 7 4.3374 0.6732 -0.0014 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.2364 3.8325 -0.0106 30 1 5.6802 4.2607 -0.0010 31 1 8.6806 0.8207 -0.8677 32 1 9.3609 1.5197 0.6212 33 1 7.9592 0.4264 0.7110 34 1 9.6822 3.0965 -1.4440 35 1 8.1994 3.6184 -2.2790 36 1 9.2743 4.8269 -1.5361 37 1 9.8995 6.9809 0.2716 38 1 6.3014 0.0167 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131483598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:50 Heat of formation + Delta-G solvation = -2.353714 kcal Electronic energy + Delta-G solvation = -19323.537327 eV Core-core repulsion = 16359.073202 eV Total energy + Delta-G solvation = -2964.464125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15265 -38.74071 -36.68547 -33.32022 -32.76552 -31.78904 -30.55384 -29.09366 -26.48617 -25.45043 -24.67980 -23.26028 -21.91995 -20.36006 -19.23542 -17.34903 -16.59071 -16.27254 -15.92105 -15.32937 -14.98800 -14.43991 -14.23637 -14.04690 -13.58079 -13.28825 -13.04256 -12.72795 -12.50789 -12.22148 -11.98338 -11.72120 -11.61727 -11.51947 -11.20237 -11.05906 -11.03409 -10.91496 -10.50672 -10.32995 -9.92491 -9.73070 -9.29701 -9.05757 -8.98084 -8.63021 -6.81305 -6.27044 -4.38376 1.13106 1.74807 2.73164 3.15963 3.22057 3.23459 3.73283 4.21154 4.24178 4.33324 4.84238 5.02324 5.12853 5.23487 5.25637 5.30607 5.51629 5.60373 5.73811 5.85890 5.89397 5.92451 6.00595 6.00848 6.21157 6.25390 6.40389 6.47633 6.62718 6.69027 6.81348 6.91831 7.17085 7.44779 7.59190 7.70664 7.79527 8.00054 8.17274 8.37655 8.65835 9.29514 10.76076 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.004269 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574781 B = 6557.664814 C = 6809.321101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.422 3.578 4 O -0.473 6.473 5 C -0.071 4.071 6 C -0.052 4.052 7 C -0.186 4.186 8 C 0.222 3.778 9 N -0.578 5.578 10 C 0.087 3.913 11 C 0.258 3.742 12 H 0.055 0.945 13 C -0.149 4.149 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.001 4.001 23 N -0.401 5.401 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.013 0.987 36 H 0.095 0.905 37 H 0.267 0.733 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -9.725 -1.254 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C 0.301 3.699 4 O -0.348 6.348 5 C -0.207 4.207 6 C -0.073 4.073 7 C -0.215 4.215 8 C 0.106 3.894 9 N -0.277 5.277 10 C -0.056 4.056 11 C 0.158 3.842 12 H 0.073 0.927 13 C -0.208 4.208 14 C -0.573 4.573 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.171 4.171 23 N -0.112 5.112 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.539 -9.808 -1.310 12.440 hybrid contribution 1.313 1.089 0.757 1.866 sum -6.226 -8.719 -0.553 10.728 Atomic orbital electron populations 1.21627 0.94534 1.01283 1.02711 1.21783 0.96722 0.95890 1.04939 1.22049 0.86769 0.91021 0.70058 1.90481 1.57757 1.48140 1.38413 1.20940 0.94705 0.89961 1.15072 1.21899 0.95436 0.97145 0.92827 1.21287 0.92247 0.99502 1.08478 1.19368 0.85774 0.94767 0.89492 1.47399 1.00886 1.09591 1.69854 1.21670 0.95374 0.88123 1.00475 1.19132 0.94134 0.76592 0.94390 0.92738 1.22128 0.98809 1.04088 0.95776 1.21257 1.27399 1.00409 1.08195 0.91942 1.24894 0.96493 0.95759 0.96408 1.69842 1.42976 1.05959 1.33645 0.86504 0.80762 0.77522 0.82384 1.20097 1.21033 1.20097 1.22248 0.91212 0.94439 1.09197 1.67227 1.03096 1.34814 1.06070 0.92414 0.92431 0.92413 0.88463 0.88461 0.84751 0.83688 0.93650 0.89694 0.92414 0.94855 0.96811 0.88615 0.92333 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 37.16 0.34 -1.20 16 2 C -0.16 -1.86 5.89 -27.88 -0.16 -2.03 16 3 C 0.42 6.55 7.11 -30.70 -0.22 6.33 16 4 O -0.47 -8.26 15.94 5.57 0.09 -8.17 16 5 C -0.07 -1.19 6.72 -83.14 -0.56 -1.75 16 6 C -0.05 -0.90 9.62 -39.03 -0.38 -1.27 16 7 C -0.19 -3.44 9.39 -39.15 -0.37 -3.81 16 8 C 0.22 4.07 6.55 -83.67 -0.55 3.53 16 9 N -0.58 -11.06 2.87 -173.15 -0.50 -11.56 16 10 C 0.09 1.38 9.22 59.85 0.55 1.93 16 11 C 0.26 5.79 2.58 -69.08 -0.18 5.61 16 12 H 0.06 1.32 5.34 -51.93 -0.28 1.04 16 13 C -0.15 -3.27 9.04 37.15 0.34 -2.93 16 14 C -0.53 -13.16 7.96 -34.44 -0.27 -13.43 16 15 H 0.06 1.53 7.00 -52.49 -0.37 1.16 16 16 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -23.13 11.32 55.43 0.63 -22.51 16 18 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.00 -0.02 10.33 -17.30 -0.18 -0.20 16 23 N -0.40 -6.63 9.77 -9.71 -0.09 -6.72 16 24 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.13 2.18 7.63 -52.49 -0.40 1.78 16 30 H 0.15 2.80 5.84 -52.49 -0.31 2.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.44 6.66 -51.93 -0.35 1.09 16 33 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 34 H 0.03 0.69 7.79 -51.93 -0.40 0.29 16 35 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 36 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.15 2.12 6.31 -52.48 -0.33 1.79 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -26.80 313.98 -7.07 -33.86 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.17 Total: 3.22 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.73 Total: -7.62 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.04 Total: -40.79 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.80 -7.07 -33.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131483598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.509 kcal (2) G-P(sol) polarization free energy of solvation -26.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds