Wall clock time and date at job start Mon Mar 30 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50697 * 109.47189 * 2 1 4 4 O 1.21267 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.47128 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39816 * 119.65459 * 179.73164 * 5 3 2 7 7 C 1.38142 * 119.13878 * 179.72724 * 6 5 3 8 8 C 1.39501 * 118.44931 * 0.53212 * 7 6 5 9 9 N 1.38898 * 120.38794 * 179.70761 * 8 7 6 10 10 C 1.46506 * 120.00268 * 174.27405 * 9 8 7 11 11 C 1.46507 * 119.99991 * 354.27344 * 9 8 7 12 12 H 1.08997 * 109.46848 * 4.74369 * 11 9 8 13 13 C 1.52995 * 109.47262 * 244.73793 * 11 9 8 14 14 C 1.50703 * 109.46851 * 124.73781 * 11 9 8 15 15 H 1.07994 * 120.00594 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99863 * 179.97438 * 14 11 9 17 17 N 1.31517 * 119.99871 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00215 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46857 * 60.00036 * 18 16 14 20 20 H 1.48500 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46961 * 300.00410 * 18 16 14 22 22 C 1.39626 * 119.22787 * 359.72329 * 8 7 6 23 23 N 1.31207 * 120.79183 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46953 * 59.99470 * 1 2 3 25 25 H 1.08997 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46728 * 300.00135 * 1 2 3 27 27 H 1.09004 * 109.46728 * 239.99865 * 2 1 3 28 28 H 1.08999 * 109.46953 * 120.00530 * 2 1 3 29 29 H 1.07997 * 120.42819 * 359.97438 * 6 5 3 30 30 H 1.08001 * 120.77201 * 180.25834 * 7 6 5 31 31 H 1.08993 * 109.46620 * 89.99953 * 10 9 8 32 32 H 1.08997 * 109.46896 * 210.00201 * 10 9 8 33 33 H 1.08995 * 109.46546 * 329.99936 * 10 9 8 34 34 H 1.08997 * 109.47659 * 300.00079 * 13 11 9 35 35 H 1.09008 * 109.46705 * 60.00367 * 13 11 9 36 36 H 1.09005 * 109.46937 * 179.97438 * 13 11 9 37 37 H 0.96996 * 119.99934 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.60256 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3425 -0.0005 5 6 3.4789 1.6896 -0.0006 6 6 3.9370 3.0106 -0.0063 7 6 5.2974 3.2508 -0.0010 8 6 6.1651 2.1585 -0.0015 9 7 7.5403 2.3536 -0.0025 10 6 8.4431 1.2067 0.1235 11 6 8.0882 3.7065 -0.1295 12 1 7.2731 4.4302 -0.1269 13 6 8.8671 3.8202 -1.4414 14 6 9.0112 3.9854 1.0286 15 1 9.1739 3.2304 1.7835 16 6 9.6489 5.2041 1.1239 17 7 9.4512 6.1234 0.2044 18 14 10.7937 5.5497 2.5591 19 1 11.9037 4.5633 2.5553 20 1 11.3488 6.9209 2.4304 21 1 10.0380 5.4396 3.8326 22 6 5.6351 0.8668 -0.0014 23 7 4.3374 0.6732 -0.0014 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.2364 3.8325 -0.0106 30 1 5.6802 4.2607 -0.0010 31 1 8.6806 0.8207 -0.8677 32 1 9.3609 1.5197 0.6212 33 1 7.9592 0.4264 0.7110 34 1 9.6822 3.0965 -1.4440 35 1 8.1994 3.6184 -2.2790 36 1 9.2743 4.8269 -1.5361 37 1 9.8995 6.9809 0.2716 38 1 6.3014 0.0167 -0.0023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131483598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:50 Heat of formation + Delta-G solvation = -16.175116 kcal Electronic energy + Delta-G solvation = -19324.136668 eV Core-core repulsion = 16359.073202 eV Total energy + Delta-G solvation = -2965.063466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49691 -40.05276 -38.17847 -35.08517 -33.83722 -33.09961 -32.15078 -30.56278 -27.77419 -27.33096 -25.95826 -24.54700 -23.31612 -21.81957 -20.59453 -18.78528 -18.27357 -17.69889 -17.32220 -16.66472 -16.45435 -15.77791 -15.59506 -15.43068 -15.05878 -14.64994 -14.44710 -14.18305 -13.78659 -13.60049 -13.31694 -13.08721 -13.04260 -12.79093 -12.74707 -12.62219 -12.51866 -12.21098 -12.12382 -11.95214 -11.46328 -11.01304 -10.97941 -10.57789 -10.49480 -10.29203 -8.35394 -8.08356 -6.34656 -0.21254 0.36681 1.41228 1.42683 1.44805 1.49817 2.24307 2.44927 2.97830 3.02810 3.10001 3.58926 3.87880 3.96546 4.15588 4.27358 4.35929 4.37987 4.52111 4.60714 4.70801 4.77135 4.86025 4.90731 5.00172 5.02774 5.07791 5.10844 5.13737 5.23155 5.37162 5.40556 5.54853 5.62895 5.81726 6.06062 6.28500 6.47760 6.64737 6.77694 7.02370 7.36371 8.83967 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.004269 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574781 B = 6557.664814 C = 6809.321101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.149 4.149 3 C 0.421 3.579 4 O -0.497 6.497 5 C -0.076 4.076 6 C -0.058 4.058 7 C -0.202 4.202 8 C 0.208 3.792 9 N -0.588 5.588 10 C 0.084 3.916 11 C 0.262 3.738 12 H 0.030 0.970 13 C -0.137 4.137 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.023 3.977 17 N -0.913 5.913 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.012 3.988 23 N -0.395 5.395 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.265 0.735 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -12.177 -0.883 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.301 3.699 4 O -0.374 6.374 5 C -0.211 4.211 6 C -0.079 4.079 7 C -0.232 4.232 8 C 0.093 3.907 9 N -0.288 5.288 10 C -0.058 4.058 11 C 0.160 3.840 12 H 0.047 0.953 13 C -0.196 4.196 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.178 4.178 17 N -0.552 5.552 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.158 4.158 23 N -0.106 5.106 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.804 -12.294 -0.939 14.592 hybrid contribution 1.312 1.825 0.630 2.334 sum -6.492 -10.469 -0.309 12.323 Atomic orbital electron populations 1.21630 0.93554 1.02812 1.01915 1.21814 0.97511 0.93128 1.06145 1.22525 0.85852 0.92548 0.68982 1.90477 1.58031 1.49331 1.39534 1.21311 0.95879 0.89737 1.14206 1.21989 0.95015 0.97968 0.92929 1.21243 0.93065 0.99136 1.09708 1.19546 0.85399 0.95522 0.90182 1.47228 1.01548 1.09081 1.70960 1.21838 0.94480 0.87543 1.01917 1.18796 0.93006 0.78222 0.93949 0.95272 1.21938 0.98987 1.02670 0.95975 1.21545 1.27405 1.00328 1.08727 0.92098 1.25595 0.97916 0.95793 0.98454 1.69965 1.43926 1.06192 1.35073 0.85619 0.79210 0.77322 0.79559 1.19212 1.21109 1.20249 1.22694 0.91490 0.94354 1.07281 1.67331 1.03015 1.34214 1.06008 0.93209 0.89710 0.93276 0.87003 0.87084 0.84439 0.85544 0.91863 0.91145 0.89560 0.94141 0.95848 0.91173 0.92536 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.20 71.99 0.66 -2.02 16 2 C -0.15 -3.14 5.89 29.85 0.18 -2.97 16 3 C 0.42 12.42 7.11 28.02 0.20 12.62 16 4 O -0.50 -17.06 15.94 -2.99 -0.05 -17.11 16 5 C -0.08 -2.45 6.72 41.68 0.28 -2.17 16 6 C -0.06 -2.02 9.62 22.63 0.22 -1.80 16 7 C -0.20 -7.62 9.39 22.55 0.21 -7.41 16 8 C 0.21 7.44 6.55 38.66 0.25 7.70 16 9 N -0.59 -21.99 2.87 -701.74 -2.01 -24.00 16 10 C 0.08 2.48 9.22 127.77 1.18 3.65 16 11 C 0.26 11.93 2.58 44.24 0.11 12.04 16 12 H 0.03 1.49 5.34 -2.39 -0.01 1.47 16 13 C -0.14 -6.04 9.04 71.98 0.65 -5.39 16 14 C -0.54 -26.84 7.96 25.60 0.20 -26.64 16 15 H 0.06 2.97 7.00 -2.91 -0.02 2.95 16 16 C 0.02 1.16 5.30 84.65 0.45 1.61 16 17 N -0.91 -48.66 11.32 21.45 0.24 -48.41 16 18 Si 0.96 40.63 29.54 68.60 2.03 42.66 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.01 0.35 10.33 85.12 0.88 1.23 16 23 N -0.39 -12.04 9.77 -184.63 -1.80 -13.84 16 24 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 29 H 0.14 4.58 7.63 -2.91 -0.02 4.55 16 30 H 0.13 5.19 5.84 -2.91 -0.02 5.18 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.28 6.66 -2.39 -0.02 2.26 16 33 H 0.09 2.01 6.46 -2.39 -0.02 1.99 16 34 H 0.04 1.67 7.79 -2.39 -0.02 1.65 16 35 H 0.02 0.93 8.14 -2.38 -0.02 0.92 16 36 H 0.07 3.47 6.07 -2.38 -0.01 3.45 16 37 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.19 4.32 6.31 -2.91 -0.02 4.30 16 Total: -1.00 -57.34 313.98 4.94 -52.40 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.06 Total: 17.84 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.48 Total: -9.53 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.57 Total: -86.26 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.05 Total: -17.11 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -57.34 4.94 -52.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131483598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.225 kcal (2) G-P(sol) polarization free energy of solvation -57.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds