Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00257 * 2 1 4 4 C 1.53002 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46910 * 54.99847 * 4 3 2 6 6 C 1.53000 * 109.47373 * 294.99900 * 4 3 2 7 7 C 1.50699 * 109.46950 * 175.00222 * 4 3 2 8 8 O 1.20761 * 120.00367 * 29.99502 * 7 4 3 9 9 C 1.50706 * 120.00013 * 210.00425 * 7 4 3 10 10 H 1.09005 * 109.46476 * 325.46988 * 9 7 4 11 11 C 1.50696 * 109.47246 * 85.46957 * 9 7 4 12 12 H 1.07999 * 119.99903 * 59.69717 * 11 9 7 13 13 C 1.37879 * 119.99782 * 239.69839 * 11 9 7 14 14 N 1.31513 * 119.99495 * 175.02876 * 13 11 9 15 15 Si 1.86791 * 120.00189 * 355.02493 * 13 11 9 16 16 H 1.48504 * 109.47156 * 84.74465 * 15 13 11 17 17 H 1.48508 * 109.47164 * 204.74465 * 15 13 11 18 18 H 1.48497 * 109.47475 * 324.74157 * 15 13 11 19 19 C 1.50701 * 109.47135 * 205.47439 * 9 7 4 20 20 C 1.38235 * 119.99599 * 292.87648 * 19 9 7 21 21 C 1.38232 * 119.99885 * 180.02562 * 20 19 9 22 22 C 1.38240 * 120.00115 * 0.06307 * 21 20 19 23 23 C 1.38235 * 119.99603 * 0.02562 * 22 21 20 24 24 C 1.38229 * 120.00301 * 113.00580 * 19 9 7 25 25 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46837 * 300.00182 * 1 2 3 27 27 H 1.09000 * 109.46928 * 59.99743 * 1 2 3 28 28 H 1.09001 * 109.47033 * 60.00229 * 3 2 1 29 29 H 1.08991 * 109.46955 * 300.00130 * 3 2 1 30 30 H 1.09006 * 109.46780 * 60.00003 * 6 4 3 31 31 H 1.08998 * 109.47491 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.47531 * 300.00455 * 6 4 3 33 33 H 0.97008 * 119.99977 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.00001 * 0.10685 * 20 19 9 35 35 H 1.08005 * 120.00212 * 180.34205 * 21 20 19 36 36 H 1.07996 * 119.99821 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.99735 * 179.97438 * 23 22 21 38 38 H 1.07997 * 119.99840 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.8515 0.5681 -0.8409 6 6 3.9953 0.5368 1.3083 7 6 4.1482 2.5558 -0.1231 8 8 3.5696 3.5181 0.3214 9 6 5.4829 2.7264 -0.8019 10 1 6.1095 1.8589 -0.5942 11 6 5.2775 2.8531 -2.2894 12 1 4.6746 3.6572 -2.6846 13 6 5.8592 1.9424 -3.1457 14 7 5.6014 1.9939 -4.4342 15 14 7.0136 0.6357 -2.4756 16 1 6.2219 -0.5262 -1.9975 17 1 7.9397 0.1953 -3.5497 18 1 7.7971 1.1989 -1.3468 19 6 6.1566 3.9693 -0.2800 20 6 5.6215 5.2135 -0.5568 21 6 6.2398 6.3536 -0.0786 22 6 7.3939 6.2497 0.6753 23 6 7.9299 5.0056 0.9504 24 6 7.3111 3.8654 0.4731 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.5522 -0.4551 1.3978 31 1 5.0819 0.4511 1.3090 32 1 3.6794 1.1531 2.1499 33 1 6.0104 1.3529 -5.0367 34 1 4.7198 5.2947 -1.1455 35 1 5.8187 7.3254 -0.2902 36 1 7.8771 7.1405 1.0485 37 1 8.8318 4.9243 1.5391 38 1 7.7300 2.8934 0.6879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132234144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -71.576855 kcal Electronic energy + Delta-G solvation = -19931.042409 eV Core-core repulsion = 16931.283792 eV Total energy + Delta-G solvation = -2999.758617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.52306 -38.15193 -37.28344 -33.71791 -33.09473 -31.57781 -30.18309 -28.02795 -27.16187 -25.49952 -24.05892 -22.46981 -21.88808 -20.30324 -18.36908 -17.16137 -16.44443 -16.16901 -15.73601 -15.14570 -14.90879 -14.70227 -14.31299 -13.88997 -13.64638 -13.18829 -12.93517 -12.84804 -12.64410 -12.23231 -12.13570 -11.91998 -11.71895 -11.35397 -11.22579 -11.08931 -10.85798 -10.51867 -10.43912 -10.13626 -9.96488 -9.50279 -9.44475 -9.02053 -8.59881 -8.18553 -7.83391 -6.33855 -4.36910 2.09275 2.15665 2.85539 3.14663 3.22062 3.23810 3.91510 4.19096 4.52190 4.98390 5.06802 5.16873 5.33048 5.43213 5.50342 5.51189 5.55826 5.66208 5.71207 5.74601 5.83731 5.93575 6.02438 6.13508 6.16100 6.24398 6.34753 6.36412 6.49678 6.52304 6.73047 6.82144 7.12253 7.20801 7.26004 7.35712 7.54722 7.74929 8.20753 8.39291 8.71296 9.23526 10.77170 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.008108 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.521449 B = 3452.603645 C = 4447.909009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.078 3.922 4 C -0.140 4.140 5 H 0.106 0.894 6 C -0.134 4.134 7 C 0.383 3.617 8 O -0.478 6.478 9 C 0.005 3.995 10 H 0.067 0.933 11 C -0.506 4.506 12 H 0.084 0.916 13 C 0.083 3.917 14 N -0.879 5.879 15 Si 0.867 3.133 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.038 4.038 20 C -0.076 4.076 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.133 4.133 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.270 0.730 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -1.228 9.610 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.001 3.999 4 C -0.159 4.159 5 H 0.125 0.875 6 C -0.191 4.191 7 C 0.260 3.740 8 O -0.353 6.353 9 C -0.014 4.014 10 H 0.085 0.915 11 C -0.543 4.543 12 H 0.102 0.898 13 C -0.122 4.122 14 N -0.514 5.514 15 Si 0.693 3.307 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.038 4.038 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.152 4.152 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.328 -0.974 9.635 9.960 hybrid contribution 0.494 -0.561 -0.042 0.748 sum -1.835 -1.535 9.593 9.886 Atomic orbital electron populations 1.22689 0.81555 1.02232 0.99891 1.87833 1.19237 1.28500 1.95459 1.22351 0.92734 0.83898 1.00871 1.21649 0.94307 0.98681 1.01289 0.87549 1.21613 1.01278 1.01033 0.95168 1.24978 0.89227 0.88012 0.71821 1.90257 1.63191 1.42485 1.39335 1.18817 0.91466 0.93473 0.97668 0.91535 1.20522 1.33774 1.14567 0.85398 0.89818 1.25078 0.95573 0.96810 0.94773 1.69858 1.42292 1.36373 1.02861 0.86977 0.81956 0.82302 0.79476 1.19119 1.20867 1.18485 1.20128 0.94414 0.96026 0.93228 1.20953 0.99219 0.91541 0.97738 1.21066 0.96336 0.98163 0.99265 1.20891 0.97299 0.96875 1.01001 1.20908 0.99802 0.92844 1.01232 1.21022 0.96723 0.98010 0.99401 0.89962 0.94398 0.94108 0.92812 0.92760 0.91183 0.92279 0.92668 0.91945 0.86181 0.87077 0.87293 0.87191 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.39 10.24 -35.23 -0.36 -6.75 16 3 C 0.08 1.35 4.83 37.16 0.18 1.53 16 4 C -0.14 -2.61 2.90 -91.77 -0.27 -2.88 16 5 H 0.11 2.11 8.12 -51.93 -0.42 1.69 16 6 C -0.13 -2.09 9.07 37.16 0.34 -1.75 16 7 C 0.38 8.13 5.29 -29.03 -0.15 7.98 16 8 O -0.48 -10.74 15.08 6.00 0.09 -10.65 16 9 C 0.01 0.12 2.18 -94.07 -0.20 -0.08 16 10 H 0.07 1.46 4.45 -51.93 -0.23 1.22 16 11 C -0.51 -13.27 8.30 -34.44 -0.29 -13.56 16 12 H 0.08 2.42 7.60 -52.49 -0.40 2.02 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 15 Si 0.87 19.70 27.00 -169.99 -4.59 15.11 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.26 -5.63 6.71 56.52 0.38 -5.26 16 19 C -0.04 -0.82 4.57 -104.63 -0.48 -1.30 16 20 C -0.08 -1.63 8.04 -39.58 -0.32 -1.95 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 24 C -0.13 -2.60 9.67 -39.59 -0.38 -2.98 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.12 2.68 7.31 -52.49 -0.38 2.30 16 35 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.11 1.99 7.96 -52.49 -0.42 1.57 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -29.19 321.28 -6.63 -35.82 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.64 Total: 5.43 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -1.75 Total: -19.53 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.77 Total: -24.27 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.27 Total: -17.40 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.59 Total: 15.11 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.19 -6.63 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132234144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.754 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds