Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00257 * 2 1 4 4 C 1.53002 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46910 * 54.99847 * 4 3 2 6 6 C 1.53000 * 109.47373 * 294.99900 * 4 3 2 7 7 C 1.50699 * 109.46950 * 175.00222 * 4 3 2 8 8 O 1.20761 * 120.00367 * 29.99502 * 7 4 3 9 9 C 1.50706 * 120.00013 * 210.00425 * 7 4 3 10 10 H 1.09005 * 109.46476 * 325.46988 * 9 7 4 11 11 C 1.50696 * 109.47246 * 85.46957 * 9 7 4 12 12 H 1.07999 * 119.99903 * 59.69717 * 11 9 7 13 13 C 1.37879 * 119.99782 * 239.69839 * 11 9 7 14 14 N 1.31513 * 119.99495 * 175.02876 * 13 11 9 15 15 Si 1.86791 * 120.00189 * 355.02493 * 13 11 9 16 16 H 1.48504 * 109.47156 * 84.74465 * 15 13 11 17 17 H 1.48508 * 109.47164 * 204.74465 * 15 13 11 18 18 H 1.48497 * 109.47475 * 324.74157 * 15 13 11 19 19 C 1.50701 * 109.47135 * 205.47439 * 9 7 4 20 20 C 1.38235 * 119.99599 * 292.87648 * 19 9 7 21 21 C 1.38232 * 119.99885 * 180.02562 * 20 19 9 22 22 C 1.38240 * 120.00115 * 0.06307 * 21 20 19 23 23 C 1.38235 * 119.99603 * 0.02562 * 22 21 20 24 24 C 1.38229 * 120.00301 * 113.00580 * 19 9 7 25 25 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46837 * 300.00182 * 1 2 3 27 27 H 1.09000 * 109.46928 * 59.99743 * 1 2 3 28 28 H 1.09001 * 109.47033 * 60.00229 * 3 2 1 29 29 H 1.08991 * 109.46955 * 300.00130 * 3 2 1 30 30 H 1.09006 * 109.46780 * 60.00003 * 6 4 3 31 31 H 1.08998 * 109.47491 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.47531 * 300.00455 * 6 4 3 33 33 H 0.97008 * 119.99977 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.00001 * 0.10685 * 20 19 9 35 35 H 1.08005 * 120.00212 * 180.34205 * 21 20 19 36 36 H 1.07996 * 119.99821 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.99735 * 179.97438 * 23 22 21 38 38 H 1.07997 * 119.99840 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.8515 0.5681 -0.8409 6 6 3.9953 0.5368 1.3083 7 6 4.1482 2.5558 -0.1231 8 8 3.5696 3.5181 0.3214 9 6 5.4829 2.7264 -0.8019 10 1 6.1095 1.8589 -0.5942 11 6 5.2775 2.8531 -2.2894 12 1 4.6746 3.6572 -2.6846 13 6 5.8592 1.9424 -3.1457 14 7 5.6014 1.9939 -4.4342 15 14 7.0136 0.6357 -2.4756 16 1 6.2219 -0.5262 -1.9975 17 1 7.9397 0.1953 -3.5497 18 1 7.7971 1.1989 -1.3468 19 6 6.1566 3.9693 -0.2800 20 6 5.6215 5.2135 -0.5568 21 6 6.2398 6.3536 -0.0786 22 6 7.3939 6.2497 0.6753 23 6 7.9299 5.0056 0.9504 24 6 7.3111 3.8654 0.4731 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.5522 -0.4551 1.3978 31 1 5.0819 0.4511 1.3090 32 1 3.6794 1.1531 2.1499 33 1 6.0104 1.3529 -5.0367 34 1 4.7198 5.2947 -1.1455 35 1 5.8187 7.3254 -0.2902 36 1 7.8771 7.1405 1.0485 37 1 8.8318 4.9243 1.5391 38 1 7.7300 2.8934 0.6879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132234144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -88.349060 kcal Electronic energy + Delta-G solvation = -19931.769706 eV Core-core repulsion = 16931.283792 eV Total energy + Delta-G solvation = -3000.485914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15065 -39.58676 -38.65154 -35.57040 -34.55056 -33.37664 -31.63556 -29.66869 -28.33823 -26.73399 -25.89785 -23.97774 -23.36235 -21.81112 -20.02080 -19.13509 -17.85856 -17.65431 -17.03955 -16.64082 -16.47282 -16.24925 -15.77035 -15.33761 -15.15583 -14.84535 -14.64411 -14.33261 -14.07964 -13.72029 -13.51383 -13.35517 -13.18723 -12.86366 -12.78415 -12.44752 -12.22302 -12.04316 -11.92834 -11.81996 -11.65674 -11.36976 -10.92087 -10.70643 -10.35211 -9.65211 -9.36085 -8.39168 -6.47801 0.62699 0.68785 1.15587 1.35067 1.37978 1.46375 2.28477 2.60304 2.94382 3.12736 3.52546 3.79347 3.95342 4.09505 4.22218 4.26308 4.34846 4.40144 4.44600 4.47890 4.50447 4.55939 4.66345 4.76001 4.80435 4.84519 4.88663 4.89680 5.04033 5.19296 5.25073 5.32474 5.39483 5.69470 5.73523 5.92733 6.13131 6.17292 6.30558 6.54384 6.73909 7.16344 8.75946 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.008108 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.521449 B = 3452.603645 C = 4447.909009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.086 3.914 4 C -0.141 4.141 5 H 0.092 0.908 6 C -0.128 4.128 7 C 0.382 3.618 8 O -0.495 6.495 9 C 0.005 3.995 10 H 0.078 0.922 11 C -0.507 4.507 12 H 0.033 0.967 13 C 0.029 3.971 14 N -0.931 5.931 15 Si 0.925 3.075 16 H -0.246 1.246 17 H -0.284 1.284 18 H -0.237 1.237 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.145 4.145 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.272 0.728 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -2.003 12.503 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.009 3.991 4 C -0.160 4.160 5 H 0.111 0.889 6 C -0.185 4.185 7 C 0.261 3.739 8 O -0.371 6.371 9 C -0.014 4.014 10 H 0.096 0.904 11 C -0.544 4.544 12 H 0.051 0.949 13 C -0.171 4.171 14 N -0.568 5.568 15 Si 0.747 3.253 16 H -0.170 1.170 17 H -0.210 1.210 18 H -0.161 1.161 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.163 4.163 25 H 0.126 0.874 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.630 -1.744 12.551 12.687 hybrid contribution -0.126 -0.175 -0.934 0.958 sum -0.756 -1.919 11.617 11.799 Atomic orbital electron populations 1.22973 0.79383 1.04185 1.00659 1.87795 1.21583 1.27415 1.95537 1.22159 0.92142 0.84586 1.00230 1.21633 0.95117 0.96605 1.02664 0.88943 1.21624 1.02081 1.01556 0.93234 1.25099 0.88565 0.89104 0.71174 1.90238 1.63250 1.43414 1.40185 1.18768 0.92672 0.94762 0.95245 0.90393 1.20511 1.32923 1.13023 0.87956 0.94872 1.25948 0.97195 0.99245 0.94754 1.70007 1.44241 1.38041 1.04547 0.86032 0.79967 0.79832 0.79446 1.16965 1.21004 1.16090 1.20152 0.96005 0.95395 0.95453 1.20887 0.99238 0.93196 0.99256 1.21357 0.96959 0.97981 0.98970 1.21377 0.96064 0.98549 0.99205 1.21391 1.00491 0.91977 1.00173 1.21288 0.95849 0.99961 0.99166 0.87443 0.92862 0.94138 0.92030 0.94877 0.89587 0.91191 0.91938 0.91841 0.89461 0.84964 0.83186 0.83122 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -12.78 10.24 -148.98 -1.53 -14.30 16 3 C 0.09 2.99 4.83 71.98 0.35 3.34 16 4 C -0.14 -5.23 2.90 -11.54 -0.03 -5.26 16 5 H 0.09 3.68 8.12 -2.39 -0.02 3.66 16 6 C -0.13 -3.72 9.07 71.98 0.65 -3.07 16 7 C 0.38 16.63 5.29 29.10 0.15 16.79 16 8 O -0.49 -23.03 15.08 -1.45 -0.02 -23.05 16 9 C 0.00 0.23 2.18 -13.03 -0.03 0.20 16 10 H 0.08 3.33 4.45 -2.38 -0.01 3.32 16 11 C -0.51 -28.10 8.30 25.60 0.21 -27.89 16 12 H 0.03 2.10 7.60 -2.91 -0.02 2.08 16 13 C 0.03 1.59 5.47 84.66 0.46 2.06 16 14 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 15 Si 0.93 40.24 27.00 68.60 1.85 42.09 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.24 -9.38 6.71 99.48 0.67 -8.72 16 19 C -0.07 -3.06 4.57 -19.87 -0.09 -3.15 16 20 C -0.11 -4.74 8.04 22.27 0.18 -4.56 16 21 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 22 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.14 -5.30 9.67 22.27 0.22 -5.08 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 2.03 8.02 -2.39 -0.02 2.01 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.24 7.82 -2.38 -0.02 2.22 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 34 H 0.09 4.28 7.31 -2.91 -0.02 4.26 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.13 4.13 7.96 -2.91 -0.02 4.11 16 Total: -1.00 -67.13 321.28 5.58 -61.54 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.99 Total: 25.71 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.99 Total: -36.66 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.30 Total: -55.34 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.55 Total: -37.35 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.85 Total: 42.09 kcal Total: -67.13 5.58 -61.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132234144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.807 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds