Wall clock time and date at job start Mon Mar 30 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36022 * 117.00170 * 2 1 4 4 C 1.38688 * 120.04027 * 0.25691 * 3 2 1 5 5 C 1.38234 * 120.13218 * 180.23175 * 4 3 2 6 6 C 1.38263 * 120.21914 * 359.78682 * 5 4 3 7 7 C 1.38753 * 120.08517 * 359.95563 * 6 5 4 8 8 N 1.40043 * 120.06867 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99930 * 296.02321 * 8 7 6 10 10 C 1.50703 * 109.47181 * 285.95464 * 9 8 7 11 11 H 1.07994 * 120.00110 * 4.85644 * 10 9 8 12 12 C 1.37880 * 119.99991 * 184.85755 * 10 9 8 13 13 N 1.31522 * 120.00007 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47041 * 60.00053 * 14 12 10 16 16 H 1.48508 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47322 * 300.00392 * 14 12 10 18 18 C 1.46896 * 110.99887 * 59.97513 * 8 7 6 19 19 C 1.52996 * 117.50006 * 246.11133 * 18 8 7 20 20 C 1.52997 * 60.00114 * 252.51430 * 19 18 8 21 21 C 1.39034 * 120.04083 * 179.97438 * 3 2 1 22 22 N 1.40346 * 120.11046 * 0.02810 * 21 3 2 23 23 H 1.09001 * 109.47098 * 59.99679 * 1 2 3 24 24 H 1.08996 * 109.47501 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47200 * 300.00384 * 1 2 3 26 26 H 1.07994 * 119.93653 * 359.97274 * 4 3 2 27 27 H 1.07997 * 119.88948 * 179.76284 * 5 4 3 28 28 H 1.08007 * 119.95613 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47413 * 45.95068 * 9 8 7 30 30 H 1.08994 * 109.47151 * 165.95185 * 9 8 7 31 31 H 0.96994 * 120.00008 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54898 * 31.82607 * 18 8 7 33 33 H 1.08992 * 117.50078 * 0.02562 * 19 18 8 34 34 H 1.09011 * 117.49622 * 145.02263 * 19 18 8 35 35 H 1.09001 * 117.49613 * 252.50787 * 20 19 18 36 36 H 1.08999 * 117.49814 * 107.49284 * 20 19 18 37 37 H 0.97006 * 119.99618 * 179.72220 * 22 21 3 38 38 H 0.96994 * 120.00252 * 359.44570 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2920 2.3756 0.0054 5 6 1.9176 3.6083 0.0006 6 6 3.2979 3.6881 -0.0052 7 6 4.0616 2.5297 -0.0052 8 7 5.4597 2.6109 -0.0105 9 6 5.9458 3.2392 -1.2462 10 6 5.8131 2.2670 -2.3900 11 1 5.3366 1.3106 -2.2332 12 6 6.3000 2.5985 -3.6366 13 7 6.8808 3.7630 -3.8274 14 14 6.1361 1.3931 -5.0541 15 1 4.6995 1.1048 -5.2952 16 1 6.7352 1.9837 -6.2780 17 1 6.8440 0.1322 -4.7161 18 6 5.9497 3.3294 1.1733 19 6 6.6381 4.6769 0.9473 20 6 7.4647 3.4533 1.3475 21 6 3.4349 1.2857 0.0005 22 7 4.2023 0.1106 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2136 2.3187 0.0091 27 1 1.3262 4.5120 0.0009 28 1 3.7823 4.6535 -0.0094 29 1 5.3554 4.1309 -1.4570 30 1 6.9928 3.5169 -1.1250 31 1 7.2230 3.9963 -4.7044 32 1 5.3470 3.2166 2.0746 33 1 6.7270 5.0306 -0.0798 34 1 6.4882 5.4512 1.6998 35 1 7.8587 3.4225 2.3634 36 1 8.0978 3.0018 0.5837 37 1 5.1709 0.1640 -0.0032 38 1 3.7643 -0.7547 0.0082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134827060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:37 Heat of formation + Delta-G solvation = 32.352792 kcal Electronic energy + Delta-G solvation = -20215.679326 eV Core-core repulsion = 17252.720188 eV Total energy + Delta-G solvation = -2962.959138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91091 -38.43348 -36.41351 -33.81211 -33.24614 -32.09491 -28.61243 -28.11571 -26.96597 -26.14591 -22.90550 -21.85975 -21.66612 -21.22955 -19.16672 -17.57285 -16.56480 -16.54241 -15.96625 -15.42456 -15.26231 -14.86928 -14.53395 -14.15675 -13.86120 -13.48624 -13.15144 -12.50664 -12.25549 -12.03710 -11.72864 -11.38394 -11.10616 -10.94398 -10.89349 -10.76141 -10.67880 -10.63926 -10.26129 -10.04232 -9.90027 -9.68073 -9.13751 -8.40435 -7.73758 -7.30714 -6.59544 -6.00238 -3.99758 1.94596 2.21701 3.35759 3.39026 3.42939 3.56930 4.36796 4.38778 4.47533 4.65746 4.87260 5.20016 5.30183 5.36561 5.41825 5.49521 5.54749 5.56392 5.61732 5.69793 5.85898 6.00510 6.16374 6.18850 6.40904 6.60792 6.65372 6.76850 6.89318 7.07702 7.16139 7.24564 7.37855 7.71775 7.81239 8.09443 8.15765 8.43449 8.55690 8.62646 9.07250 9.63398 11.10623 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.008550 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.517494 B = 3274.140511 C = 4444.602773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.037 3.963 4 C -0.173 4.173 5 C -0.144 4.144 6 C -0.126 4.126 7 C 0.081 3.919 8 N -0.470 5.470 9 C 0.195 3.805 10 C -0.502 4.502 11 H 0.065 0.935 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.033 3.967 19 C -0.223 4.223 20 C -0.174 4.174 21 C 0.224 3.776 22 N -0.861 5.861 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.116 0.884 29 H -0.001 1.001 30 H 0.041 0.959 31 H 0.261 0.739 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.409 0.591 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 -3.065 9.886 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.239 6.239 3 C -0.012 4.012 4 C -0.192 4.192 5 C -0.165 4.165 6 C -0.147 4.147 7 C -0.017 4.017 8 N -0.189 5.189 9 C 0.072 3.928 10 C -0.541 4.541 11 H 0.083 0.917 12 C -0.144 4.144 13 N -0.540 5.540 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.076 4.076 19 C -0.262 4.262 20 C -0.211 4.211 21 C 0.117 3.883 22 N -0.401 5.401 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.240 0.760 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.281 -3.614 9.732 13.280 hybrid contribution -0.413 0.198 -1.043 1.139 sum -8.695 -3.416 8.689 12.758 Atomic orbital electron populations 1.22862 0.79442 1.02858 1.00835 1.85918 1.20384 1.27087 1.90500 1.18211 0.90246 0.84388 1.08307 1.20797 0.98741 0.92041 1.07637 1.20430 0.94211 0.96302 1.05545 1.21368 0.93934 0.98231 1.01119 1.17930 0.89380 0.90068 1.04372 1.59461 1.04927 1.51551 1.02985 1.19982 0.95654 0.93433 0.83748 1.21135 1.37208 1.02616 0.93103 0.91685 1.24926 0.95436 0.95390 0.98692 1.69934 1.39741 1.21068 1.23257 0.86596 0.78312 0.81231 0.81488 1.20365 1.21431 1.20264 1.22562 0.94400 0.95612 0.95035 1.23591 1.07026 0.92178 1.03389 1.23010 0.94419 1.01994 1.01722 1.16867 0.86528 0.87565 0.97336 1.42280 1.09210 1.04157 1.84438 0.93189 0.89103 0.93327 0.86480 0.86984 0.86549 0.98315 0.94073 0.92947 0.87730 0.87377 0.89935 0.89509 0.88255 0.75980 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.10 9.74 -19.81 -0.19 -5.29 16 3 C 0.04 0.66 6.70 -39.12 -0.26 0.39 16 4 C -0.17 -2.81 9.04 -39.42 -0.36 -3.17 16 5 C -0.14 -2.44 10.04 -39.57 -0.40 -2.84 16 6 C -0.13 -2.43 8.51 -39.38 -0.34 -2.76 16 7 C 0.08 1.67 4.24 -83.52 -0.35 1.32 16 8 N -0.47 -9.94 3.80 -164.74 -0.63 -10.57 16 9 C 0.19 4.93 3.30 -4.98 -0.02 4.91 16 10 C -0.50 -14.02 8.92 -34.44 -0.31 -14.32 16 11 H 0.06 1.82 7.79 -52.49 -0.41 1.41 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 14 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.03 0.60 5.53 -67.72 -0.37 0.22 16 19 C -0.22 -3.88 9.55 -26.73 -0.26 -4.14 16 20 C -0.17 -2.92 9.92 -26.73 -0.27 -3.19 16 21 C 0.22 4.37 6.79 -83.27 -0.57 3.81 16 22 N -0.86 -15.34 9.09 32.64 0.30 -15.05 16 23 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 26 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.12 2.23 7.62 -52.48 -0.40 1.83 16 29 H 0.00 -0.03 6.80 -51.93 -0.35 -0.38 16 30 H 0.04 1.10 5.65 -51.93 -0.29 0.81 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 1.76 8.04 -51.93 -0.42 1.34 16 33 H 0.11 2.19 6.01 -51.93 -0.31 1.88 16 34 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.86 7.49 -51.93 -0.39 1.47 16 37 H 0.41 7.55 8.12 -40.82 -0.33 7.22 16 38 H 0.39 6.14 8.20 -40.82 -0.33 5.81 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -30.39 312.72 -7.88 -38.27 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.19 Total: 13.57 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.59 Total: -16.87 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.41 Total: -51.49 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.19 Total: -5.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.39 -7.88 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134827060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.626 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds