Wall clock time and date at job start Mon Mar 30 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36022 * 117.00170 * 2 1 4 4 C 1.38688 * 120.04027 * 0.25691 * 3 2 1 5 5 C 1.38234 * 120.13218 * 180.23175 * 4 3 2 6 6 C 1.38263 * 120.21914 * 359.78682 * 5 4 3 7 7 C 1.38753 * 120.08517 * 359.95563 * 6 5 4 8 8 N 1.40043 * 120.06867 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99930 * 296.02321 * 8 7 6 10 10 C 1.50703 * 109.47181 * 285.95464 * 9 8 7 11 11 H 1.07994 * 120.00110 * 4.85644 * 10 9 8 12 12 C 1.37880 * 119.99991 * 184.85755 * 10 9 8 13 13 N 1.31522 * 120.00007 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47041 * 60.00053 * 14 12 10 16 16 H 1.48508 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47322 * 300.00392 * 14 12 10 18 18 C 1.46896 * 110.99887 * 59.97513 * 8 7 6 19 19 C 1.52996 * 117.50006 * 246.11133 * 18 8 7 20 20 C 1.52997 * 60.00114 * 252.51430 * 19 18 8 21 21 C 1.39034 * 120.04083 * 179.97438 * 3 2 1 22 22 N 1.40346 * 120.11046 * 0.02810 * 21 3 2 23 23 H 1.09001 * 109.47098 * 59.99679 * 1 2 3 24 24 H 1.08996 * 109.47501 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47200 * 300.00384 * 1 2 3 26 26 H 1.07994 * 119.93653 * 359.97274 * 4 3 2 27 27 H 1.07997 * 119.88948 * 179.76284 * 5 4 3 28 28 H 1.08007 * 119.95613 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47413 * 45.95068 * 9 8 7 30 30 H 1.08994 * 109.47151 * 165.95185 * 9 8 7 31 31 H 0.96994 * 120.00008 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54898 * 31.82607 * 18 8 7 33 33 H 1.08992 * 117.50078 * 0.02562 * 19 18 8 34 34 H 1.09011 * 117.49622 * 145.02263 * 19 18 8 35 35 H 1.09001 * 117.49613 * 252.50787 * 20 19 18 36 36 H 1.08999 * 117.49814 * 107.49284 * 20 19 18 37 37 H 0.97006 * 119.99618 * 179.72220 * 22 21 3 38 38 H 0.96994 * 120.00252 * 359.44570 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2920 2.3756 0.0054 5 6 1.9176 3.6083 0.0006 6 6 3.2979 3.6881 -0.0052 7 6 4.0616 2.5297 -0.0052 8 7 5.4597 2.6109 -0.0105 9 6 5.9458 3.2392 -1.2462 10 6 5.8131 2.2670 -2.3900 11 1 5.3366 1.3106 -2.2332 12 6 6.3000 2.5985 -3.6366 13 7 6.8808 3.7630 -3.8274 14 14 6.1361 1.3931 -5.0541 15 1 4.6995 1.1048 -5.2952 16 1 6.7352 1.9837 -6.2780 17 1 6.8440 0.1322 -4.7161 18 6 5.9497 3.3294 1.1733 19 6 6.6381 4.6769 0.9473 20 6 7.4647 3.4533 1.3475 21 6 3.4349 1.2857 0.0005 22 7 4.2023 0.1106 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2136 2.3187 0.0091 27 1 1.3262 4.5120 0.0009 28 1 3.7823 4.6535 -0.0094 29 1 5.3554 4.1309 -1.4570 30 1 6.9928 3.5169 -1.1250 31 1 7.2230 3.9963 -4.7044 32 1 5.3470 3.2166 2.0746 33 1 6.7270 5.0306 -0.0798 34 1 6.4882 5.4512 1.6998 35 1 7.8587 3.4225 2.3634 36 1 8.0978 3.0018 0.5837 37 1 5.1709 0.1640 -0.0032 38 1 3.7643 -0.7547 0.0082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134827060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:37 Heat of formation + Delta-G solvation = 12.550881 kcal Electronic energy + Delta-G solvation = -20216.538002 eV Core-core repulsion = 17252.720188 eV Total energy + Delta-G solvation = -2963.817814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28865 -39.82634 -37.74380 -35.30539 -35.01848 -33.87484 -30.13172 -29.55228 -28.37886 -27.59770 -24.83651 -23.28561 -23.05625 -22.60774 -20.67484 -19.10717 -18.31295 -17.93151 -17.36937 -16.91631 -16.75820 -16.45111 -15.92639 -15.75962 -15.22981 -14.91922 -14.60019 -14.13670 -13.78367 -13.47443 -13.25132 -13.08061 -12.75326 -12.63586 -12.48475 -12.32498 -12.10018 -12.01043 -11.84356 -11.67677 -11.35009 -11.16189 -11.13601 -10.58035 -9.13784 -8.95746 -8.17877 -7.98315 -6.24637 0.54010 0.82038 1.37346 1.39764 1.47410 2.36211 2.43734 2.95654 2.97838 3.15215 3.28520 3.40785 4.04417 4.13730 4.14621 4.20242 4.29177 4.41386 4.50216 4.53292 4.63496 4.79599 4.80942 4.84408 5.00355 5.13476 5.19266 5.25590 5.34358 5.34920 5.57694 5.69002 5.75887 5.80309 6.08056 6.43276 6.49294 6.70938 6.87916 7.02336 7.26418 7.42961 8.92632 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.008550 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.517494 B = 3274.140511 C = 4444.602773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.337 6.337 3 C 0.037 3.963 4 C -0.168 4.168 5 C -0.142 4.142 6 C -0.145 4.145 7 C 0.052 3.948 8 N -0.470 5.470 9 C 0.218 3.782 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.005 3.995 13 N -0.933 5.933 14 Si 0.959 3.041 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.268 1.268 18 C 0.022 3.978 19 C -0.219 4.219 20 C -0.161 4.161 21 C 0.201 3.799 22 N -0.858 5.858 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.065 0.935 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.105 0.895 29 H -0.032 1.032 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.404 0.596 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -4.100 10.652 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.251 6.251 3 C -0.012 4.012 4 C -0.187 4.187 5 C -0.163 4.163 6 C -0.166 4.166 7 C -0.047 4.047 8 N -0.189 5.189 9 C 0.094 3.906 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.087 4.087 19 C -0.258 4.258 20 C -0.199 4.199 21 C 0.094 3.906 22 N -0.399 5.399 23 H 0.074 0.926 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.124 0.876 29 H -0.014 1.014 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.178 -4.670 10.518 15.363 hybrid contribution 0.052 0.503 -1.225 1.325 sum -10.126 -4.167 9.293 14.362 Atomic orbital electron populations 1.23234 0.76861 1.05094 1.01859 1.85912 1.22996 1.26056 1.90171 1.18368 0.89899 0.85742 1.07220 1.21189 1.00508 0.91071 1.05907 1.20760 0.93363 0.97950 1.04186 1.21419 0.95247 0.97458 1.02455 1.18094 0.88917 0.91124 1.06557 1.59301 1.06017 1.51393 1.02171 1.19497 0.93785 0.91884 0.85420 1.21464 1.36739 1.02815 0.94205 0.92001 1.25751 0.95200 0.97035 1.01300 1.70059 1.40717 1.22758 1.23857 0.85598 0.78250 0.79299 0.78428 1.20182 1.20788 1.19281 1.22727 0.95415 0.95988 0.94556 1.23486 1.07220 0.92866 1.02245 1.23048 0.93224 1.00728 1.02884 1.17102 0.87757 0.87521 0.98200 1.42215 1.08841 1.04339 1.84478 0.92605 0.86491 0.91689 0.82911 0.84216 0.87643 1.01446 0.96346 0.92889 0.85870 0.91005 0.86903 0.85790 0.90763 0.76641 0.77138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -9.77 9.74 -93.80 -0.91 -10.68 16 3 C 0.04 1.24 6.70 22.57 0.15 1.39 16 4 C -0.17 -5.01 9.04 22.38 0.20 -4.81 16 5 C -0.14 -4.58 10.04 22.27 0.22 -4.35 16 6 C -0.14 -5.65 8.51 22.40 0.19 -5.46 16 7 C 0.05 2.16 4.24 38.21 0.16 2.32 16 8 N -0.47 -20.47 3.80 -675.12 -2.57 -23.04 16 9 C 0.22 11.59 3.30 85.56 0.28 11.87 16 10 C -0.51 -29.50 8.92 25.60 0.23 -29.28 16 11 H 0.06 3.52 7.79 -2.91 -0.02 3.50 16 12 C 0.00 0.28 5.46 84.65 0.46 0.74 16 13 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 14 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.02 0.79 5.53 44.91 0.25 1.04 16 19 C -0.22 -7.75 9.55 30.59 0.29 -7.46 16 20 C -0.16 -5.39 9.92 30.59 0.30 -5.09 16 21 C 0.20 7.79 6.79 38.22 0.26 8.05 16 22 N -0.86 -30.52 9.09 -50.64 -0.46 -30.98 16 23 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 24 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 26 H 0.15 3.39 6.29 -2.91 -0.02 3.37 16 27 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.11 4.21 7.62 -2.91 -0.02 4.19 16 29 H -0.03 -1.87 6.80 -2.38 -0.02 -1.89 16 30 H 0.02 1.05 5.65 -2.39 -0.01 1.04 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.12 4.04 8.04 -2.39 -0.02 4.02 16 33 H 0.07 3.09 6.01 -2.39 -0.01 3.08 16 34 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.07 2.87 7.49 -2.39 -0.02 2.86 16 37 H 0.40 15.11 8.12 -92.70 -0.75 14.36 16 38 H 0.40 12.34 8.20 -92.71 -0.76 11.58 16 Total: -1.00 -67.20 312.72 2.06 -65.13 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.42 Total: 37.65 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.12 Total: -29.48 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -2.74 Total: -110.48 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.91 Total: -10.68 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.20 2.06 -65.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134827060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.684 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds